Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014342

Physical Location & Seq

Genomic Coordinates Forward (+)

56390872 .. 56395709

Gene Structure 4838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2799 bp

ATGCTGAGCCTCAGATCTCAACGTTTGGTTCCAAACCCGGTTTCTCACCGTCTCCTTTCTCTCTCATCTCACAGGCACAAGCCCACCAATTGGAACACCACCACCCACAAATTTGTTCAAGAAAACCCACTTCTCTCCCTATTAGAAACCTGCAAATCCATGCCCCAGTTGAAGCAAATCCAAACCCAAATGATCATTACCGGCTTCATCTCAGACGGGTTCGCTTCTAGTCGCCTCATTGCCTTCTGTGCGCTTTCAGAGTGCCGAAATCTCAACTATGCTACCAAGATCCTGCACAATGTGCACGACCCAAATGCCTTCTCTTGGAATGTGGTCATCCGAGGGTTTTCGGAGACCGAAAATCCGAGAGGAGCAGTTGTAATGTATAGGGAAATGTTGAGAAATGGTGGGTCGAGACCGGATAATTATACTTACCCACTACTACTAGGAATCTGCTCTAATTTGTCATTGAATCTGATAGGGCGTGTGGTTCTTGGCCATGTGTTCCAAGTGGGATTTGATTCTGATAGATTTGTTCGCAATGCGGCGATTCATATGCTTGCTTCATGCAGAGAATTAGGGGATGCGCGTAAGGTGTTCGACGAAAGTTCTGTGAGAGACTTGGTGTCTTGGAATTCTCTGATTCATGGTTATGTGCGAAGTGGGTTGGCACTTGAGGCATTGCGGGTTTATGAGGAAATGGAGGTGGAGAGAGTTGAGCCGGATCAAGTGACAATGATTGGGGTGGTTTCTTCGTGTGCCCAGCTTGAGGAGTTGAGTCTTGGGAGGAAATTTCATGGGTTGATACAAGAGAATGGGCTAGGCTTGACTCCTCCTCTTGCCAATGCACTTATGGACATGTACGCCAAGTGTGGGAATCTTGAGGCAGCTCAAGCATTATTTGACAACATGAAACAGAAAACCATCGTCTCATGGACTACAATGATAGTGGGATATGCCAAACATGGGTTTTTGGAGATTGCTCACCGCCTTTTGTACGAGGTGCCAGAGAGTAATGTTGTGCCGTGGAATGCAATGATCGGTGGCTATGTACAAGCTAGACGTAGCAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCTAGGAACATAAGTCCTGATGAAATAACCATGGTTTGCTGCTTATCTGCATGCTCACAACTTGGAGCAGTTGATGTTGGAATATGGATTCACCATTATATTGAAAAACATGATCTTTCTCTCAACGTTGCTTTGGGAACTGCCCTTGTTGACATGTATGGTAAGTGTGGGAACATCACAAAAGCTCTCGATATTTTCTCAGACATGCCAGGAAAGAATTGTTTCACTTGGACATCTATCATTTGTGGTTTAGCCCTTAATGGACATGCACATGATGCTATATCTTACTTTGAAGAGATGATAAATACGGGACTGAAGCCCGATGAGATCACGTTTCTTGGAGTATTATCAGCATGTTGCCATGGAGGTTTGGTTGAAGAAGGCCGAAAGTATTTTTCCTTAATGACCACTAAATTCAATATCTGCCCGAAACTTAAACATTACTCTTGCATGGTGGACCTTCTAGGTAGGGCTGGTCTTTTGCAAGAAGCAGCGGATCTTATCAATAGCATGCCAGTCAAGGCAGATGCCGTGGTGTGGGGTGCATTATTCTTTGCTTGTTATACTCAAAAAAGTGTTTTGATGGGAGCAAGAGCAGCTTCCAAGCTTCTTGAGTTGGACCCCCACGATAGTGGAATTTATGTTTTGCTTGCAAAAATGTATAGGGACTTGAATATGTGGGAGAAGGCAGAGCAGGCAAAGAAGATGATGAAGGAGAGAGGACTGGAGAAGACTCCTGGTTGTAGCTCAATTGAGGTGAATGGCAGTGTGTGCGAGTTCATTGTCAGAGACAAATCACATCCTCATTCGAAACAGATATATGATTGCTTATTTCAGTTAACAAGACAAATGGATCCGGTGGGTGGTATATCTGAAGTTCCTGCACTTTGGGATGACTCTCTCCTTGGTGATGAATTTAGGCGAAAAACTAGCAGTGCAGCAGTACAGCAAGTTAATCTGATTATACTCAATGGTATTGCACAAACTCAATTATGGTGTGAATTTATGTTTATGGGAACTCTCTTACACTTGTATTTTCAGGTTATACTTTCAAATGCGACTTCAATGCAATTGGAGCTGCAATTTGATATTCCATTTGGTGTGTCCCTAAAGATCTTGGACCCCATATATCCAGGTCAAGAGTTACCGCCGCCTCTACACTTGGCTGAAGCTGTGAATAACTACCTTCCTGACGCATTGGCATTGACGATGATAGAAAGCAGTGGGATTACTCAGACTGCATTTCTTTCAGAGGTGGGAACTTCTTTTCATAATGTTGATCCTTCTCATCAGCTGACATTGGAGATCCATATGCATGGCTTTAAACCAGCAGTTTTGGATTTCCCACATACTGAAATATTCTGTAAAGTGGCCAAGTTTGGTGGAGAGAAGTTCTCACTTTCTGAAGTTGTGGCCTTCGACTCCACAAATGGTTGTTTTTGTAGTCTTGAATCTTTCCTTAGAAGTAAGCTTCGTAGAATTAGTGATGGGATTGGTGTCTTTTTTTTAGGACCAATGTATGTCACAGTGGAAAAGCCTTTCTCATCATGTCCACAGCCACAGCCACCTATCAATCAGAGGCGTTTTGCATATGGTAATTATTCTAATGCAACTGCCTCACCTTTGCTTCTCCAAGCCCCACAAGAGAAAAGGGTTTTGCCGGCTTCTGCTGCTGCTCCAATCAAGTGTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 DYW_deaminase PPR PPR_2

Protein Analysis

933

Amino Acids

103.64

Weight (kDa)

6.45

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	1.3e-07	PPR repeat family
PPR_2	PF13041	207 - 254	7.7e-10	PPR repeat family
PPR	PF01535	209 - 237	1.2e-07	PPR repeat
PPR_2	PF13041	339 - 386	7e-12	PPR repeat family
PPR	PF01535	342 - 371	3.8e-07	PPR repeat
PPR_2	PF13041	440 - 488	1.7e-09	PPR repeat family
E_motif	PF20431	562 - 619	2.4e-14	E motif
Eplus_motif	PF20430	625 - 651	6.9e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22410
fragaria_vesca	FvH4_3g29070
malus_domestica	MD03G1178400.v1.1
prunus_persica	Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0051471
rosa_laevigata	RLG00000034874
rosa_multiflora	Rmu_sc0023383.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027080
rosa_rugosa	Rorug05G0279100
rosa_samantha	Rh5CG387100
rosa_wichuraiana	Rw5G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	1003
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccII	CGCG	1 cut(s)	589
AciI	CCGC	6 cut(s)	545, 685, 988, 1595, 2249, 2252
AclI	AACGTT	2 cut(s)	22, 1227
AclWI	GGATC	7 cut(s)	283, 732, 1605, 1949, 1962, 2375, 2401
AcoI	YGGCCR	2 cut(s)	496, 2472
AcsI	RAATTY	7 cut(s)	110, 634, 791, 1514, 1737, 2015, 2102
AcuI	CTGAAG	4 cut(s)	1436, 1995, 2289, 2526
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	4 cut(s)	863, 998, 1053, 2046
AfiI	CCNNNNNNNGG	7 cut(s)	90, 324, 769, 873, 966, 1638, 1964
AflIII	ACRYGT	2 cut(s)	858, 1254
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	3 cut(s)	1309, 1837, 2233
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	1731
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	6 cut(s)	56, 347, 409, 612, 934, 1884
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	7 cut(s)	283, 732, 1605, 1949, 1962, 2375, 2401
AoxI	GGCC	4 cut(s)	496, 1483, 2472, 2514
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	8 cut(s)	887, 1140, 1592, 1697, 2039, 2179, 2771, 2774
ApoI	RAATTY	7 cut(s)	110, 634, 791, 1514, 1737, 2015, 2102
Asp700I	GAANNNNTTC	1 cut(s)	1322
AspLEI	GCGC	2 cut(s)	253, 589
AspS9I	GGNCC	4 cut(s)	1558, 1720, 2221, 2612
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	6 cut(s)	38, 977, 1184, 1870, 2021, 2712
AsuII	TTCGAA	1 cut(s)	1910
AvaII	GGWCC	4 cut(s)	1558, 1720, 2221, 2612
BaeGI	GKGCMC	2 cut(s)	306, 763
BalI	TGGCCA	2 cut(s)	498, 2474
BamHI	GGATCC	1 cut(s)	1954
BanI	GGYRCC	1 cut(s)	1003
BbsI	GAAGAC	1 cut(s)	1838
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	8 cut(s)	899, 1127, 1604, 1709, 2051, 2166, 2758, 2761
BccI	CCATC	3 cut(s)	932, 1678, 2582
BceAI	ACGGC	2 cut(s)	1009, 1616
BcgI	CGANNNNNNTGC	6 cut(s)	296, 330, 538, 572, 2149, 2183
BciT130I	CCWGG	3 cut(s)	1311, 1839, 2235
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	6 cut(s)	56, 347, 409, 612, 934, 1884
BfaI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2031
BfuAI	ACCTGC	1 cut(s)	158
BglII	AGATCT	2 cut(s)	14, 2214
BlpI	GCTNAGC	1 cut(s)	5
Bme1390I	CCNGG	4 cut(s)	38, 1311, 1839, 2235
Bme18I	GGWCC	4 cut(s)	1558, 1720, 2221, 2612
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmgT120I	GGNCC	4 cut(s)	1558, 1720, 2221, 2612
BmiI	GGNNCC	5 cut(s)	30, 1005, 1722, 1956, 2223
BmrFI	CCNGG	4 cut(s)	38, 1311, 1839, 2235
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	574, 1366, 1618
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	1838
BplI	GAGNNNNNCTC	2 cut(s)	2480, 2512
BpmI	CTGGAG	1 cut(s)	1847
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	1910
BpuEI	CTTGAG	5 cut(s)	695, 788, 876, 902, 1733
BpuMI	CCSGG	1 cut(s)	38
BsaI	GGTCTC	2 cut(s)	347, 409
BsaJI	CCNNGG	6 cut(s)	340, 1025, 1131, 1462, 1632, 2005
BsaWI	WCCGGW	2 cut(s)	418, 1957
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 1458, 1488
Bsc4I	CCNNNNNNNGG	7 cut(s)	90, 324, 769, 873, 966, 1638, 1964
Bse118I	RCCGGY	2 cut(s)	200, 2761
Bse1I	ACTGG	3 cut(s)	166, 1616, 1830
Bse3DI	GCAATG	4 cut(s)	237, 547, 680, 1041
BseBI	CCWGG	3 cut(s)	1311, 1839, 2235
BseDI	CCNNGG	6 cut(s)	340, 1025, 1131, 1462, 1632, 2005
BseGI	GGATG	4 cut(s)	336, 589, 1900, 1999
BseLI	CCNNNNNNNGG	7 cut(s)	90, 324, 769, 873, 966, 1638, 1964
BseMI	GCAATG	4 cut(s)	237, 547, 680, 1041
BseMII	CTCAG	4 cut(s)	25, 225, 1314, 2348
BseNI	ACTGG	3 cut(s)	166, 1616, 1830
BseRI	GAGGAG	4 cut(s)	384, 785, 822, 825
BseSI	GKGCMC	2 cut(s)	306, 763
BseXI	GCAGC	8 cut(s)	899, 1127, 1604, 1709, 2051, 2166, 2758, 2761
BseYI	CCCAGC	1 cut(s)	762
BsgI	GTGCAG	3 cut(s)	278, 1968, 2058
Bsh1236I	CGCG	1 cut(s)	589
BshFI	GGCC	4 cut(s)	498, 1485, 2474, 2516
BshNI	GGYRCC	1 cut(s)	1003
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	6 cut(s)	38, 201, 419, 722, 1958, 2762
BslFI	GGGAC	3 cut(s)	1425, 1781, 2191
BslI	CCNNNNNNNGG	7 cut(s)	90, 324, 769, 873, 966, 1638, 1964
BsmAI	GTCTC	6 cut(s)	56, 347, 409, 612, 934, 1884
BsmBI	CGTCTC	2 cut(s)	56, 934
BsmFI	GGGAC	3 cut(s)	1425, 1781, 2191
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	4 cut(s)	498, 1485, 2474, 2516
Bso31I	GGTCTC	2 cut(s)	347, 409
Bsp119I	TTCGAA	1 cut(s)	1910
Bsp1286I	GDGCHC	2 cut(s)	306, 763
Bsp1407I	TGTACA	1 cut(s)	1051
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	2 cut(s)	1131, 1462
BspACI	CCGC	6 cut(s)	545, 685, 988, 1595, 2249, 2252
BspANI	GGCC	4 cut(s)	498, 1485, 2474, 2516
BspCNI	CTCAG	4 cut(s)	24, 224, 1313, 2347
BspFNI	CGCG	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	5 cut(s)	30, 1005, 1722, 1956, 2223
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	7 cut(s)	283, 732, 1605, 1949, 1962, 2375, 2401
BspT104I	TTCGAA	1 cut(s)	1910
BspT107I	GGYRCC	1 cut(s)	1003
BspTNI	GGTCTC	2 cut(s)	347, 409
BsrDI	GCAATG	4 cut(s)	237, 547, 680, 1041
BsrFI	RCCGGY	2 cut(s)	200, 2761
BsrGI	TGTACA	1 cut(s)	1051
BsrI	ACTGG	3 cut(s)	166, 1616, 1830
BssAI	RCCGGY	2 cut(s)	200, 2761
BssECI	CCNNGG	6 cut(s)	340, 1025, 1131, 1462, 1632, 2005
BssT1I	CCWWGG	3 cut(s)	1131, 1462, 2005
Bst2UI	CCWGG	3 cut(s)	1311, 1839, 2235
Bst4CI	ACNGT	2 cut(s)	50, 2629
Bst6I	CTCTTC	1 cut(s)	1389
BstAPI	GCANNNNNTGC	3 cut(s)	301, 1376, 1872
BstAUI	TGTACA	1 cut(s)	1051
BstBI	TTCGAA	1 cut(s)	1910
BstC8I	GCNNGC	7 cut(s)	561, 1101, 1153, 1613, 1752, 1797, 2763
BstDEI	CTNAG	6 cut(s)	5, 11, 211, 1300, 2334, 2561
BstDSI	CCRYGG	4 cut(s)	1025, 1131, 1462, 1632
BstF5I	GGATG	4 cut(s)	336, 589, 1900, 1999
BstFNI	CGCG	1 cut(s)	589
BstHHI	GCGC	2 cut(s)	253, 589
BstMAI	GTCTC	6 cut(s)	56, 347, 409, 612, 934, 1884
BstNI	CCWGG	3 cut(s)	1311, 1839, 2235
BstNSI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
BstSCI	CCNGG	4 cut(s)	36, 1309, 1837, 2233
BstSLI	GKGCMC	2 cut(s)	306, 763
BstUI	CGCG	1 cut(s)	589
BstV1I	GCAGC	8 cut(s)	899, 1127, 1604, 1709, 2051, 2166, 2758, 2761
BstV2I	GAAGAC	1 cut(s)	1838
BstX2I	RGATCY	6 cut(s)	14, 288, 1597, 1954, 2214, 2406
BstXI	CCANNNNNNTGG	2 cut(s)	1733, 2417
BstYI	RGATCY	6 cut(s)	14, 288, 1597, 1954, 2214, 2406
BsuRI	GGCC	4 cut(s)	498, 1485, 2474, 2516
BtgI	CCRYGG	4 cut(s)	1025, 1131, 1462, 1632
BtsCI	GGATG	4 cut(s)	336, 589, 1900, 1999
BtsI	GCAGTG	3 cut(s)	1873, 2041, 2329
BtsIMutI	CAGTG	4 cut(s)	1873, 2041, 2329, 2634
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	7 cut(s)	561, 1101, 1153, 1613, 1752, 1797, 2763
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	2 cut(s)	253, 589
Cfr10I	RCCGGY	2 cut(s)	200, 2761
Cfr13I	GGNCC	4 cut(s)	1558, 1720, 2221, 2612
CseI	GACGC	1 cut(s)	2303
Csp6I	GTAC	4 cut(s)	862, 997, 1052, 2045
CspCI	CAANNNNNGTGG	4 cut(s)	930, 965, 2464, 2499
CviQI	GTAC	4 cut(s)	862, 997, 1052, 2045
DdeI	CTNAG	6 cut(s)	5, 11, 211, 1300, 2334, 2561
DraI	TTTAAA	1 cut(s)	2425
DraIII	CACNNNGTG	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	2 cut(s)	496, 2472
Eam1104I	CTCTTC	1 cut(s)	1389
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	1389
Eco130I	CCWWGG	3 cut(s)	1131, 1462, 2005
Eco31I	GGTCTC	2 cut(s)	347, 409
Eco47I	GGWCC	4 cut(s)	1558, 1720, 2221, 2612
Eco57I	CTGAAG	4 cut(s)	1436, 1995, 2289, 2526
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	3 cut(s)	1309, 1837, 2233
EcoT14I	CCWWGG	3 cut(s)	1131, 1462, 2005
EcoT22I	ATGCAT	1 cut(s)	2418
ErhI	CCWWGG	3 cut(s)	1131, 1462, 2005
Esp3I	CGTCTC	2 cut(s)	56, 934
FalI	AAGNNNNNCTT	2 cut(s)	1684, 1716
FaqI	GGGAC	3 cut(s)	1425, 1781, 2191
FauI	CCCGC	1 cut(s)	678
FauNDI	CATATG	3 cut(s)	555, 2412, 2692
FbaI	TGATCA	1 cut(s)	192
FokI	GGATG	4 cut(s)	323, 596, 1887, 2006
FspBI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2031
GlaI	GCGC	2 cut(s)	252, 588
GsaI	CCCAGC	1 cut(s)	766
GsuI	CTGGAG	1 cut(s)	1847
HaeIII	GGCC	4 cut(s)	498, 1485, 2474, 2516
HapII	CCGG	6 cut(s)	38, 201, 419, 722, 1958, 2762
HgaI	GACGC	1 cut(s)	2303
HhaI	GCGC	2 cut(s)	253, 589
Hin6I	GCGC	2 cut(s)	251, 587
HinP1I	GCGC	2 cut(s)	251, 587
HincII	GTYRAC	2 cut(s)	1252, 1941
HindII	GTYRAC	2 cut(s)	1252, 1941
HindIII	AAGCTT	2 cut(s)	1706, 2570
HpaI	GTTAAC	1 cut(s)	1941
HpaII	CCGG	6 cut(s)	38, 201, 419, 722, 1958, 2762
HphI	GGTGA	6 cut(s)	38, 977, 1184, 1870, 2021, 2712
Hpy166II	GTNNAC	5 cut(s)	304, 1252, 1558, 1941, 2654
Hpy8I	GTNNAC	5 cut(s)	304, 1252, 1558, 1941, 2654
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	9 cut(s)	253, 328, 1475, 1571, 1780, 1807, 2297, 2394, 2527
HpyCH4III	ACNGT	2 cut(s)	50, 2629
HpyCH4IV	ACGT	4 cut(s)	22, 1063, 1227, 1433
HpyF3I	CTNAG	6 cut(s)	5, 11, 211, 1300, 2334, 2561
HpySE526I	ACGT	4 cut(s)	22, 1063, 1227, 1433
HspAI	GCGC	2 cut(s)	251, 587
KroI	GCCGGC	1 cut(s)	2761
KroNI	GCCGGC	1 cut(s)	2763
Ksp22I	TGATCA	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	1941
LmnI	GCTCC	5 cut(s)	371, 1166, 1688, 2176, 2782
Lsp1109I	GCAGC	8 cut(s)	899, 1127, 1604, 1709, 2051, 2166, 2758, 2761
LweI	GCATC	3 cut(s)	574, 1366, 1618
MaeI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2031
MaeII	ACGT	4 cut(s)	22, 1063, 1227, 1433
MaeIII	GTNAC	3 cut(s)	730, 2244, 2623
MboII	GAAGA	5 cut(s)	744, 1406, 1490, 1816, 1843
MfeI	CAATTG	3 cut(s)	88, 1851, 2171
MflI	RGATCY	6 cut(s)	14, 288, 1597, 1954, 2214, 2406
MhlI	GDGCHC	2 cut(s)	306, 763
MlsI	TGGCCA	2 cut(s)	498, 2474
MluNI	TGGCCA	2 cut(s)	498, 2474
MlyI	GAGTC	5 cut(s)	787, 823, 1828, 1991, 2516
MmeI	TCCRAC	2 cut(s)	1159, 1698
Mox20I	TGGCCA	2 cut(s)	498, 2474
Mph1103I	ATGCAT	1 cut(s)	2418
MroNI	GCCGGC	1 cut(s)	2761
MroXI	GAANNNNTTC	1 cut(s)	1322
MscI	TGGCCA	2 cut(s)	498, 2474
MseI	TTAA	6 cut(s)	1359, 1502, 1536, 1940, 2055, 2424
MslI	CAYNNNNRTG	4 cut(s)	651, 1371, 1731, 2415
Msp20I	TGGCCA	2 cut(s)	498, 2474
MspA1I	CMGCKG	2 cut(s)	1595, 2395
MspI	CCGG	6 cut(s)	38, 201, 419, 722, 1958, 2762
MspR9I	CCNGG	4 cut(s)	38, 1311, 1839, 2235
MunI	CAATTG	3 cut(s)	88, 1851, 2171
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	3 cut(s)	1311, 1839, 2235
MvnI	CGCG	1 cut(s)	589
NaeI	GCCGGC	1 cut(s)	2763
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	2 cut(s)	1131, 1462
NdeI	CATATG	3 cut(s)	555, 2412, 2692
NgoMIV	GCCGGC	1 cut(s)	2761
NlaIV	GGNNCC	5 cut(s)	30, 1005, 1722, 1956, 2223
NmuCI	GTSAC	2 cut(s)	730, 2623
NsiI	ATGCAT	1 cut(s)	2418
NspI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
NspV	TTCGAA	1 cut(s)	1910
OliI	CACNNNNGTG	1 cut(s)	1731
PaeI	GCATGC	2 cut(s)	1155, 1615
PagI	TCATGA	1 cut(s)	1090
PciI	ACATGT	2 cut(s)	858, 1254
PctI	GAATGC	1 cut(s)	1036
PdiI	GCCGGC	1 cut(s)	2763
PdmI	GAANNNNTTC	1 cut(s)	1322
PfeI	GAWTC	8 cut(s)	450, 472, 521, 550, 643, 877, 1189, 2552
PflMI	CCANNNNNTGG	1 cut(s)	90
PleI	GAGTC	5 cut(s)	786, 823, 1828, 1991, 2516
PpsI	GAGTC	5 cut(s)	786, 823, 1828, 1991, 2516
PscI	ACATGT	2 cut(s)	858, 1254
Psp1406I	AACGTT	2 cut(s)	22, 1227
Psp6I	CCWGG	3 cut(s)	1309, 1837, 2233
PspFI	CCCAGC	1 cut(s)	762
PspGI	CCWGG	3 cut(s)	1309, 1837, 2233
PspN4I	GGNNCC	5 cut(s)	30, 1005, 1722, 1956, 2223
PspPI	GGNCC	4 cut(s)	1558, 1720, 2221, 2612
PsuI	RGATCY	6 cut(s)	14, 288, 1597, 1954, 2214, 2406
PvuII	CAGCTG	1 cut(s)	2395
RsaI	GTAC	4 cut(s)	863, 998, 1053, 2046
RsaNI	GTAC	4 cut(s)	862, 997, 1052, 2045
RseI	CAYNNNNRTG	4 cut(s)	651, 1371, 1731, 2415
SaqAI	TTAA	6 cut(s)	1359, 1502, 1536, 1940, 2055, 2424
Sau96I	GGNCC	4 cut(s)	1558, 1720, 2221, 2612
SchI	GAGTC	5 cut(s)	787, 823, 1828, 1991, 2516
ScrFI	CCNGG	4 cut(s)	38, 1311, 1839, 2235
SduI	GDGCHC	2 cut(s)	306, 763
SfaNI	GCATC	3 cut(s)	574, 1366, 1618
SfuI	TTCGAA	1 cut(s)	1910
SinI	GGWCC	4 cut(s)	1558, 1720, 2221, 2612
SmiMI	CAYNNNNRTG	4 cut(s)	651, 1371, 1731, 2415
SmlI	CTYRAG	5 cut(s)	674, 767, 881, 891, 1712
SmoI	CTYRAG	5 cut(s)	674, 767, 881, 891, 1712
SphI	GCATGC	2 cut(s)	1155, 1615
SsiI	CCGC	6 cut(s)	545, 685, 988, 1595, 2249, 2252
SspI	AATATT	1 cut(s)	2460
SspMI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2031
StyD4I	CCNGG	4 cut(s)	36, 1309, 1837, 2233
StyI	CCWWGG	3 cut(s)	1131, 1462, 2005
TaaI	ACNGT	2 cut(s)	50, 2629
TaiI	ACGT	4 cut(s)	25, 1066, 1230, 1436
TaqI	TCGA	5 cut(s)	413, 600, 1290, 1910, 2520
TaqII	GACCGA	1 cut(s)	371
TatI	WGTACW	2 cut(s)	1051, 2044
TauI	GCSGC	2 cut(s)	548, 2254
TfiI	GAWTC	8 cut(s)	450, 472, 521, 550, 643, 877, 1189, 2552
Tru1I	TTAA	6 cut(s)	1359, 1502, 1536, 1940, 2055, 2424
Tru9I	TTAA	6 cut(s)	1359, 1502, 1536, 1940, 2055, 2424
TscAI	CASTG	4 cut(s)	1873, 2041, 2329, 2634
TseFI	GTSAC	2 cut(s)	730, 2623
TseI	GCWGC	8 cut(s)	887, 1140, 1592, 1697, 2039, 2179, 2771, 2774
Tsp45I	GTSAC	2 cut(s)	730, 2623
TspRI	CASTG	4 cut(s)	1873, 2041, 2329, 2634
Van91I	CCANNNNNTGG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	4 cut(s)	1558, 1720, 2221, 2612
XapI	RAATTY	7 cut(s)	110, 634, 791, 1514, 1737, 2015, 2102
XceI	RCATGY	7 cut(s)	862, 1155, 1258, 1309, 1370, 1458, 1615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XmnI	GAANNNNTTC	1 cut(s)	1322
XspI	CTAG	7 cut(s)	228, 446, 821, 1059, 1104, 1565, 2031
Zsp2I	ATGCAT	1 cut(s)	2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.