Prupe.4G244500_v2.0.a1

pentatricopeptide repeat-containing protein At2g22410

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
16219795 .. 16223495
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G244500.4

Sequence Viewer

Length: 2082 bp
ATGCTCATCATCCTCCTCTCTATCTCCATGTCCACCCTCAGAGTCAGACCTCAACGTTTCGTTCCAAAGCCAGTCTCAGACCCTCTCCTTTCTCTATTCCACACCCGCTCTCTCTCACCCCACAAACACAAGCCCATCAATTGGAACACAACCCACAAATCAGTTCAAGCAAACCCACTTCTCTCCCTATTAGAAACATGCAAATCCATGTCCCAGCTGAAGCAGATCCAATCCCAAATGATCCTCACGGGGCTAATCTCAGATGGGTTTGCTTCGAGTCGCCTAATCGCCTTTTGTGCGCTTTCAGAGTCGCGAAATCTTGACTATTGTAACAAGATTTTGTACAATACGCAGAACCCAAATGTGTTTTCTTGGAATGTGGTAATTAGAGGGTATTCGGAGAGCGAGAATCCGAGAGAAGCAGTTGTGTTGTATAAGAAAATGTTGAGAAATGGTGGGTCGAGACCGGATAATTATACTTACCCGTTATTGTTGAAAGTTTGTGCTAATTTAACGTTGAATTTTACGGGTCGCGAGGTTCTTGGGCATGTAATGCGATTGGGTTTATATTCGGATATGTTTGTTCACAATGCTGTGATTCATATGCTTGTTTCATGCAGAGAATTACACGCCGCACGTAAGGTGTTTGATGAAGGTTGTGTGAGAGATTTGGTTTCTTGGAATTCTTTGATTAATGGTTATGTCCGAAGTGGGTTGGCGTGTGAGGCGTTAAGGATTTATCAGGAAATGGAGTTGAAGGGATTTAAGCCGGATGAAGTTACAATGATTGGAGTGGTTTCTTCGTGTGCCCAACTAGAGGATTTGAGACTTGGGAGAAAATTTCATCGGTTGATTGAAGAGAATGGACTAAGTTTGACAGTTCCTCTTGCTAATTCGCTTATGGACATGTATATGAAGTGTGAGAATCTTGAGGCCGCTCAAGCATTATTTGACAACATGTCAAAGAAAACCATTGTCTCATGGACTACAATGATAGTGGGATATGCCAAATATGGGTTTCTGGAAATTGCTCACAGGCTATTGTATGAGATTCCAGAGAAGAATGTTGTGCCATGGAATGCAATGATTGGTGGCTATGTGCAAGCCAAGCATAGCAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCTAGTAATATAAATCCTGATGAAATAACCATGGTTGGCTGCTTATGTGCATGCTCACAACTTGGAGCACTTGATGTTGGGATATGGATTCACCATTATATTGAAAAACAAGGTCTTTCTATAAATGTTGCTGTGGGGACTGCTCTTGTCGACATGTATGCTAAATGTGGGAATATCACAAAGGCTCTCAAGGTCTTCTGGGACATGCCAGGAAGAAACTCTTTCACTTGGACAGCTATTATTTGTGGGTTAGCCCTTAATGGACATGCACATGTTGCCATATCTTACTTTGCGGAAATGATAAATACAGGATTGGTGCCAGATGAGATCACTTTTCTTGGGGTCTTATCAGCTTGTTGTCATGGAGGTTTGGTTGAAGATGGTCGTAAGTACTTTTCCTTAATGACCTCTAAATTCAATATTTGCCCTGAACTTAAACATTACTCTTCCATGGTGGACCTTCTAGGCAGGGCTGGTCTTTTGCAAGAAGCAGAAGAGCTTATCCATAGCATGCCAATCAAGGCAGATGCTGTGGTGTGGGGTGCATTATTCTTTGCTTGTTATATTCATAAAAATGTTTTGATAGGAGAAAGAGCCGCTTCCAAGCTTCTTGAGCTGGACCCTCATGATAGTGGAATTTACGTTTTGCTTGCAAAAATGTATAGGGAATCACATATGTGGGAGGAGGCAGAGAAGGCACAAACTATGATGAAGGAGAGAGGAGTTGAGAAGACTCCTGGTTGTAGCTCAATTGAGGTGAATGGCGCTGTACATGAGTTTATTGTTAGAGACAAATCGCACCCTCAGTCAAAACAGATATATGATTGTTTGGTTGAGTTAACAAGACAAATGGAGCTTGTTGGCAGCATATCAGAAGTTCCTGCATTTTGGGAAAATTCCACCTTGGTGCTGAATTTTAGGCAACAAGTTTGA

Protein Analysis

694

Amino Acids

77.84

Weight (kDa)

7.09

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1465
AccB7I CCANNNNNTGG 1 cut(s) 141
AccBSI CCGCTC 2 cut(s) 108, 938
AccI GTMKAC 1 cut(s) 1299
AccII CGCG 2 cut(s) 313, 534
AciI CCGC 5 cut(s) 106, 633, 936, 1442, 1746
AclI AACGTT 2 cut(s) 55, 515
AclWI GGATC 2 cut(s) 220, 235
AcsI RAATTY 7 cut(s) 520, 682, 839, 1562, 1785, 2044, 2062
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 3 cut(s) 344, 1541, 1920
AfiI CCNNNNNNNGG 3 cut(s) 141, 817, 1014
AflIII ACRYGT 4 cut(s) 906, 957, 1302, 1420
AgsI TTSAA 8 cut(s) 167, 496, 520, 757, 857, 1253, 1526, 1567
AhdI GACNNNNNGTC 1 cut(s) 958
AjnI CCWGG 2 cut(s) 1357, 1885
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AleI CACNNNNGTG 2 cut(s) 1825, 2054
AluBI AGCT 9 cut(s) 217, 1151, 1385, 1502, 1648, 1756, 1765, 1896, 2005
AluI AGCT 9 cut(s) 217, 1151, 1385, 1502, 1648, 1756, 1765, 1896, 2005
Alw21I GWGCWC 1 cut(s) 1219
Alw26I GTCTC 5 cut(s) 79, 457, 820, 982, 1932
AlwI GGATC 2 cut(s) 220, 235
AlwNI CAGNNNCTG 1 cut(s) 1679
AoxI GGCC 1 cut(s) 933
ApeKI GCWGC 2 cut(s) 1188, 2013
ApoI RAATTY 7 cut(s) 520, 682, 839, 1562, 1785, 2044, 2062
AseI ATTAAT 1 cut(s) 693
AspLEI GCGC 2 cut(s) 301, 1916
AspS9I GGNCC 2 cut(s) 1606, 1768
AsuHPI GGTGA 3 cut(s) 108, 1232, 1918
AvaII GGWCC 2 cut(s) 1606, 1768
BaeGI GKGCMC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 1465
BbsI GAAGAC 2 cut(s) 1336, 1886
Bbv12I GWGCWC 1 cut(s) 1219
BbvI GCAGC 2 cut(s) 1175, 2025
BccI CCATC 3 cut(s) 143, 257, 1523
BcgI CGANNNNNNTGC 2 cut(s) 1289, 1323
BciT130I CCWGG 2 cut(s) 1359, 1887
BcoDI GTCTC 5 cut(s) 79, 457, 820, 982, 1932
BfaI CTAG 3 cut(s) 815, 1152, 1613
BfoI RGCGCY 1 cut(s) 1917
BisI GCNGC 5 cut(s) 633, 936, 1189, 1746, 2014
BlsI GCNGC 5 cut(s) 634, 937, 1190, 1747, 2015
BmcAI AGTACT 1 cut(s) 1541
Bme1390I CCNGG 2 cut(s) 1359, 1887
Bme18I GGWCC 2 cut(s) 1606, 1768
BmeRI GACNNNNNGTC 1 cut(s) 958
BmgT120I GGNCC 2 cut(s) 1606, 1768
BmiI GGNNCC 2 cut(s) 1467, 1770
BmrFI CCNGG 2 cut(s) 1359, 1887
BmsI GCATC 1 cut(s) 1666
BpiI GAAGAC 2 cut(s) 1336, 1886
BpuEI CTTGAG 4 cut(s) 924, 950, 1322, 1781
BsaAI YACGTR 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 4 cut(s) 1073, 1179, 1599, 2052
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 1506, 1536
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 817, 1014
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 1089
BseBI CCWGG 2 cut(s) 1359, 1887
BseDI CCNNGG 4 cut(s) 1073, 1179, 1599, 2052
BseGI GGATG 2 cut(s) 9, 778
BseLI CCNNNNNNNGG 3 cut(s) 141, 817, 1014
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 4 cut(s) 52, 90, 273, 1967
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 3 cut(s) 5, 1847, 1884
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 2 cut(s) 1175, 2025
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 313, 534
BshFI GGCC 1 cut(s) 935
BshNI GGYRCC 1 cut(s) 1465
BsiHKAI GWGCWC 1 cut(s) 1219
BsiSI CCGG 2 cut(s) 467, 770
BslFI GGGAC 3 cut(s) 196, 1300, 1364
BslI CCNNNNNNNGG 3 cut(s) 141, 817, 1014
BsmAI GTCTC 5 cut(s) 79, 457, 820, 982, 1932
BsmFI GGGAC 3 cut(s) 196, 1300, 1364
BsmI GAATGC 1 cut(s) 1084
BsnI GGCC 1 cut(s) 935
Bso31I GGTCTC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 811, 1219
Bsp1407I TGTACA 2 cut(s) 342, 1918
Bsp143I GATC 3 cut(s) 225, 240, 1476
Bsp19I CCATGG 3 cut(s) 1073, 1179, 1599
Bsp68I TCGCGA 2 cut(s) 313, 534
BspACI CCGC 5 cut(s) 106, 633, 936, 1442, 1746
BspANI GGCC 1 cut(s) 935
BspCNI CTCAG 4 cut(s) 51, 89, 272, 1966
BspFNI CGCG 2 cut(s) 313, 534
BspHI TCATGA 2 cut(s) 1138, 1774
BspLI GGNNCC 2 cut(s) 1467, 1770
BspPI GGATC 2 cut(s) 220, 235
BspQI GCTCTTC 1 cut(s) 1638
BspT107I GGYRCC 1 cut(s) 1465
BspTNI GGTCTC 1 cut(s) 457
BsrBI CCGCTC 2 cut(s) 108, 938
BsrDI GCAATG 1 cut(s) 1089
BsrGI TGTACA 2 cut(s) 342, 1918
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 1073, 1179, 1599, 2052
BssMI GATC 3 cut(s) 225, 240, 1476
BssT1I CCWWGG 4 cut(s) 1073, 1179, 1599, 2052
Bst2UI CCWGG 2 cut(s) 1359, 1887
Bst4CI ACNGT 1 cut(s) 880
Bst6I CTCTTC 3 cut(s) 852, 1600, 1638
BstAPI GCANNNNNTGC 2 cut(s) 553, 1424
BstAUI TGTACA 2 cut(s) 342, 1918
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 5 cut(s) 1104, 1149, 1201, 1661, 1800
BstDEI CTNAG 5 cut(s) 38, 76, 259, 869, 1953
BstDSI CCRYGG 3 cut(s) 1073, 1179, 1599
BstF5I GGATG 2 cut(s) 9, 778
BstFNI CGCG 2 cut(s) 313, 534
BstH2I RGCGCY 1 cut(s) 1917
BstHHI GCGC 2 cut(s) 301, 1916
BstKTI GATC 3 cut(s) 228, 243, 1479
BstMAI GTCTC 5 cut(s) 79, 457, 820, 982, 1932
BstMBI GATC 3 cut(s) 225, 240, 1476
BstMWI GCNNNNNNNGC 8 cut(s) 296, 553, 725, 941, 1108, 1424, 1762, 1844
BstNI CCWGG 2 cut(s) 1359, 1887
BstSCI CCNGG 2 cut(s) 1357, 1885
BstSLI GKGCMC 1 cut(s) 811
BstUI CGCG 2 cut(s) 313, 534
BstV1I GCAGC 2 cut(s) 1175, 2025
BstV2I GAAGAC 2 cut(s) 1336, 1886
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 935
BtgI CCRYGG 3 cut(s) 1073, 1179, 1599
BtsCI GGATG 2 cut(s) 9, 778
BtuMI TCGCGA 2 cut(s) 313, 534
Cac8I GCNNGC 5 cut(s) 1104, 1149, 1201, 1661, 1800
CaiI CAGNNNCTG 1 cut(s) 1679
CciI TCATGA 2 cut(s) 1138, 1774
CfoI GCGC 2 cut(s) 301, 1916
Cfr13I GGNCC 2 cut(s) 1606, 1768
Csp6I GTAC 3 cut(s) 343, 1540, 1919
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviQI GTAC 3 cut(s) 343, 1540, 1919
DdeI CTNAG 5 cut(s) 38, 76, 259, 869, 1953
DpnI GATC 3 cut(s) 227, 242, 1478
DpnII GATC 3 cut(s) 225, 240, 1476
DriI GACNNNNNGTC 1 cut(s) 958
Eam1104I CTCTTC 3 cut(s) 852, 1600, 1638
Eam1105I GACNNNNNGTC 1 cut(s) 958
EarI CTCTTC 3 cut(s) 852, 1600, 1638
Eco130I CCWWGG 4 cut(s) 1073, 1179, 1599, 2052
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 1606, 1768
Eco57I CTGAAG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 1357, 1885
EcoT14I CCWWGG 4 cut(s) 1073, 1179, 1599, 2052
ErhI CCWWGG 4 cut(s) 1073, 1179, 1599, 2052
FalI AAGNNNNNCTT 4 cut(s) 1354, 1386, 1732, 1764
FaqI GGGAC 3 cut(s) 196, 1300, 1364
FauI CCCGC 1 cut(s) 113
FauNDI CATATG 2 cut(s) 603, 1824
FblI GTMKAC 1 cut(s) 1299
Fnu4HI GCNGC 5 cut(s) 633, 936, 1189, 1746, 2014
FokI GGATG 1 cut(s) 785
Fsp4HI GCNGC 5 cut(s) 633, 936, 1189, 1746, 2014
FspBI CTAG 3 cut(s) 815, 1152, 1613
GlaI GCGC 2 cut(s) 300, 1915
GluI GCNGC 5 cut(s) 633, 936, 1189, 1746, 2014
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 1917
HaeIII GGCC 1 cut(s) 935
HapII CCGG 2 cut(s) 467, 770
HhaI GCGC 2 cut(s) 301, 1916
Hin6I GCGC 2 cut(s) 299, 1914
HinP1I GCGC 2 cut(s) 299, 1914
HincII GTYRAC 2 cut(s) 1300, 1989
HindII GTYRAC 2 cut(s) 1300, 1989
HindIII AAGCTT 1 cut(s) 1754
HpaI GTTAAC 1 cut(s) 1989
HpaII CCGG 2 cut(s) 467, 770
HphI GGTGA 3 cut(s) 108, 1232, 1918
Hpy166II GTNNAC 5 cut(s) 33, 586, 1300, 1606, 1989
Hpy8I GTNNAC 5 cut(s) 33, 586, 1300, 1606, 1989
HpyAV CCTTC 5 cut(s) 647, 751, 1619, 1837, 1855
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4IV ACGT 4 cut(s) 55, 515, 637, 1791
HpyF10VI GCNNNNNNNGC 8 cut(s) 296, 553, 725, 941, 1108, 1424, 1762, 1844
HpyF3I CTNAG 5 cut(s) 38, 76, 259, 869, 1953
HpySE526I ACGT 4 cut(s) 55, 515, 637, 1791
HspAI GCGC 2 cut(s) 299, 1914
KspAI GTTAAC 1 cut(s) 1989
Kzo9I GATC 3 cut(s) 225, 240, 1476
LguI GCTCTTC 1 cut(s) 1638
LmnI GCTCC 2 cut(s) 1214, 2002
Lsp1109I GCAGC 2 cut(s) 1175, 2025
LweI GCATC 1 cut(s) 1666
MaeI CTAG 3 cut(s) 815, 1152, 1613
MaeII ACGT 4 cut(s) 55, 515, 637, 1791
MaeIII GTNAC 2 cut(s) 329, 778
MalI GATC 3 cut(s) 227, 242, 1478
MbiI CCGCTC 2 cut(s) 108, 938
MboI GATC 3 cut(s) 225, 240, 1476
MboII GAAGA 9 cut(s) 792, 869, 1072, 1336, 1374, 1538, 1587, 1655, 1891
MfeI CAATTG 2 cut(s) 139, 1899
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 811, 1219
MlyI GAGTC 4 cut(s) 51, 286, 317, 1876
MseI TTAA 8 cut(s) 512, 693, 731, 765, 1407, 1550, 1584, 1988
MslI CAYNNNNRTG 6 cut(s) 911, 1419, 1722, 1779, 1825, 2054
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 2 cut(s) 467, 770
MspR9I CCNGG 2 cut(s) 1359, 1887
MunI CAATTG 2 cut(s) 139, 1899
Mva1269I GAATGC 1 cut(s) 1084
MvaI CCWGG 2 cut(s) 1359, 1887
MvnI CGCG 2 cut(s) 313, 534
MwoI GCNNNNNNNGC 8 cut(s) 296, 553, 725, 941, 1108, 1424, 1762, 1844
NcoI CCATGG 3 cut(s) 1073, 1179, 1599
NdeI CATATG 2 cut(s) 603, 1824
NdeII GATC 3 cut(s) 225, 240, 1476
NlaIV GGNNCC 2 cut(s) 1467, 1770
NruI TCGCGA 2 cut(s) 313, 534
OliI CACNNNNGTG 2 cut(s) 1825, 2054
PaeI GCATGC 2 cut(s) 1203, 1663
PagI TCATGA 2 cut(s) 1138, 1774
PciI ACATGT 4 cut(s) 906, 957, 1302, 1420
PciSI GCTCTTC 1 cut(s) 1638
PctI GAATGC 1 cut(s) 1084
PfeI GAWTC 6 cut(s) 409, 598, 925, 1051, 1237, 1817
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 5 cut(s) 634, 937, 1190, 1747, 2015
PleI GAGTC 4 cut(s) 50, 285, 316, 1876
PpsI GAGTC 4 cut(s) 50, 285, 316, 1876
Ppu21I YACGTR 1 cut(s) 638
PscI ACATGT 4 cut(s) 906, 957, 1302, 1420
PshBI ATTAAT 1 cut(s) 693
Psp1406I AACGTT 2 cut(s) 55, 515
Psp6I CCWGG 2 cut(s) 1357, 1885
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 1357, 1885
PspN4I GGNNCC 2 cut(s) 1467, 1770
PspPI GGNCC 2 cut(s) 1606, 1768
PstNI CAGNNNCTG 1 cut(s) 1679
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 217
RruI TCGCGA 2 cut(s) 313, 534
RsaI GTAC 3 cut(s) 344, 1541, 1920
RsaNI GTAC 3 cut(s) 343, 1540, 1919
RseI CAYNNNNRTG 6 cut(s) 911, 1419, 1722, 1779, 1825, 2054
SalI GTCGAC 1 cut(s) 1298
SapI GCTCTTC 1 cut(s) 1638
SaqAI TTAA 8 cut(s) 512, 693, 731, 765, 1407, 1550, 1584, 1988
SatI GCNGC 5 cut(s) 633, 936, 1189, 1746, 2014
Sau3AI GATC 3 cut(s) 225, 240, 1476
Sau96I GGNCC 2 cut(s) 1606, 1768
ScaI AGTACT 1 cut(s) 1541
SchI GAGTC 4 cut(s) 51, 286, 317, 1876
ScrFI CCNGG 2 cut(s) 1359, 1887
SduI GDGCHC 2 cut(s) 811, 1219
SfaNI GCATC 1 cut(s) 1666
SinI GGWCC 2 cut(s) 1606, 1768
SmiMI CAYNNNNRTG 6 cut(s) 911, 1419, 1722, 1779, 1825, 2054
SmlI CTYRAG 4 cut(s) 929, 939, 1337, 1760
SmoI CTYRAG 4 cut(s) 929, 939, 1337, 1760
SphI GCATGC 2 cut(s) 1203, 1663
SsiI CCGC 5 cut(s) 106, 633, 936, 1442, 1746
SspI AATATT 1 cut(s) 1570
SspMI CTAG 3 cut(s) 815, 1152, 1613
StyD4I CCNGG 2 cut(s) 1357, 1885
StyI CCWWGG 4 cut(s) 1073, 1179, 1599, 2052
TaaI ACNGT 1 cut(s) 880
TaiI ACGT 4 cut(s) 58, 518, 640, 1794
TaqI TCGA 3 cut(s) 275, 461, 1299
TatI WGTACW 3 cut(s) 342, 1539, 1918
TauI GCSGC 3 cut(s) 635, 938, 1748
TfiI GAWTC 6 cut(s) 409, 598, 925, 1051, 1237, 1817
Tru1I TTAA 8 cut(s) 512, 693, 731, 765, 1407, 1550, 1584, 1988
Tru9I TTAA 8 cut(s) 512, 693, 731, 765, 1407, 1550, 1584, 1988
TseI GCWGC 2 cut(s) 1188, 2013
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 1606, 1768
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 7 cut(s) 520, 682, 839, 1562, 1785, 2044, 2062
XmiI GTMKAC 1 cut(s) 1299
XspI CTAG 3 cut(s) 815, 1152, 1613
ZrmI AGTACT 1 cut(s) 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.