AT2G22410

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9509016 .. 9511231
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22410.1

Sequence Viewer

Length: 2046 bp
ATGAACATATCGAAGGCCAAGCTTCTTCTTCTTCCTCCTCCTCTTACACCAAAACTGAATCGTTCTCTGTATTCTCATTCTCAGCGTCGTACTCGATCACTTCCTCATCACAGAGACAAACCCATAAACTGGAACTCTACTCACAGTTTCGTTCTACACAATCCTCTACTTTCATTGCTCGAAAAATGCAAACTTTTGTTACATTTGAAGCAAATTCAAGCTCAGATGATAATAAATGGTTTGATTCTGGACCCATTTGCTTCAAGCCGGTTAATTGCTTTCTGTGCATTATCGGAATCTCGATATCTCGATTACTCTGTGAAGATTCTTAAAGGTATTGAGAACCCTAACATATTCTCTTGGAATGTAACGATTAGAGGATTCTCTGAGAGTGAGAATCCTAAAGAATCGTTTTTGCTCTATAAGCAGATGCTTAGACATGGTTGTTGTGAGTCCAGACCGGATCATTTCACTTACCCTGTTTTGTTTAAGGTTTGTGCTGATCTTAGGTTGAGTAGTTTAGGTCATATGATTCTTGGGCATGTTCTTAAGCTAAGATTGGAATTGGTTAGTCATGTGCATAATGCGTCGATTCATATGTTTGCTTCTTGTGGTGATATGGAAAATGCGAGGAAGGTGTTCGATGAAAGTCCTGTGAGGGATTTGGTTTCTTGGAATTGTTTGATTAATGGGTATAAGAAGATTGGTGAGGCGGAGAAGGCGATATATGTATATAAGCTAATGGAATCTGAAGGAGTTAAGCCGGATGATGTGACGATGATTGGGTTGGTTTCTTCGTGTTCAATGTTGGGAGATTTGAATCGTGGGAAAGAGTTTTATGAATACGTAAAAGAAAATGGACTGAGAATGACGATTCCTCTTGTAAATGCTTTGATGGATATGTTCTCGAAATGCGGAGATATTCACGAGGCACGAAGGATATTTGATAACTTGGAAAAGAGAACAATTGTGTCGTGGACTACAATGATTTCAGGATATGCTAGATGTGGTTTGCTTGATGTTTCAAGGAAGCTTTTTGATGATATGGAAGAAAAAGATGTTGTACTGTGGAATGCAATGATCGGTGGATCAGTCCAAGCCAAGCGTGGTCAAGACGCTTTGGCATTGTTCCAGGAGATGCAAACAAGTAACACTAAGCCTGACGAAATCACCATGATACATTGCCTATCTGCTTGTTCTCAGCTTGGTGCTCTTGATGTTGGCATTTGGATTCATCGTTACATCGAGAAATACAGTCTTAGTCTCAATGTTGCGCTAGGAACTTCATTGGTTGACATGTACGCCAAATGTGGTAACATCTCAGAAGCTCTCAGTGTTTTTCACGGAATTCAAACAAGAAACTCGCTTACATACACAGCGATAATCGGAGGTTTAGCCCTTCATGGAGATGCATCCACTGCTATATCATACTTCAACGAAATGATTGATGCAGGGATTGCCCCAGACGAGATCACTTTCATAGGACTATTATCAGCATGTTGCCATGGTGGAATGATCCAAACAGGCCGTGATTATTTCTCTCAGATGAAGTCTAGATTCAACCTAAACCCTCAATTGAAACATTACTCTATAATGGTAGATCTGCTAGGGAGAGCCGGGCTATTAGAAGAAGCAGACAGGCTCATGGAAAGTATGCCAATGGAGGCAGATGCTGCGGTTTGGGGAGCATTATTATTCGGTTGCAGGATGCACGGTAATGTTGAGCTGGGAGAGAAAGCGGCTAAGAAACTTCTCGAACTTGATCCCAGTGATAGCGGGATCTATGTGTTGTTGGATGGCATGTATGGAGAGGCTAATATGTGGGAAGATGCAAAGAGAGCGAGGAGGATGATGAACGAGAGAGGTGTAGAGAAGATTCCTGGTTGTAGTTCCATTGAGGTTAATGGAATTGTCTGTGAGTTCATCGTTAGGGATAAATCGAGACCGGAATCTGAGAAAATTTATGATCGCTTACATTGTCTTGGAAGGCATATGAGGAGCTCGTTGAGTGTACTATTTTCGGAATATGAGATTACTAATAACTAA

Protein Analysis

681

Amino Acids

76.71

Weight (kDa)

6.77

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 116 - 167 3e-08 PPR repeat family
PPR_2 PF13041 221 - 267 1.5e-10 PPR repeat family
PPR PF01535 223 - 253 1.6e-06 PPR repeat
PPR PF01535 324 - 353 9.3e-08 PPR repeat
PPR_2 PF13041 352 - 399 3.3e-09 PPR repeat family
PPR_2 PF13041 454 - 502 3.6e-10 PPR repeat family
E_motif PF20431 571 - 633 1.7e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AciI CCGC 5 cut(s) 713, 915, 1676, 1739, 1776
AclWI GGATC 5 cut(s) 471, 1096, 1510, 1757, 1787
AcsI RAATTY 3 cut(s) 213, 1347, 1959
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 4 cut(s) 91, 1065, 1301, 2013
AfiI CCNNNNNNNGG 1 cut(s) 129
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 1 cut(s) 1296
AjnI CCWGG 2 cut(s) 1131, 1879
AluBI AGCT 9 cut(s) 22, 221, 553, 739, 1033, 1204, 1328, 1726, 2001
AluI AGCT 9 cut(s) 22, 221, 553, 739, 1033, 1204, 1328, 1726, 2001
Alw21I GWGCWC 2 cut(s) 1213, 2003
Alw26I GTCTC 3 cut(s) 108, 1268, 1936
AlwI GGATC 5 cut(s) 471, 1096, 1510, 1757, 1787
AlwNI CAGNNNCTG 1 cut(s) 1673
AoxI GGCC 2 cut(s) 15, 1525
ApeKI GCWGC 1 cut(s) 1673
ApoI RAATTY 3 cut(s) 213, 1347, 1959
AseI ATTAAT 1 cut(s) 687
Asp700I GAANNNNTTC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 1276
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 1618
AsuHPI GGTGA 3 cut(s) 626, 719, 1162
AvaII GGWCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 2003
BauI CACGAG 1 cut(s) 926
Bbv12I GWGCWC 2 cut(s) 1213, 2003
BbvI GCAGC 1 cut(s) 1660
BccI CCATC 2 cut(s) 889, 1790
BceAI ACGGC 1 cut(s) 1512
BciT130I CCWGG 2 cut(s) 1133, 1881
BcnI CCSGG 1 cut(s) 1618
BcoDI GTCTC 3 cut(s) 108, 1268, 1936
BfaI CTAG 4 cut(s) 1002, 1277, 1554, 1607
BfrI CTTAAG 1 cut(s) 548
BglII AGATCT 1 cut(s) 1600
BisI GCNGC 2 cut(s) 1674, 1740
BlsI GCNGC 2 cut(s) 1675, 1741
Bme1390I CCNGG 3 cut(s) 1133, 1618, 1881
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 1133, 1618, 1881
BmrI ACTGGG 1 cut(s) 1761
BmsI GCATC 8 cut(s) 420, 1128, 1399, 1421, 1438, 1660, 1698, 1819
BmuI ACTGGG 1 cut(s) 1761
BpuMI CCSGG 1 cut(s) 1618
BsaAI YACGTR 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 819
BsaI GGTCTC 1 cut(s) 1936
BsaJI CCNNGG 1 cut(s) 1504
BsaWI WCCGGW 2 cut(s) 460, 1945
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 134, 1767
Bse3DI GCAATG 3 cut(s) 173, 1083, 1180
Bse8I GATNNNNATC 1 cut(s) 819
BseBI CCWGG 2 cut(s) 1133, 1881
BseDI CCNNGG 1 cut(s) 1504
BseGI GGATG 5 cut(s) 772, 1412, 1713, 1801, 1854
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 3 cut(s) 173, 1083, 1180
BseMII CTCAG 9 cut(s) 95, 236, 378, 854, 1214, 1335, 1345, 1556, 1944
BseNI ACTGG 2 cut(s) 134, 1767
BseRI GAGGAG 4 cut(s) 27, 30, 1858, 2011
BseXI GCAGC 1 cut(s) 1660
BseYI CCCAGC 1 cut(s) 1726
BshFI GGCC 2 cut(s) 17, 1527
BsiHKAI GWGCWC 2 cut(s) 1213, 2003
BsiSI CCGG 5 cut(s) 268, 461, 764, 1617, 1946
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 3 cut(s) 108, 1268, 1936
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 2 cut(s) 17, 1527
Bso31I GGTCTC 1 cut(s) 1936
Bsp1286I GDGCHC 2 cut(s) 1213, 2003
Bsp19I CCATGG 1 cut(s) 1504
BspACI CCGC 5 cut(s) 713, 915, 1676, 1739, 1776
BspANI GGCC 2 cut(s) 17, 1527
BspCNI CTCAG 9 cut(s) 94, 235, 379, 855, 1213, 1334, 1344, 1555, 1945
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 5 cut(s) 471, 1096, 1510, 1757, 1787
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 1936
BsrDI GCAATG 3 cut(s) 173, 1083, 1180
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 2 cut(s) 134, 1767
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 1504
BssSI CACGAG 1 cut(s) 926
BssT1I CCWWGG 1 cut(s) 1504
Bst2BI CACGAG 1 cut(s) 926
Bst2UI CCWGG 2 cut(s) 1133, 1881
Bst4CI ACNGT 4 cut(s) 146, 1068, 1256, 1715
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 3 cut(s) 1418, 1457, 1673
BstBAI YACGTR 1 cut(s) 847
BstDSI CCRYGG 1 cut(s) 1504
BstF5I GGATG 5 cut(s) 772, 1412, 1713, 1801, 1854
BstHHI GCGC 1 cut(s) 1276
BstMAI GTCTC 3 cut(s) 108, 1268, 1936
BstMWI GCNNNNNNNGC 7 cut(s) 284, 424, 719, 1418, 1457, 1673, 1838
BstNI CCWGG 2 cut(s) 1133, 1881
BstNSI RCATGY 4 cut(s) 545, 1300, 1500, 1804
BstSCI CCNGG 3 cut(s) 1131, 1616, 1879
BstSNI TACGTA 1 cut(s) 847
BstV1I GCAGC 1 cut(s) 1660
BstX2I RGATCY 2 cut(s) 1600, 1779
BstYI RGATCY 2 cut(s) 1600, 1779
BsuRI GGCC 2 cut(s) 17, 1527
BtgI CCRYGG 1 cut(s) 1504
BtsCI GGATG 5 cut(s) 772, 1412, 1713, 1801, 1854
BtsI GCAGTG 1 cut(s) 1416
BtsIMutI CAGTG 3 cut(s) 1339, 1416, 1774
CaiI CAGNNNCTG 1 cut(s) 1673
CfoI GCGC 1 cut(s) 1276
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 3 cut(s) 74, 576, 1124
Csp6I GTAC 4 cut(s) 90, 1064, 1300, 2012
CviQI GTAC 4 cut(s) 90, 1064, 1300, 2012
EciI GGCGGA 1 cut(s) 728
Ecl136II GAGCTC 1 cut(s) 2001
Eco105I TACGTA 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 1504
Eco24I GRGCYC 1 cut(s) 2003
Eco31I GGTCTC 1 cut(s) 1936
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 2001
Eco57I CTGAAG 1 cut(s) 771
EcoICRI GAGCTC 1 cut(s) 2001
EcoRI GAATTC 1 cut(s) 1347
EcoRII CCWGG 2 cut(s) 1131, 1879
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 1504
EcoT22I ATGCAT 1 cut(s) 1414
EcoT38I GRGCYC 1 cut(s) 2003
ErhI CCWWGG 1 cut(s) 1504
FauI CCCGC 1 cut(s) 1769
FauNDI CATATG 3 cut(s) 528, 597, 1992
Fnu4HI GCNGC 2 cut(s) 1674, 1740
FokI GGATG 5 cut(s) 779, 1399, 1720, 1808, 1861
FriOI GRGCYC 1 cut(s) 2003
Fsp4HI GCNGC 2 cut(s) 1674, 1740
FspBI CTAG 4 cut(s) 1002, 1277, 1554, 1607
GlaI GCGC 1 cut(s) 1275
GluI GCNGC 2 cut(s) 1674, 1740
GsaI CCCAGC 1 cut(s) 1730
HaeIII GGCC 2 cut(s) 17, 1527
HapII CCGG 5 cut(s) 268, 461, 764, 1617, 1946
HgaI GACGC 3 cut(s) 74, 576, 1124
HhaI GCGC 1 cut(s) 1276
Hin6I GCGC 1 cut(s) 1274
HinP1I GCGC 1 cut(s) 1274
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HindIII AAGCTT 2 cut(s) 20, 1031
HpaII CCGG 5 cut(s) 268, 461, 764, 1617, 1946
HphI GGTGA 3 cut(s) 626, 719, 1162
Hpy166II GTNNAC 3 cut(s) 978, 1294, 2012
Hpy188I TCNGA 9 cut(s) 225, 295, 388, 751, 1324, 1388, 1545, 1954, 2023
Hpy8I GTNNAC 3 cut(s) 978, 1294, 2012
Hpy99I CGWCG 2 cut(s) 90, 592
HpyAV CCTTC 7 cut(s) 7, 628, 712, 746, 930, 1409, 1980
HpyCH4III ACNGT 4 cut(s) 146, 1068, 1256, 1715
HpyCH4IV ACGT 1 cut(s) 846
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 424, 719, 1418, 1457, 1673, 1838
HpySE526I ACGT 1 cut(s) 846
HspAI GCGC 1 cut(s) 1274
LmnI GCTCC 2 cut(s) 1685, 1998
Lsp1109I GCAGC 1 cut(s) 1660
LweI GCATC 8 cut(s) 420, 1128, 1399, 1421, 1438, 1660, 1698, 1819
MaeI CTAG 4 cut(s) 1002, 1277, 1554, 1607
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 6 cut(s) 198, 367, 772, 1148, 1238, 1313
MfeI CAATTG 2 cut(s) 966, 1574
MflI RGATCY 2 cut(s) 1600, 1779
MhlI GDGCHC 2 cut(s) 1213, 2003
MluCI AATT 9 cut(s) 213, 273, 563, 676, 966, 1347, 1574, 1908, 1959
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 1773
Mph1103I ATGCAT 1 cut(s) 1414
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 7 cut(s) 272, 330, 489, 549, 687, 759, 1902
MslI CAYNNNNRTG 2 cut(s) 1407, 1716
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 5 cut(s) 268, 461, 764, 1617, 1946
MspR9I CCNGG 3 cut(s) 1133, 1618, 1881
MunI CAATTG 2 cut(s) 966, 1574
Mva1269I GAATGC 1 cut(s) 1078
MvaI CCWGG 2 cut(s) 1133, 1881
MwoI GCNNNNNNNGC 7 cut(s) 284, 424, 719, 1418, 1457, 1673, 1838
NciI CCSGG 1 cut(s) 1618
NcoI CCATGG 1 cut(s) 1504
NdeI CATATG 3 cut(s) 528, 597, 1992
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 772
NsiI ATGCAT 1 cut(s) 1414
NspI RCATGY 4 cut(s) 545, 1300, 1500, 1804
PciI ACATGT 1 cut(s) 1296
PctI GAATGC 1 cut(s) 1078
PdmI GAANNNNTTC 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 1131
PkrI GCNGC 2 cut(s) 1675, 1741
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 847
PscI ACATGT 1 cut(s) 1296
PshBI ATTAAT 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 2003
Psp6I CCWGG 2 cut(s) 1131, 1879
PspFI CCCAGC 1 cut(s) 1726
PspGI CCWGG 2 cut(s) 1131, 1879
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 1673
PsuI RGATCY 2 cut(s) 1600, 1779
RsaI GTAC 4 cut(s) 91, 1065, 1301, 2013
RsaNI GTAC 4 cut(s) 90, 1064, 1300, 2012
RseI CAYNNNNRTG 2 cut(s) 1407, 1716
SacI GAGCTC 1 cut(s) 2003
SaqAI TTAA 7 cut(s) 272, 330, 489, 549, 687, 759, 1902
SatI GCNGC 2 cut(s) 1674, 1740
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 3 cut(s) 1133, 1618, 1881
SduI GDGCHC 2 cut(s) 1213, 2003
SfaNI GCATC 8 cut(s) 420, 1128, 1399, 1421, 1438, 1660, 1698, 1819
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 1407, 1716
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SnaBI TACGTA 1 cut(s) 847
Sse9I AATT 9 cut(s) 213, 273, 563, 676, 966, 1347, 1574, 1908, 1959
SsiI CCGC 5 cut(s) 713, 915, 1676, 1739, 1776
SspMI CTAG 4 cut(s) 1002, 1277, 1554, 1607
SstI GAGCTC 1 cut(s) 2003
StyD4I CCNGG 3 cut(s) 1131, 1616, 1879
StyI CCWWGG 1 cut(s) 1504
TaaI ACNGT 4 cut(s) 146, 1068, 1256, 1715
TaiI ACGT 1 cut(s) 849
TasI AATT 9 cut(s) 213, 273, 563, 676, 966, 1347, 1574, 1908, 1959
TatI WGTACW 2 cut(s) 1063, 2011
TauI GCSGC 1 cut(s) 1742
Tru1I TTAA 7 cut(s) 272, 330, 489, 549, 687, 759, 1902
Tru9I TTAA 7 cut(s) 272, 330, 489, 549, 687, 759, 1902
TscAI CASTG 3 cut(s) 1339, 1423, 1774
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 1 cut(s) 1673
Tsp45I GTSAC 1 cut(s) 772
TspGWI ACGGA 1 cut(s) 1359
TspRI CASTG 3 cut(s) 1339, 1423, 1774
Van91I CCANNNNNTGG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 250
VspI ATTAAT 1 cut(s) 687
XapI RAATTY 3 cut(s) 213, 1347, 1959
XbaI TCTAGA 1 cut(s) 1553
XceI RCATGY 4 cut(s) 545, 1300, 1500, 1804
XcmI CCANNNNNNNNNTGG 1 cut(s) 1103
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 4 cut(s) 1002, 1277, 1554, 1607
Zsp2I ATGCAT 1 cut(s) 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.