Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014342

Physical Location & Seq

Genomic Coordinates Forward (+)

56227376 .. 56229645

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G033140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGCTGAGCCTCAAACCTCAACGTTTGGTTCCAAACCCGGTTTCTCACCGTCTCCTTTCTCTCTCAGCTCACAGACACAAGCCCACCAATTGGAGCACCACCACCCACAAATTTGTTCAAGCAAACCCACTTCTCTCCCTATTAGAAACCTGCAAATCCATGCCCCAGTTGAAGCAAATCCAAACCCAAATGATCATTACCGGCTTCATCTCGGACGGGTTCGCTTCTAGTCGCCTCATTGCCTTCTGTGCGCTTTCGGAGTGCCGAAATCTTCACTATGCCACCAAGATCCTGCACAATGTGCACGACCCAAATGCCTTCTCTTGGAATGTGGTCATCCGAGGGTTTTCGGAGACCGAAAATCCGAGAGGAGCAGTTGTAATGTATAGGGAAATGTTGAGAAATGGTGGGTCGAGACCGGATAATTATACTTACCCATTACTACTAGGAATCTGCTCTAATTTGTCGTTGAATTTGATGGGGCGTGTGGTTCTTGGCCATGTGTTCCAAGTGGGATTAGATTCTGATAGATTTGTTCGCAATGCGGCGATTCATATGTTTGTTTCATGCAGAGAATTAGGGGATGCACGTAAGGTGTTCGACGAAAGTTCCGTGAGAGACTTGGTGTCTTGGAATTCTCTGATTCATGGTTATGTGCGAAGTGGGTTGGCACGTGAGGCATTGCGGGTTTATGAGGAAATGGAGGTGGAGAGAGTTGAGCCGGATCAAGTGACAATGATTGGGGTGGTTTCTTCGTGTGCCCAACTTGAGGACTTGAGTCTCGGGAGGAAATTTCATGGGTTGATACGAGAGATTGGGCTAGGCTTGACTCCTCCTCTTGCCAATGCACTTATGGACATGTACGCCAAGTGTGGGAATCTTGAGGCAGCTCAAGCAGTATTTGACAACATGAAACAGAAAACCATTGTCTCCTGGACTACAATGATAGTGGGATATGCCAAACATGGGTTTTTGGAGATTGCTCACCGCCTTTTGTACGATGTGCCAGAGAATAATGTTGTGCCGTGGAATGCAATGATCGGTGGCTATGTGCAAGCTAGACGTAGCAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAATCTAGGAACATAAGTCCTGATGAAATAACCATGGTTTGCTGCTTATCTGCATGCTCACAACTTGGAGCAGTTGATGTTGGAATATGGATTCACCATTATATTGAAAAACACGAGCTTTCTCTCAACGTTGCTTTGGGAACTGCCCTTGTTGACATGTATGCTAAGTGTGGGAACATCACTAAAGCTCTCAATATTTTCTCGGACATGCCAGGAAAAAATTGTTTCACTTGGACATCTATCATTTGTGGTTTAGCCCTTAATGGACATGCACTTGATGCTATATCTTACTTTGAAGAGATGATAAATACGGGACTGAAGCCTGATGAGATCACGTTTCTTGGAGTATTATCAGCATGTTGCCATGGAGGTTTGGTTGAAGAAGGCCGAAAGTATTTTTCCTTAATGAACACTAAATTCAATATCTGCCCGAAACTTAAACATTACTCTTGCATGGTGGACCTTCTAGGTAGGGCTGGTCTTTTGCAAGAAGCAGCGGATCTTATTAATAGCATGCCAATCAAGGCAGATGCTGTGGTGTGGGGTGCATTATTCTTTGCTTGTTATATTCACAAAAGTGTTTTGATGGGAGAAAGAGCAGCTTCCAAGCTTCTTGAGTTGGACCCCCATGATAGTGGAATTTATGTTTTGCTTGCAAAAATGTATAGGGAATTGAATATGTGGGAGAAGGCAGAGCAGGCAAAGAAGATGATGAAGGAGAGAGGACTGGAGAAGACTCCTGGTTGTAGCTCAATTGAGGTGAATGGCAGTGTGTGCGAGTTCATTGTCAGAGACAAATCACATCCTCATTCGAAACAGATATATGATTGCTTATGTCAGTTAACAAGACAAATGGATCCGGTGGGTGGTATATCTGAAGTTCCTGCACTTTGGGATGACTCTCTCCTTGCTGATGAATTTAGGCGAAACTTTACTAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 DYW_deaminase PPR PPR_2

Protein Analysis

680

Amino Acids

76.07

Weight (kDa)

7.08

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	9.1e-08	PPR repeat family
PPR_2	PF13041	207 - 254	8.5e-11	PPR repeat family
PPR	PF01535	209 - 237	2.5e-08	PPR repeat
PPR_2	PF13041	339 - 386	1.6e-12	PPR repeat family
PPR	PF01535	342 - 371	9.5e-08	PPR repeat
PPR_2	PF13041	440 - 488	6e-09	PPR repeat family
E_motif	PF20431	558 - 619	7.1e-16	E motif
Eplus_motif	PF20430	625 - 651	3.6e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22410
fragaria_vesca	FvH4_3g29070
malus_domestica	MD03G1178400.v1.1
prunus_persica	Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0051471
rosa_laevigata	RLG00000034874
rosa_multiflora	Rmu_sc0023383.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027080
rosa_rugosa	Rorug05G0279100
rosa_samantha	Rh5CG387100
rosa_wichuraiana	Rw5G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2028
Acc36I	ACCTGC	2 cut(s)	158, 2028
AccB7I	CCANNNNNTGG	1 cut(s)	90
AciI	CCGC	4 cut(s)	545, 685, 988, 1595
AclI	AACGTT	2 cut(s)	22, 1227
AclWI	GGATC	5 cut(s)	283, 732, 1605, 1949, 1962
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	7 cut(s)	110, 472, 634, 791, 1514, 1737, 2015
AcuI	CTGAAG	2 cut(s)	1436, 1995
AcvI	CACGTG	1 cut(s)	674
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	863, 998
AfiI	CCNNNNNNNGG	6 cut(s)	90, 324, 769, 873, 966, 1964
AflIII	ACRYGT	2 cut(s)	858, 1254
AgsI	TTSAA	8 cut(s)	119, 172, 472, 1205, 1394, 1478, 1519, 1774
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	3 cut(s)	932, 1309, 1837
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	1674
AluBI	AGCT	8 cut(s)	68, 890, 1058, 1216, 1286, 1700, 1708, 1848
AluI	AGCT	8 cut(s)	68, 890, 1058, 1216, 1286, 1700, 1708, 1848
Alw21I	GWGCWC	2 cut(s)	98, 306
Alw26I	GTCTC	7 cut(s)	56, 347, 409, 612, 785, 934, 1884
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	5 cut(s)	283, 732, 1605, 1949, 1962
AlwNI	CAGNNNCTG	1 cut(s)	1631
Ama87I	CYCGRG	1 cut(s)	782
AoxI	GGCC	2 cut(s)	496, 1483
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	887, 1140, 1592, 1697
ApoI	RAATTY	7 cut(s)	110, 472, 634, 791, 1514, 1737, 2015
AseI	ATTAAT	1 cut(s)	1605
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	1558, 1720
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	4 cut(s)	38, 977, 1184, 1870
AsuII	TTCGAA	1 cut(s)	1910
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	2 cut(s)	1558, 1720
BaeGI	GKGCMC	2 cut(s)	306, 763
BalI	TGGCCA	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	1954
BauI	CACGAG	1 cut(s)	1211
BbrPI	CACGTG	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	1838
Bbv12I	GWGCWC	2 cut(s)	98, 306
BbvI	GCAGC	4 cut(s)	899, 1127, 1604, 1709
BccI	CCATC	2 cut(s)	472, 1678
BceAI	ACGGC	1 cut(s)	1009
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	3 cut(s)	934, 1311, 1839
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	7 cut(s)	56, 347, 409, 612, 785, 934, 1884
BfaI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2034
BfuAI	ACCTGC	2 cut(s)	158, 2028
BisI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	547, 889, 1142, 1594, 1699
Bme1390I	CCNGG	4 cut(s)	38, 934, 1311, 1839
Bme18I	GGWCC	2 cut(s)	1558, 1720
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	2 cut(s)	1558, 1720
BmiI	GGNNCC	3 cut(s)	30, 1722, 1956
BmrFI	CCNGG	4 cut(s)	38, 934, 1311, 1839
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	574, 1366, 1618
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	1838
BpmI	CTGGAG	1 cut(s)	1847
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	1910
BpuEI	CTTGAG	5 cut(s)	788, 796, 876, 902, 1733
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	2 cut(s)	590, 674
BsaI	GGTCTC	2 cut(s)	347, 409
BsaJI	CCNNGG	4 cut(s)	340, 1025, 1131, 1462
BsaWI	WCCGGW	2 cut(s)	418, 1957
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 1458, 1488
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 324, 769, 873, 966, 1964
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	166, 1830
Bse3DI	GCAATG	4 cut(s)	237, 547, 680, 1041
BseBI	CCWGG	3 cut(s)	934, 1311, 1839
BseDI	CCNNGG	4 cut(s)	340, 1025, 1131, 1462
BseGI	GGATG	4 cut(s)	336, 589, 1900, 1999
BseLI	CCNNNNNNNGG	6 cut(s)	90, 324, 769, 873, 966, 1964
BseMI	GCAATG	4 cut(s)	237, 547, 680, 1041
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	166, 1830
BseRI	GAGGAG	3 cut(s)	384, 822, 825
BseSI	GKGCMC	2 cut(s)	306, 763
BseXI	GCAGC	4 cut(s)	899, 1127, 1604, 1709
BsgI	GTGCAG	2 cut(s)	278, 1968
BshFI	GGCC	2 cut(s)	498, 1485
BsiHKAI	GWGCWC	2 cut(s)	98, 306
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	5 cut(s)	38, 201, 419, 722, 1958
BslFI	GGGAC	1 cut(s)	1425
BslI	CCNNNNNNNGG	6 cut(s)	90, 324, 769, 873, 966, 1964
BsmAI	GTCTC	7 cut(s)	56, 347, 409, 612, 785, 934, 1884
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	1425
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	2 cut(s)	498, 1485
Bso31I	GGTCTC	2 cut(s)	347, 409
BsoBI	CYCGRG	1 cut(s)	782
Bsp119I	TTCGAA	1 cut(s)	1910
Bsp1286I	GDGCHC	3 cut(s)	98, 306, 763
Bsp143I	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	2 cut(s)	1131, 1462
BspACI	CCGC	4 cut(s)	545, 685, 988, 1595
BspANI	GGCC	2 cut(s)	498, 1485
BspCNI	CTCAG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	3 cut(s)	30, 1722, 1956
BspMI	ACCTGC	2 cut(s)	158, 2028
BspPI	GGATC	5 cut(s)	283, 732, 1605, 1949, 1962
BspT104I	TTCGAA	1 cut(s)	1910
BspTNI	GGTCTC	2 cut(s)	347, 409
BsrDI	GCAATG	4 cut(s)	237, 547, 680, 1041
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	166, 1830
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	340, 1025, 1131, 1462
BssMI	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
BssSI	CACGAG	1 cut(s)	1211
BssT1I	CCWWGG	2 cut(s)	1131, 1462
Bst2BI	CACGAG	1 cut(s)	1211
Bst2UI	CCWGG	3 cut(s)	934, 1311, 1839
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	1389
BstAPI	GCANNNNNTGC	3 cut(s)	301, 1376, 1872
BstBAI	YACGTR	2 cut(s)	590, 674
BstBI	TTCGAA	1 cut(s)	1910
BstC8I	GCNNGC	5 cut(s)	1056, 1153, 1613, 1752, 1797
BstDEI	CTNAG	3 cut(s)	5, 64, 1263
BstDSI	CCRYGG	3 cut(s)	1025, 1131, 1462
BstF5I	GGATG	4 cut(s)	336, 589, 1900, 1999
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	7 cut(s)	195, 291, 727, 1041, 1431, 1600, 1957
BstMAI	GTCTC	7 cut(s)	56, 347, 409, 612, 785, 934, 1884
BstMBI	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
BstMWI	GCNNNNNNNGC	7 cut(s)	248, 301, 677, 893, 1376, 1796, 1872
BstNI	CCWGG	3 cut(s)	934, 1311, 1839
BstNSI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
BstPAI	GACNNNNGTC	1 cut(s)	777
BstSCI	CCNGG	4 cut(s)	36, 932, 1309, 1837
BstSLI	GKGCMC	2 cut(s)	306, 763
BstV1I	GCAGC	4 cut(s)	899, 1127, 1604, 1709
BstV2I	GAAGAC	1 cut(s)	1838
BstX2I	RGATCY	3 cut(s)	288, 1597, 1954
BstXI	CCANNNNNNTGG	1 cut(s)	1733
BstYI	RGATCY	3 cut(s)	288, 1597, 1954
BsuRI	GGCC	2 cut(s)	498, 1485
BtgI	CCRYGG	3 cut(s)	1025, 1131, 1462
BtsCI	GGATG	4 cut(s)	336, 589, 1900, 1999
BtsI	GCAGTG	1 cut(s)	1873
BtsIMutI	CAGTG	1 cut(s)	1873
BveI	ACCTGC	2 cut(s)	158, 2028
Cac8I	GCNNGC	5 cut(s)	1056, 1153, 1613, 1752, 1797
CaiI	CAGNNNCTG	1 cut(s)	1631
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	1558, 1720
Csp6I	GTAC	2 cut(s)	862, 997
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviQI	GTAC	2 cut(s)	862, 997
DdeI	CTNAG	3 cut(s)	5, 64, 1263
DpnI	GATC	7 cut(s)	194, 290, 726, 1040, 1430, 1599, 1956
DpnII	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
DraIII	CACNNNGTG	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	1389
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	1389
Eco130I	CCWWGG	2 cut(s)	1131, 1462
Eco31I	GGTCTC	2 cut(s)	347, 409
Eco47I	GGWCC	2 cut(s)	1558, 1720
Eco57I	CTGAAG	2 cut(s)	1436, 1995
Eco72I	CACGTG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	782
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	3 cut(s)	932, 1309, 1837
EcoT14I	CCWWGG	2 cut(s)	1131, 1462
ErhI	CCWWGG	2 cut(s)	1131, 1462
Esp3I	CGTCTC	1 cut(s)	56
FalI	AAGNNNNNCTT	2 cut(s)	1684, 1716
FaqI	GGGAC	1 cut(s)	1425
FauI	CCCGC	1 cut(s)	678
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
FokI	GGATG	4 cut(s)	323, 596, 1887, 2006
Fsp4HI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
FspBI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2034
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
GsuI	CTGGAG	1 cut(s)	1847
HaeIII	GGCC	2 cut(s)	498, 1485
HapII	CCGG	5 cut(s)	38, 201, 419, 722, 1958
HhaI	GCGC	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	2 cut(s)	1252, 1941
HindII	GTYRAC	2 cut(s)	1252, 1941
HindIII	AAGCTT	1 cut(s)	1706
HpaI	GTTAAC	1 cut(s)	1941
HpaII	CCGG	5 cut(s)	38, 201, 419, 722, 1958
HphI	GGTGA	4 cut(s)	38, 977, 1184, 1870
Hpy166II	GTNNAC	4 cut(s)	304, 1252, 1558, 1941
Hpy188III	TCNNGA	6 cut(s)	414, 784, 881, 1091, 1118, 1712
Hpy8I	GTNNAC	4 cut(s)	304, 1252, 1558, 1941
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	6 cut(s)	253, 328, 1475, 1571, 1780, 1807
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	6 cut(s)	22, 589, 673, 1063, 1227, 1433
HpyF10VI	GCNNNNNNNGC	7 cut(s)	248, 301, 677, 893, 1376, 1796, 1872
HpyF3I	CTNAG	3 cut(s)	5, 64, 1263
HpySE526I	ACGT	6 cut(s)	22, 589, 673, 1063, 1227, 1433
HspAI	GCGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	1941
Kzo9I	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
LmnI	GCTCC	3 cut(s)	93, 371, 1166
Lsp1109I	GCAGC	4 cut(s)	899, 1127, 1604, 1709
LweI	GCATC	3 cut(s)	574, 1366, 1618
MaeI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2034
MaeII	ACGT	6 cut(s)	22, 589, 673, 1063, 1227, 1433
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	7 cut(s)	194, 290, 726, 1040, 1430, 1599, 1956
MboI	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
MboII	GAAGA	6 cut(s)	263, 744, 1406, 1490, 1816, 1843
MfeI	CAATTG	2 cut(s)	88, 1851
MflI	RGATCY	3 cut(s)	288, 1597, 1954
MhlI	GDGCHC	3 cut(s)	98, 306, 763
MlsI	TGGCCA	1 cut(s)	498
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	4 cut(s)	787, 823, 1828, 1991
MmeI	TCCRAC	2 cut(s)	1159, 1698
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	5 cut(s)	1359, 1502, 1536, 1605, 1940
MslI	CAYNNNNRTG	3 cut(s)	651, 1674, 1731
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	1595
MspI	CCGG	5 cut(s)	38, 201, 419, 722, 1958
MspR9I	CCNGG	4 cut(s)	38, 934, 1311, 1839
MunI	CAATTG	2 cut(s)	88, 1851
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	3 cut(s)	934, 1311, 1839
MwoI	GCNNNNNNNGC	7 cut(s)	248, 301, 677, 893, 1376, 1796, 1872
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	2 cut(s)	1131, 1462
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
NlaIV	GGNNCC	3 cut(s)	30, 1722, 1956
NmuCI	GTSAC	1 cut(s)	730
NspI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
NspV	TTCGAA	1 cut(s)	1910
OliI	CACNNNNGTG	1 cut(s)	1674
PaeI	GCATGC	2 cut(s)	1155, 1615
PagI	TCATGA	1 cut(s)	1090
PaqCI	CACCTGC	1 cut(s)	2028
PciI	ACATGT	2 cut(s)	858, 1254
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PctI	GAATGC	1 cut(s)	1036
PfeI	GAWTC	6 cut(s)	450, 521, 550, 643, 877, 1189
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	932
PkrI	GCNGC	5 cut(s)	547, 889, 1142, 1594, 1699
PleI	GAGTC	4 cut(s)	786, 823, 1828, 1991
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
PpsI	GAGTC	4 cut(s)	786, 823, 1828, 1991
Ppu21I	YACGTR	2 cut(s)	590, 674
PscI	ACATGT	2 cut(s)	858, 1254
PshAI	GACNNNNGTC	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	1605
Psp1406I	AACGTT	2 cut(s)	22, 1227
Psp6I	CCWGG	3 cut(s)	932, 1309, 1837
PspCI	CACGTG	1 cut(s)	674
PspGI	CCWGG	3 cut(s)	932, 1309, 1837
PspN4I	GGNNCC	3 cut(s)	30, 1722, 1956
PspPI	GGNCC	2 cut(s)	1558, 1720
PstNI	CAGNNNCTG	1 cut(s)	1631
PsuI	RGATCY	3 cut(s)	288, 1597, 1954
RsaI	GTAC	2 cut(s)	863, 998
RsaNI	GTAC	2 cut(s)	862, 997
RseI	CAYNNNNRTG	3 cut(s)	651, 1674, 1731
SaqAI	TTAA	5 cut(s)	1359, 1502, 1536, 1605, 1940
SatI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
Sau3AI	GATC	7 cut(s)	192, 288, 724, 1038, 1428, 1597, 1954
Sau96I	GGNCC	2 cut(s)	1558, 1720
SchI	GAGTC	4 cut(s)	787, 823, 1828, 1991
ScrFI	CCNGG	4 cut(s)	38, 934, 1311, 1839
SduI	GDGCHC	3 cut(s)	98, 306, 763
SfaNI	GCATC	3 cut(s)	574, 1366, 1618
SfuI	TTCGAA	1 cut(s)	1910
SinI	GGWCC	2 cut(s)	1558, 1720
SmiMI	CAYNNNNRTG	3 cut(s)	651, 1674, 1731
SmlI	CTYRAG	5 cut(s)	767, 775, 881, 891, 1712
SmoI	CTYRAG	5 cut(s)	767, 775, 881, 891, 1712
SphI	GCATGC	2 cut(s)	1155, 1615
SsiI	CCGC	4 cut(s)	545, 685, 988, 1595
SspI	AATATT	1 cut(s)	1294
SspMI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2034
StyD4I	CCNGG	4 cut(s)	36, 932, 1309, 1837
StyI	CCWWGG	2 cut(s)	1131, 1462
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	6 cut(s)	25, 592, 676, 1066, 1230, 1436
TaqI	TCGA	3 cut(s)	413, 600, 1910
TaqII	GACCGA	1 cut(s)	371
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	6 cut(s)	450, 521, 550, 643, 877, 1189
Tru1I	TTAA	5 cut(s)	1359, 1502, 1536, 1605, 1940
Tru9I	TTAA	5 cut(s)	1359, 1502, 1536, 1605, 1940
TscAI	CASTG	1 cut(s)	1873
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	4 cut(s)	887, 1140, 1592, 1697
Tsp45I	GTSAC	1 cut(s)	730
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	1 cut(s)	1873
Van91I	CCANNNNNTGG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	1558, 1720
VspI	ATTAAT	1 cut(s)	1605
XapI	RAATTY	7 cut(s)	110, 472, 634, 791, 1514, 1737, 2015
XceI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XspI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.