Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010959

Physical Location & Seq

Genomic Coordinates Forward (+)

23658701 .. 23659090

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1115400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTACCATGGAAGAAGCCAAACCAGCTCCTTCTTAGAAGGGTTTTCTCTAAGCCCTCTGCCCTACCCAGTTCTCCTAATCCTGGCAGTAATCTCCATCTTCTTGGGCCTCTCATGGTACTCCTCCTATGAGTCAGCTGTGGAAGAAGCTGAAGAGCAATTCAATTGGGTTCTTTTGCTCATACCAATAGTTCTCATCCTCATTGTGAAGGGCCTCTCATCTATGGATCCTGATTGGCTCTTCTCCATGTCGCCGTGGGACCGCCGCCGGAGGACTCACCATATACCTTCAGAGGGAAGCTCACCTTGGGGTGTTGCTGCTTTCATTATTCTCTTGCTTGTTTTGCTGCAATACCGGTCTTCTTTTCGTGATAGCTGGCTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

5.48

Isoelectric Point (pI)

72.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21180
fragaria_vesca	FvH4_2g02061
malus_domestica	MD05G1115400.v1.1 MD10G1117900.v1.1
prunus_persica	Prupe.8G160100_v2.0.a1 Prupe.8G160200_v2.0.a1
pyrus_communis	pycom06g17780 pycom10g10180 pycom10g10190
rosa_chinensis	RchiOBHm_Chr6g0245291
rosa_laevigata	RLG00000008495 RLG00000015310
rosa_roxburghii	Rroxscaffold_3G00242150 Rroxscaffold_7G00215290
rosa_rugosa	Rorug05G0513400
rosa_samantha	Rh6AG028800 Rh6BG024900 Rh6CG023000 Rh6DG023000
rosa_wichuraiana	Rw6G002420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	265, 268
AclWI	GGATC	2 cut(s)	224, 237
AcuI	CTGAAG	2 cut(s)	174, 276
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	85, 296
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	5 cut(s)	30, 140, 152, 303, 378
AluI	AGCT	5 cut(s)	30, 140, 152, 303, 378
AlwI	GGATC	2 cut(s)	224, 237
AoxI	GGCC	2 cut(s)	109, 214
ApeKI	GCWGC	2 cut(s)	320, 349
AsiGI	ACCGGT	1 cut(s)	357
AspS9I	GGNCC	3 cut(s)	109, 214, 262
AsuHPI	GGTGA	2 cut(s)	272, 297
AvaII	GGWCC	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	307, 336
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	268, 321, 350
BlsI	GCNGC	3 cut(s)	269, 322, 351
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	109, 214, 262
BmiI	GGNNCC	2 cut(s)	231, 263
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BsaJI	CCNNGG	3 cut(s)	10, 257, 308
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 296
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	10, 257, 308
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	85, 296
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	307, 336
BshFI	GGCC	2 cut(s)	111, 216
BshTI	ACCGGT	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	271, 358
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	85, 296
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	111, 216
Bsp143I	GATC	1 cut(s)	229
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	2 cut(s)	265, 268
BspANI	GGCC	2 cut(s)	111, 216
BspLI	GGNNCC	2 cut(s)	231, 263
BspPI	GGATC	2 cut(s)	224, 237
BspQI	GCTCTTC	2 cut(s)	150, 248
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	10, 257, 308
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	2 cut(s)	10, 308
Bst2UI	CCWGG	1 cut(s)	86
Bst6I	CTCTTC	2 cut(s)	150, 248
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	37, 53
BstDSI	CCRYGG	2 cut(s)	10, 257
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 346
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	307, 336
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	111, 216
BtgI	CCRYGG	2 cut(s)	10, 257
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	3 cut(s)	109, 214, 262
Csp6I	GTAC	1 cut(s)	121
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	3 cut(s)	11, 117, 250
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	37, 53
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	150, 248
EarI	CTCTTC	2 cut(s)	150, 248
Eco130I	CCWWGG	2 cut(s)	10, 308
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	174, 276
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	2 cut(s)	10, 308
ErhI	CCWWGG	2 cut(s)	10, 308
FaeI	CATG	3 cut(s)	14, 120, 253
FaiI	YATR	8 cut(s)	12, 118, 132, 185, 227, 251, 285, 287
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	3 cut(s)	10, 116, 249
Fnu4HI	GCNGC	3 cut(s)	268, 321, 350
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	268, 321, 350
GluI	GCNGC	3 cut(s)	268, 321, 350
HaeIII	GGCC	2 cut(s)	111, 216
HapII	CCGG	2 cut(s)	271, 358
Hin1II	CATG	3 cut(s)	14, 120, 253
HinfI	GANTC	2 cut(s)	134, 277
HpaII	CCGG	2 cut(s)	271, 358
HphI	GGTGA	2 cut(s)	272, 297
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	233, 371
HpyAV	CCTTC	4 cut(s)	35, 43, 205, 300
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 346
HpyF3I	CTNAG	2 cut(s)	37, 53
Hsp92II	CATG	3 cut(s)	14, 120, 253
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	2 cut(s)	150, 248
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	8 cut(s)	40, 71, 84, 98, 246, 284, 364, 371
Lsp1109I	GCAGC	2 cut(s)	307, 336
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	6 cut(s)	27, 94, 158, 167, 235, 354
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	2 cut(s)	161, 166
MlyI	GAGTC	2 cut(s)	143, 271
MnlI	CCTC	7 cut(s)	69, 122, 136, 212, 227, 267, 289
MseI	TTAA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	2 cut(s)	271, 358
MspR9I	CCNGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	27, 346
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	3 cut(s)	14, 120, 253
NlaIV	GGNNCC	2 cut(s)	231, 263
PciSI	GCTCTTC	2 cut(s)	150, 248
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	269, 322, 351
PleI	GAGTC	2 cut(s)	142, 271
PpsI	GAGTC	2 cut(s)	142, 271
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	231, 263
PspPI	GGNCC	3 cut(s)	109, 214, 262
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SapI	GCTCTTC	2 cut(s)	150, 248
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	3 cut(s)	268, 321, 350
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	3 cut(s)	109, 214, 262
SchI	GAGTC	2 cut(s)	143, 271
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	7 cut(s)	32, 142, 154, 292, 305, 310, 380
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	2 cut(s)	161, 166
SsiI	CCGC	2 cut(s)	265, 268
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	10, 308
TasI	AATT	2 cut(s)	161, 166
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TseI	GCWGC	2 cut(s)	320, 349
TspDTI	ATGAA	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.