Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010959

Physical Location & Seq

Genomic Coordinates Reverse (-)

69787908 .. 69789317

Gene Structure 1410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0513400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGCTCCCTACAAGTATCGCCAAGCTTTCTAAATTGAAACTCTTGCTCCTTCATTTCAACAATCTTGAAGGTTCTCTGCCCATATCTTTGATGAATTGCACCAATCTTATAGAAATACATTTGGCATTCAATAACTTAAACGGGAACATCACCATGCTTAATTTTTCCAAACTCAGTCAACTTACTAAACTTGATCTAGGGAATAATTGCCTCACTGGTGTCGTGCCAATAAGCCTTTACTCATGCAAGTTATTGAAAGCAATTCGACTGAGTGAGAATGACCTAGAAGGACAAATCCAACCTGAGATTTTGTCATTGAAATCCCTGTCCTTCCTCTCGCTTAGTACCAATAGATTGACCAACATGACTAGAGCAATGAAATTATTTATGCGTTGCAGAAGTCTTGAATTCCTGGCCTTAGCATCTGCTTTTGTAGATGGGGAAACCCGAGCTGATGTTGGCATGGTTGAATTCGATGGACTCCAAAATCTTCAATTTTTGGATTTGGGTTACTGTGACCTTACTGGTGAAATTCCTAAATGGTTATCTAAGCTCAAGAGGCTAGGCGTCTTGTATATGGACCATAATAAAATCACAGGGTCAATTCCTAGTTGGATAGGGACTCTTCCAATGCTGTTTTTTATCAATCTGGAATCCAACCTAATTTCAGGCGAATTTCCAAAGGAACTTTGTAGACTACCAAAGTTGTTGTCTGAACAGACTGCAGGTCAAGTAGATGATGATGAGTTTGAATTGCCTATCTACGGATCTAAGGGTACATTATCGGTGGAGTACAAGTTTTCTTACTTTGTTCCAGCAATATTCATTGGGAATAATACCATTAGTGGAAACATACCTATTGAGATCGGCCAGTTGCAGCTTCTACATGGGTTGAGTTTTCGAAAAAACAACTTCTCCAGCAACATTCCAGAGCAGATATCTAACCTCGAGAATTTGGAGGCATTGGATCTCTCCAGGAATCAGTTTACTGGAAATATCCCATCATCATTTACAAAGTTTAATTTTTTGGCAGTCTTTAATGTCTCGTACAATAATCTTGAAGGATCAATACCAAGAGGCACTCAGCTCCAAAGTTTCAATGCTTCTGCATTTGAAGGGAACCTAAAACTTTGTGGTCCACCACTTCCAAATGAGTGTCCAGCAAACGATGACAATGATAATGCAGGTTACAGCCAAGACCATACAGAGGATGAGCATGAAAATCTAATTTCATGGTTCCACACTTCCATCATTCTCGGCTTCATTGTAGGATTTTGGGGAGTTTGTTGCCCTTTAGTGCTAAAAAAGAAGTGGAGATACGGATATTTCAAATTCCTAAACAGAGCACAAGATTTTCTCTACGTGATCATAATTGATTGTGTGTATGGCAAGAGAAGGCTTAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

469

Amino Acids

52.81

Weight (kDa)

6.21

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	38 - 95	5.1e-07	Leucine rich repeat
LRR_8	PF13855	163 - 222	1.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21180
fragaria_vesca	FvH4_2g02061
malus_domestica	MD05G1115400.v1.1 MD10G1117900.v1.1
prunus_persica	Prupe.8G160100_v2.0.a1 Prupe.8G160200_v2.0.a1
pyrus_communis	pycom06g17780 pycom10g10180 pycom10g10190
rosa_chinensis	RchiOBHm_Chr6g0245291
rosa_laevigata	RLG00000008495 RLG00000015310
rosa_roxburghii	Rroxscaffold_3G00242150 Rroxscaffold_7G00215290
rosa_rugosa	Rorug05G0513400
rosa_samantha	Rh6AG028800 Rh6BG024900 Rh6CG023000 Rh6DG023000
rosa_wichuraiana	Rw6G002420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	716, 1175
AccI	GTMKAC	1 cut(s)	694
AclWI	GGATC	3 cut(s)	775, 975, 1072
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	6 cut(s)	407, 470, 531, 674, 952, 1331
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	4 cut(s)	346, 778, 794, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	764, 1207
AhdI	GACNNNNNGTC	1 cut(s)	726
AjnI	CCWGG	2 cut(s)	411, 974
AluBI	AGCT	5 cut(s)	25, 452, 553, 880, 1087
AluI	AGCT	5 cut(s)	25, 452, 553, 880, 1087
Alw21I	GWGCWC	1 cut(s)	1348
Alw26I	GTCTC	1 cut(s)	1048
AlwI	GGATC	3 cut(s)	775, 975, 1072
Ama87I	CYCGRG	2 cut(s)	447, 947
AoxI	GGCC	2 cut(s)	414, 868
ApeKI	GCWGC	1 cut(s)	877
ApoI	RAATTY	6 cut(s)	407, 470, 531, 674, 952, 1331
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AspS9I	GGNCC	2 cut(s)	580, 1136
AsuHPI	GGTGA	2 cut(s)	142, 539
AsuII	TTCGAA	1 cut(s)	901
AvaI	CYCGRG	2 cut(s)	447, 947
AvaII	GGWCC	2 cut(s)	580, 1136
BarI	GAAGNNNNNNTAC	4 cut(s)	1053, 1085, 1301, 1333
Bbv12I	GWGCWC	1 cut(s)	1348
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	4 cut(s)	431, 470, 1009, 1256
BciT130I	CCWGG	2 cut(s)	413, 976
BclI	TGATCA	1 cut(s)	1365
BcoDI	GTCTC	1 cut(s)	1048
BfaI	CTAG	5 cut(s)	197, 284, 369, 563, 609
BfmI	CTRYAG	1 cut(s)	723
BfuAI	ACCTGC	2 cut(s)	716, 1175
BisI	GCNGC	1 cut(s)	878
BlsI	GCNGC	1 cut(s)	879
Bme1390I	CCNGG	2 cut(s)	413, 976
Bme18I	GGWCC	2 cut(s)	580, 1136
BmeRI	GACNNNNNGTC	1 cut(s)	726
BmeT110I	CYCGRG	2 cut(s)	447, 947
BmgT120I	GGNCC	2 cut(s)	580, 1136
BmiI	GGNNCC	2 cut(s)	1121, 1238
BmrFI	CCNGG	2 cut(s)	413, 976
BmsI	GCATC	1 cut(s)	431
BpmI	CTGGAG	2 cut(s)	901, 958
Bpu10I	CCTNAGC	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	1363
BsaHI	GRCGYC	1 cut(s)	567
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 782, 812, 899, 929
Bsc4I	CCNNNNNNNGG	2 cut(s)	764, 1207
Bse1I	ACTGG	4 cut(s)	220, 529, 871, 994
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	413, 976
BseGI	GGATG	1 cut(s)	1216
BseLI	CCNNNNNNNGG	2 cut(s)	764, 1207
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	4 cut(s)	187, 260, 294, 1097
BseNI	ACTGG	4 cut(s)	220, 529, 871, 994
BseXI	GCAGC	1 cut(s)	889
BshFI	GGCC	2 cut(s)	416, 870
BsiHKAI	GWGCWC	1 cut(s)	1348
BsiHKCI	CYCGRG	2 cut(s)	447, 947
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	2 cut(s)	764, 1207
BsmAI	GTCTC	1 cut(s)	1048
BsmFI	GGGAC	1 cut(s)	634
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	416, 870
BsoBI	CYCGRG	2 cut(s)	447, 947
Bsp119I	TTCGAA	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	1348
Bsp143I	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
BspANI	GGCC	2 cut(s)	416, 870
BspCNI	CTCAG	4 cut(s)	186, 261, 295, 1096
BspLI	GGNNCC	2 cut(s)	1121, 1238
BspMAI	CTGCAG	1 cut(s)	727
BspMI	ACCTGC	2 cut(s)	716, 1175
BspPI	GGATC	3 cut(s)	775, 975, 1072
BspT104I	TTCGAA	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	4 cut(s)	220, 529, 871, 994
BssMI	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
BssNI	GRCGYC	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	413, 976
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	567
BstBAI	YACGTR	1 cut(s)	1363
BstBI	TTCGAA	1 cut(s)	901
BstDEI	CTNAG	9 cut(s)	173, 269, 303, 341, 418, 549, 771, 1083, 1400
BstF5I	GGATG	1 cut(s)	1216
BstKTI	GATC	6 cut(s)	196, 770, 867, 970, 1067, 1368
BstMAI	GTCTC	1 cut(s)	1048
BstMBI	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstNI	CCWGG	2 cut(s)	413, 976
BstSCI	CCNGG	2 cut(s)	411, 974
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	1 cut(s)	889
BstX2I	RGATCY	2 cut(s)	767, 967
BstYI	RGATCY	2 cut(s)	767, 967
BsuRI	GGCC	2 cut(s)	416, 870
BtsCI	GGATG	1 cut(s)	1216
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	2 cut(s)	716, 1175
Cfr13I	GGNCC	2 cut(s)	580, 1136
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	4 cut(s)	345, 777, 793, 1048
CviAII	CATG	7 cut(s)	154, 243, 364, 463, 887, 1217, 1233
CviQI	GTAC	4 cut(s)	345, 777, 793, 1048
DdeI	CTNAG	9 cut(s)	173, 269, 303, 341, 418, 549, 771, 1083, 1400
DpnI	GATC	6 cut(s)	195, 769, 866, 969, 1066, 1367
DpnII	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
DriI	GACNNNNNGTC	1 cut(s)	726
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	630
Eam1105I	GACNNNNNGTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	630
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	2 cut(s)	580, 1136
Eco88I	CYCGRG	2 cut(s)	447, 947
EcoRI	GAATTC	2 cut(s)	407, 470
EcoRII	CCWGG	2 cut(s)	411, 974
EcoRV	GATATC	1 cut(s)	939
FaeI	CATG	7 cut(s)	157, 246, 367, 466, 890, 1220, 1236
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	7 cut(s)	153, 242, 363, 462, 886, 1216, 1232
FbaI	TGATCA	1 cut(s)	1365
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	1 cut(s)	878
FokI	GGATG	1 cut(s)	1223
Fsp4HI	GCNGC	1 cut(s)	878
FspBI	CTAG	5 cut(s)	197, 284, 369, 563, 609
GluI	GCNGC	1 cut(s)	878
GsuI	CTGGAG	2 cut(s)	901, 958
HaeIII	GGCC	2 cut(s)	416, 870
HgaI	GACGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	7 cut(s)	157, 246, 367, 466, 890, 1220, 1236
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	4 cut(s)	480, 622, 653, 979
HphI	GGTGA	2 cut(s)	142, 539
Hpy166II	GTNNAC	4 cut(s)	179, 695, 987, 1139
Hpy188I	TCNGA	1 cut(s)	715
Hpy188III	TCNNGA	7 cut(s)	65, 404, 556, 650, 929, 949, 1058
Hpy8I	GTNNAC	4 cut(s)	179, 695, 987, 1139
HpyAV	CCTTC	8 cut(s)	59, 62, 281, 340, 1055, 1109, 1389, 1398
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	1362
HpyCH4V	TGCA	7 cut(s)	99, 246, 396, 725, 877, 1109, 1184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	9 cut(s)	173, 269, 303, 341, 418, 549, 771, 1083, 1400
HpySE526I	ACGT	1 cut(s)	1362
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	7 cut(s)	157, 246, 367, 466, 890, 1220, 1236
Ksp22I	TGATCA	1 cut(s)	1365
Kzo9I	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
LmnI	GCTCC	3 cut(s)	9, 51, 1092
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	5 cut(s)	197, 284, 369, 563, 609
MaeII	ACGT	1 cut(s)	1362
MaeIII	GTNAC	3 cut(s)	509, 515, 1187
MalI	GATC	6 cut(s)	195, 769, 866, 969, 1066, 1367
MboI	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
MboII	GAAGA	2 cut(s)	482, 617
MflI	RGATCY	2 cut(s)	767, 967
MhlI	GDGCHC	1 cut(s)	1348
MlyI	GAGTC	2 cut(s)	474, 616
MmeI	TCCRAC	3 cut(s)	322, 593, 681
MnlI	CCTC	7 cut(s)	221, 344, 552, 952, 956, 1070, 1201
MseI	TTAA	4 cut(s)	137, 159, 1020, 1038
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	413, 976
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	413, 976
MwoI	GCNNNNNNNGC	1 cut(s)	559
NdeII	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
NlaIII	CATG	7 cut(s)	157, 246, 367, 466, 890, 1220, 1236
NlaIV	GGNNCC	2 cut(s)	1121, 1238
NmeAIII	GCCGAG	1 cut(s)	1236
NmuCI	GTSAC	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	901
PaeR7I	CTCGAG	1 cut(s)	947
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	653, 979
PfoI	TCCNGGA	1 cut(s)	974
PkrI	GCNGC	1 cut(s)	879
PleI	GAGTC	2 cut(s)	474, 616
PpsI	GAGTC	2 cut(s)	474, 616
Ppu21I	YACGTR	1 cut(s)	1363
Psp6I	CCWGG	2 cut(s)	411, 974
PspGI	CCWGG	2 cut(s)	411, 974
PspN4I	GGNNCC	2 cut(s)	1121, 1238
PspPI	GGNCC	2 cut(s)	580, 1136
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	767, 967
RsaI	GTAC	4 cut(s)	346, 778, 794, 1049
RsaNI	GTAC	4 cut(s)	345, 777, 793, 1048
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	4 cut(s)	137, 159, 1020, 1038
SatI	GCNGC	1 cut(s)	878
Sau3AI	GATC	6 cut(s)	193, 767, 864, 967, 1064, 1365
Sau96I	GGNCC	2 cut(s)	580, 1136
SchI	GAGTC	2 cut(s)	474, 616
ScrFI	CCNGG	2 cut(s)	413, 976
SduI	GDGCHC	1 cut(s)	1348
SfaNI	GCATC	1 cut(s)	431
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	947
SfuI	TTCGAA	1 cut(s)	901
SinI	GGWCC	2 cut(s)	580, 1136
SlaI	CTCGAG	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	554, 947
SmoI	CTYRAG	2 cut(s)	554, 947
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	5 cut(s)	197, 284, 369, 563, 609
StyD4I	CCNGG	2 cut(s)	411, 974
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	1365
TaqI	TCGA	4 cut(s)	265, 474, 901, 948
TatI	WGTACW	1 cut(s)	792
TfiI	GAWTC	2 cut(s)	653, 979
Tru1I	TTAA	4 cut(s)	137, 159, 1020, 1038
Tru9I	TTAA	4 cut(s)	137, 159, 1020, 1038
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	877
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	7 cut(s)	41, 107, 392, 814, 1221, 1233, 1252
TspGWI	ACGGA	2 cut(s)	780, 1335
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	580, 1136
XapI	RAATTY	6 cut(s)	407, 470, 531, 674, 952, 1331
XhoI	CTCGAG	1 cut(s)	947
XmiI	GTMKAC	1 cut(s)	694
XspI	CTAG	5 cut(s)	197, 284, 369, 563, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.