Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014342

Physical Location & Seq

Genomic Coordinates Reverse (-)

34083701 .. 34087965

Gene Structure 4265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGCTGAGCCTCAGACCTCAACGCTTGTTTCCAAACCCGGTTTCTCACCGTCTCCTTTCTCTCTCAGCTCACAGACACAAGCCCACCAATTGGAGCACCACCACCCACAAATTTGTTCAAGCAAACCCACTTCTCTCCCTATTAGAAACCTGCAAATCCATTCCCCAGTTGAAGCAAATCCAAACCCAAATGATCATTACCGGCTTCATCTCAGACGGGTTCGCTTCTAGTCGCCTCGTTGCCTTTTGTGCGCTTTCGGAGTGCCGAAATGTTCACTATGCCACCAAGATTCTGCACAATGTGCACGACCCAAATGCCTTCTCTTGGAATGTGGTCATGCGAGGGCTTTCGGAGGCTGAAAATCCGAGAGGAGCAGTTGTAATGTATAGGGAAATGTTGAGAAATGGTGGGTCGAGACCGGATAATTATACTTACCCATTACTACTAGGAATCTGCTCTAATTTGTCATTGAATTTGATGGGGCTTGTGGTTCTTGGCCATGTGTTCCAAGTGGGATTAGATTCTGATAGATTTGTTCGCAATGCGGCGATTCATATGTTTGTTTCATGCAGAGAATTAAGGGATGCACGTAAGGTGTTCGACGAAAGTTCTGTGAGAGACTTGGTGTCTTGGAATTCTCTGATTCATGGTTATGTGCGAAGTGGGTTGGCACGTGAGGCGTTGCGGGTTTATGAGGAAATGGAGGTGGAGAGAGTTGAGCCGGATCAAGTGACAATGATTGGGGTGGTTTCTTCGTGTGCCCAACTTGAGGACTTGAGTCTTGGGAGGAAATTTCATGGGTTGATACAAGAGAATGGGCTAGGCTTGACTCCTCCTCTTGCCAATGCACTTATGGACATGTACGCCAAGTGTGGGAATCTTGAGGCAGCTCAAGCATTATTTGACAACATGAAACAGAAAACCATCGTCTCATGGACTACAATGATAGTGGGATATGCCAAACATGGGTTTTTGGAGATTGCTCACTGCCTTTTGTACGAGGTTCCAGATAGTAATGTTGTGCCGTGGAATGCAATGATCGGTGGCTATGTGCAAGCTAGACGTAGCAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCTAGGAACATAAGTCCTGATGAAATAACCATGGTTTGCTGCTTATCTGCATGCTCACAACTTGGAGCAGTTGATGTTGGAATATGGATTCACCATTATATTGAAAAACATAATCTTTCTCTCAACGTTGCTTTGGGGACTGCTCTTGTTGACATGTATGCTAAGTGTGGGAACATCACAAAAGCTCTCAATATTTTCTCGGACATGCCAGGAAAGAATTGTTTCACTTGGACATCTATCATTTGTGGTTTAGCCCTTAATGGGCATGCACATGATGCTATATCTTACTTTGAAGAGATGATAAATACGGGACTGAAGCCCGATGAGATCACGTTTCTTGGAGTACTGTCAGCATGTTGCCATGGAGGTTTGGTTGAAGAAGGCCGAAAGTATTTTTCCTTAATGAACACTAAATTCAATATATGCCCGAAACTTAAACATTACTCTTGCATGGTGGACCTTCTAGGTAGGGCTGGTCTTTTGCAAGAAGCAGCAGATCTTATTAATAGCATGCCAATCAAGGCAGATGCCGTGGTGTGGGGTGCATTATTCTTTGCTTGTTATATTCACAAAAGTGTTTTGATGGGAGAAAGAGCAGCTTCCAAGCTTCTTGAGTTGGAACCCCATGATAGTGGAATTTATGTTTTGCTTGCAAAAATGTATAGGGAGTCGAATATGTGGGAGAAGGCAGAGCAGGCAAAGAAGATGATGAAGGAGAGAGGACTGGAGAAGACTCCTGGTTGTAGCTCAATTGAGGTGAATGGCAGTGTGTGCGAGTTCATTGTCAGAGACAAATCACATCCTCATTCGAAACAGATATATGATTGCTTATTTCAGATAACAAGACAAATGGATCCGGTGGGTGGTATATCTGAAGTTCCTGCACTTTGGGATGACTCTCTCCTTGGTGATGAAGTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 DYW_deaminase PPR PPR_2

Protein Analysis

674

Amino Acids

75.21

Weight (kDa)

6.68

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	1.5e-07	PPR repeat family
PPR_2	PF13041	207 - 254	8.4e-11	PPR repeat family
PPR	PF01535	209 - 237	2.5e-08	PPR repeat
PPR_2	PF13041	339 - 386	4.7e-12	PPR repeat family
PPR	PF01535	342 - 371	2.6e-07	PPR repeat
PPR_2	PF13041	440 - 488	1.1e-09	PPR repeat family
E_motif	PF20431	558 - 619	5.8e-16	E motif
Eplus_motif	PF20430	625 - 651	7.5e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22410
fragaria_vesca	FvH4_3g29070
malus_domestica	MD03G1178400.v1.1
prunus_persica	Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0051471
rosa_laevigata	RLG00000034874
rosa_multiflora	Rmu_sc0023383.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027080
rosa_rugosa	Rorug05G0279100
rosa_samantha	Rh5CG387100
rosa_wichuraiana	Rw5G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	90
AciI	CCGC	2 cut(s)	545, 685
AclI	AACGTT	1 cut(s)	1227
AclWI	GGATC	3 cut(s)	732, 1949, 1962
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	6 cut(s)	110, 472, 634, 791, 1514, 1737
AcuI	CTGAAG	2 cut(s)	1436, 1995
AcvI	CACGTG	1 cut(s)	674
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	3 cut(s)	863, 998, 1446
AfiI	CCNNNNNNNGG	8 cut(s)	90, 324, 769, 873, 966, 1362, 1638, 1964
AflIII	ACRYGT	2 cut(s)	858, 1254
AgsI	TTSAA	7 cut(s)	119, 172, 472, 1205, 1394, 1478, 1519
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	1309, 1837
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	1674
AluBI	AGCT	8 cut(s)	68, 890, 1058, 1103, 1286, 1700, 1708, 1848
AluI	AGCT	8 cut(s)	68, 890, 1058, 1103, 1286, 1700, 1708, 1848
Alw21I	GWGCWC	2 cut(s)	98, 306
Alw26I	GTCTC	5 cut(s)	56, 409, 612, 934, 1884
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	732, 1949, 1962
AoxI	GGCC	2 cut(s)	496, 1483
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	887, 1140, 1592, 1697
ApoI	RAATTY	6 cut(s)	110, 472, 634, 791, 1514, 1737
AseI	ATTAAT	1 cut(s)	1605
Asp700I	GAANNNNTTC	1 cut(s)	1322
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	1558
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	4 cut(s)	38, 1184, 1870, 2021
AsuII	TTCGAA	1 cut(s)	1910
AvaII	GGWCC	1 cut(s)	1558
BaeGI	GKGCMC	2 cut(s)	306, 763
BalI	TGGCCA	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	1954
BbrPI	CACGTG	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	1838
Bbv12I	GWGCWC	2 cut(s)	98, 306
BbvI	GCAGC	4 cut(s)	899, 1127, 1604, 1709
BccI	CCATC	3 cut(s)	472, 932, 1678
BceAI	ACGGC	2 cut(s)	1009, 1616
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	1311, 1839
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	5 cut(s)	56, 409, 612, 934, 1884
BfaI	CTAG	6 cut(s)	228, 446, 821, 1059, 1104, 1565
BfuAI	ACCTGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	1597
BisI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	547, 889, 1142, 1594, 1699
BmcAI	AGTACT	1 cut(s)	1446
Bme1390I	CCNGG	3 cut(s)	38, 1311, 1839
Bme18I	GGWCC	1 cut(s)	1558
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	1558
BmiI	GGNNCC	3 cut(s)	1005, 1722, 1956
BmrFI	CCNGG	3 cut(s)	38, 1311, 1839
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	574, 1366, 1618
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	1838
BpmI	CTGGAG	1 cut(s)	1847
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	1910
BpuEI	CTTGAG	5 cut(s)	788, 796, 876, 902, 1733
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	2 cut(s)	590, 674
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	5 cut(s)	1025, 1131, 1462, 1632, 2005
BsaWI	WCCGGW	2 cut(s)	418, 1957
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 1458, 1488
Bsc4I	CCNNNNNNNGG	8 cut(s)	90, 324, 769, 873, 966, 1362, 1638, 1964
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	166, 1830
Bse3DI	GCAATG	2 cut(s)	547, 1041
BseBI	CCWGG	2 cut(s)	1311, 1839
BseDI	CCNNGG	5 cut(s)	1025, 1131, 1462, 1632, 2005
BseGI	GGATG	3 cut(s)	589, 1900, 1999
BseLI	CCNNNNNNNGG	8 cut(s)	90, 324, 769, 873, 966, 1362, 1638, 1964
BseMI	GCAATG	2 cut(s)	547, 1041
BseMII	CTCAG	3 cut(s)	25, 78, 225
BseNI	ACTGG	2 cut(s)	166, 1830
BseRI	GAGGAG	3 cut(s)	384, 822, 825
BseSI	GKGCMC	2 cut(s)	306, 763
BseXI	GCAGC	4 cut(s)	899, 1127, 1604, 1709
BsgI	GTGCAG	2 cut(s)	278, 1968
BshFI	GGCC	2 cut(s)	498, 1485
BsiHKAI	GWGCWC	2 cut(s)	98, 306
BsiSI	CCGG	5 cut(s)	38, 201, 419, 722, 1958
BslFI	GGGAC	2 cut(s)	1252, 1425
BslI	CCNNNNNNNGG	8 cut(s)	90, 324, 769, 873, 966, 1362, 1638, 1964
BsmAI	GTCTC	5 cut(s)	56, 409, 612, 934, 1884
BsmBI	CGTCTC	2 cut(s)	56, 934
BsmFI	GGGAC	2 cut(s)	1252, 1425
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	2 cut(s)	498, 1485
Bso31I	GGTCTC	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	1910
Bsp1286I	GDGCHC	3 cut(s)	98, 306, 763
Bsp143I	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	2 cut(s)	1131, 1462
BspACI	CCGC	2 cut(s)	545, 685
BspANI	GGCC	2 cut(s)	498, 1485
BspCNI	CTCAG	3 cut(s)	24, 77, 224
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	3 cut(s)	1005, 1722, 1956
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	3 cut(s)	732, 1949, 1962
BspT104I	TTCGAA	1 cut(s)	1910
BspTNI	GGTCTC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	547, 1041
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	166, 1830
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	1025, 1131, 1462, 1632, 2005
BssMI	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
BssT1I	CCWWGG	3 cut(s)	1131, 1462, 2005
Bst2UI	CCWGG	2 cut(s)	1311, 1839
Bst4CI	ACNGT	2 cut(s)	50, 1449
Bst6I	CTCTTC	1 cut(s)	1389
BstAPI	GCANNNNNTGC	3 cut(s)	301, 1376, 1872
BstBAI	YACGTR	2 cut(s)	590, 674
BstBI	TTCGAA	1 cut(s)	1910
BstC8I	GCNNGC	7 cut(s)	1056, 1101, 1153, 1368, 1613, 1752, 1797
BstDEI	CTNAG	5 cut(s)	5, 11, 64, 211, 1263
BstDSI	CCRYGG	4 cut(s)	1025, 1131, 1462, 1632
BstF5I	GGATG	3 cut(s)	589, 1900, 1999
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	6 cut(s)	195, 727, 1041, 1431, 1600, 1957
BstMAI	GTCTC	5 cut(s)	56, 409, 612, 934, 1884
BstMBI	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
BstMWI	GCNNNNNNNGC	7 cut(s)	248, 301, 677, 893, 1376, 1796, 1872
BstNI	CCWGG	2 cut(s)	1311, 1839
BstNSI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
BstPAI	GACNNNNGTC	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	36, 1309, 1837
BstSLI	GKGCMC	2 cut(s)	306, 763
BstV1I	GCAGC	4 cut(s)	899, 1127, 1604, 1709
BstV2I	GAAGAC	1 cut(s)	1838
BstX2I	RGATCY	2 cut(s)	1597, 1954
BstXI	CCANNNNNNTGG	1 cut(s)	1733
BstYI	RGATCY	2 cut(s)	1597, 1954
BsuRI	GGCC	2 cut(s)	498, 1485
BtgI	CCRYGG	4 cut(s)	1025, 1131, 1462, 1632
BtsCI	GGATG	3 cut(s)	589, 1900, 1999
BtsI	GCAGTG	2 cut(s)	985, 1873
BtsIMutI	CAGTG	2 cut(s)	985, 1873
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	7 cut(s)	1056, 1101, 1153, 1368, 1613, 1752, 1797
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	1558
Csp6I	GTAC	3 cut(s)	862, 997, 1445
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviQI	GTAC	3 cut(s)	862, 997, 1445
DdeI	CTNAG	5 cut(s)	5, 11, 64, 211, 1263
DpnI	GATC	6 cut(s)	194, 726, 1040, 1430, 1599, 1956
DpnII	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
DraIII	CACNNNGTG	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	1389
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	1389
Eco130I	CCWWGG	3 cut(s)	1131, 1462, 2005
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	1558
Eco57I	CTGAAG	2 cut(s)	1436, 1995
Eco72I	CACGTG	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	1309, 1837
EcoT14I	CCWWGG	3 cut(s)	1131, 1462, 2005
ErhI	CCWWGG	3 cut(s)	1131, 1462, 2005
Esp3I	CGTCTC	2 cut(s)	56, 934
FalI	AAGNNNNNCTT	2 cut(s)	1684, 1716
FaqI	GGGAC	2 cut(s)	1252, 1425
FauI	CCCGC	1 cut(s)	678
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
FokI	GGATG	3 cut(s)	596, 1887, 2006
Fsp4HI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
FspBI	CTAG	6 cut(s)	228, 446, 821, 1059, 1104, 1565
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
GsuI	CTGGAG	1 cut(s)	1847
HaeIII	GGCC	2 cut(s)	498, 1485
HapII	CCGG	5 cut(s)	38, 201, 419, 722, 1958
HhaI	GCGC	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	1252
HindII	GTYRAC	1 cut(s)	1252
HindIII	AAGCTT	1 cut(s)	1706
HpaII	CCGG	5 cut(s)	38, 201, 419, 722, 1958
HphI	GGTGA	4 cut(s)	38, 1184, 1870, 2021
Hpy166II	GTNNAC	4 cut(s)	274, 304, 1252, 1558
Hpy188III	TCNNGA	6 cut(s)	414, 881, 1007, 1091, 1118, 1712
Hpy8I	GTNNAC	4 cut(s)	274, 304, 1252, 1558
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	5 cut(s)	328, 1475, 1571, 1780, 1807
HpyCH4III	ACNGT	2 cut(s)	50, 1449
HpyCH4IV	ACGT	5 cut(s)	589, 673, 1063, 1227, 1433
HpyF10VI	GCNNNNNNNGC	7 cut(s)	248, 301, 677, 893, 1376, 1796, 1872
HpyF3I	CTNAG	5 cut(s)	5, 11, 64, 211, 1263
HpySE526I	ACGT	5 cut(s)	589, 673, 1063, 1227, 1433
HspAI	GCGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
LmnI	GCTCC	3 cut(s)	93, 371, 1166
Lsp1109I	GCAGC	4 cut(s)	899, 1127, 1604, 1709
LweI	GCATC	3 cut(s)	574, 1366, 1618
MaeI	CTAG	6 cut(s)	228, 446, 821, 1059, 1104, 1565
MaeII	ACGT	5 cut(s)	589, 673, 1063, 1227, 1433
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	6 cut(s)	194, 726, 1040, 1430, 1599, 1956
MboI	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
MboII	GAAGA	5 cut(s)	744, 1406, 1490, 1816, 1843
MfeI	CAATTG	2 cut(s)	88, 1851
MflI	RGATCY	2 cut(s)	1597, 1954
MhlI	GDGCHC	3 cut(s)	98, 306, 763
MlsI	TGGCCA	1 cut(s)	498
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	5 cut(s)	787, 823, 1778, 1828, 1991
MmeI	TCCRAC	2 cut(s)	1159, 1698
Mox20I	TGGCCA	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	1322
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	5 cut(s)	578, 1359, 1502, 1536, 1605
MslI	CAYNNNNRTG	4 cut(s)	651, 1371, 1674, 1731
Msp20I	TGGCCA	1 cut(s)	498
MspI	CCGG	5 cut(s)	38, 201, 419, 722, 1958
MspR9I	CCNGG	3 cut(s)	38, 1311, 1839
MunI	CAATTG	2 cut(s)	88, 1851
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	2 cut(s)	1311, 1839
MwoI	GCNNNNNNNGC	7 cut(s)	248, 301, 677, 893, 1376, 1796, 1872
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	2 cut(s)	1131, 1462
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
NlaIV	GGNNCC	3 cut(s)	1005, 1722, 1956
NmuCI	GTSAC	1 cut(s)	730
NspI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
NspV	TTCGAA	1 cut(s)	1910
OliI	CACNNNNGTG	1 cut(s)	1674
PaeI	GCATGC	3 cut(s)	1155, 1370, 1615
PagI	TCATGA	1 cut(s)	1090
PciI	ACATGT	2 cut(s)	858, 1254
PctI	GAATGC	1 cut(s)	1036
PdmI	GAANNNNTTC	1 cut(s)	1322
PfeI	GAWTC	7 cut(s)	289, 450, 521, 550, 643, 877, 1189
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	5 cut(s)	547, 889, 1142, 1594, 1699
PleI	GAGTC	5 cut(s)	786, 823, 1777, 1828, 1991
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
PpsI	GAGTC	5 cut(s)	786, 823, 1777, 1828, 1991
Ppu21I	YACGTR	2 cut(s)	590, 674
PscI	ACATGT	2 cut(s)	858, 1254
PshAI	GACNNNNGTC	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	1605
Psp1406I	AACGTT	1 cut(s)	1227
Psp6I	CCWGG	2 cut(s)	1309, 1837
PspCI	CACGTG	1 cut(s)	674
PspGI	CCWGG	2 cut(s)	1309, 1837
PspN4I	GGNNCC	3 cut(s)	1005, 1722, 1956
PspPI	GGNCC	1 cut(s)	1558
PsuI	RGATCY	2 cut(s)	1597, 1954
RsaI	GTAC	3 cut(s)	863, 998, 1446
RsaNI	GTAC	3 cut(s)	862, 997, 1445
RseI	CAYNNNNRTG	4 cut(s)	651, 1371, 1674, 1731
SaqAI	TTAA	5 cut(s)	578, 1359, 1502, 1536, 1605
SatI	GCNGC	5 cut(s)	546, 888, 1141, 1593, 1698
Sau3AI	GATC	6 cut(s)	192, 724, 1038, 1428, 1597, 1954
Sau96I	GGNCC	1 cut(s)	1558
ScaI	AGTACT	1 cut(s)	1446
SchI	GAGTC	5 cut(s)	787, 823, 1778, 1828, 1991
ScrFI	CCNGG	3 cut(s)	38, 1311, 1839
SduI	GDGCHC	3 cut(s)	98, 306, 763
SfaNI	GCATC	3 cut(s)	574, 1366, 1618
SfuI	TTCGAA	1 cut(s)	1910
SinI	GGWCC	1 cut(s)	1558
SmiMI	CAYNNNNRTG	4 cut(s)	651, 1371, 1674, 1731
SmlI	CTYRAG	5 cut(s)	767, 775, 881, 891, 1712
SmoI	CTYRAG	5 cut(s)	767, 775, 881, 891, 1712
SphI	GCATGC	3 cut(s)	1155, 1370, 1615
SsiI	CCGC	2 cut(s)	545, 685
SspI	AATATT	1 cut(s)	1294
SspMI	CTAG	6 cut(s)	228, 446, 821, 1059, 1104, 1565
StyD4I	CCNGG	3 cut(s)	36, 1309, 1837
StyI	CCWWGG	3 cut(s)	1131, 1462, 2005
TaaI	ACNGT	2 cut(s)	50, 1449
TaiI	ACGT	5 cut(s)	592, 676, 1066, 1230, 1436
TaqI	TCGA	4 cut(s)	413, 600, 1772, 1910
TatI	WGTACW	1 cut(s)	1444
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	7 cut(s)	289, 450, 521, 550, 643, 877, 1189
Tru1I	TTAA	5 cut(s)	578, 1359, 1502, 1536, 1605
Tru9I	TTAA	5 cut(s)	578, 1359, 1502, 1536, 1605
TscAI	CASTG	2 cut(s)	992, 1873
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	4 cut(s)	887, 1140, 1592, 1697
Tsp45I	GTSAC	1 cut(s)	730
TspRI	CASTG	2 cut(s)	992, 1873
Van91I	CCANNNNNTGG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	1558
VspI	ATTAAT	1 cut(s)	1605
XapI	RAATTY	6 cut(s)	110, 472, 634, 791, 1514, 1737
XceI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XmnI	GAANNNNTTC	1 cut(s)	1322
XspI	CTAG	6 cut(s)	228, 446, 821, 1059, 1104, 1565
ZrmI	AGTACT	1 cut(s)	1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.