Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014342

Physical Location & Seq

Genomic Coordinates Reverse (-)

31712119 .. 31713752

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCTCCCGAACGATGCCGTCTCCCCTGACACCTCTATGTCCGCTGCCCCCTTCAATCAACATACACCTCCGTGTTCTAAGAATCCCTCAAGCAATTCCTCACCCAAAACCCTCCCGACTGCATCGTTATCGAGATCTTCCACCAATGTCAGCCATTTTGGGCCACACGAGAAACTGGGCTCCGATTTGGAGCCTTTTGTGGTGCCGGGTCTGCCTAATTGGGTCGAATTGACGAAATCCCAGCTGCCCATGTTCGCCAGAAACAAAGGTGGGCCTGATAAGTTTGGGCAATTGGAGGATAAGAGCTTTGGGGTTGTGGTGAATAGCTTCTATGAATTGGAGTCAAAATATGTTGACTATTTCAAGAATGAATTGGGGAAGAAGGCGTGGGGGATCGGCCCGGTTTCACTATGCAACAGAGATGAAGCTGATAAATCTGAGAGAGGCAAAGCTACTTCGGTTGATGAGGATAATCTGAAATGGTGTTTGAATTGGTTGGATTCTCAAGAACCTAACTCAGTTATGAACATTAGTTTTGGAAGCTTAGCTCGATTGTCTTATAAACAACTTCTCGAAATCGCTCATGGGCTTGATGATTCTAAGCAGGCTTTTGTCTGGGTTATTGGGAAAGTGTTTACATATGAGAATAAAGATCATGAAGATGAGGAAAATTGGCTTGTGGGTTTTGAGAAGAGAATGAGGGAGAGTCCAAGAGGGGTTGTGATAAGGGGATGGGCTCCTCAGATTTTGATGTTGGAGCATAAGTCTGTAGGATGGTTTGGTTTGAATCTTTCTGCCTGTTTGGCGGCGCTCGAGGTCGGTGGGGGTATCCTCGCCGCTGATGGGCCTCTACCGGACGGGTGTTTGAAGGCTAATTGCTCAGAAAGTTCTGACAGAGGGGTGTTGACCCAAGGTCTGGCTAAATGGTTTAATTTGACGTTGAGTACAGGACAAAGTTGCGCTTCATCTAGTATGGAGGGGCTGGATGGTGGTGCGAGGTGCTGGATCGGGCATCATGGGAGGCTTGCTTCGATGTGGGATGGCTTGGACACAACATGGACGTGGCGGCGCGGCTTGCAACTTAAACGTGGCGGCGCGGTTGCAGCGGGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 DYW_deaminase PPR PPR_2

Protein Analysis

371

Amino Acids

40.54

Weight (kDa)

5.95

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22410
fragaria_vesca	FvH4_3g29070
malus_domestica	MD03G1178400.v1.1
prunus_persica	Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1 Prupe.4G244500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0051471
rosa_laevigata	RLG00000034874
rosa_multiflora	Rmu_sc0023383.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027080
rosa_rugosa	Rorug05G0279100
rosa_samantha	Rh5CG387100
rosa_wichuraiana	Rw5G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	916
AccII	CGCG	2 cut(s)	1071, 1097
AciI	CCGC	8 cut(s)	42, 806, 837, 1066, 1071, 1092, 1097, 1106
AclWI	GGATC	2 cut(s)	401, 1013
AfaI	GTAC	1 cut(s)	946
AfiI	CCNNNNNNNGG	2 cut(s)	843, 916
AgsI	TTSAA	5 cut(s)	55, 364, 490, 787, 868
AhdI	GACNNNNNGTC	1 cut(s)	912
AjiI	CACGTC	1 cut(s)	1062
AleI	CACNNNNGTG	1 cut(s)	70
AluBI	AGCT	7 cut(s)	244, 306, 327, 428, 452, 543, 548
AluI	AGCT	7 cut(s)	244, 306, 327, 428, 452, 543, 548
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	401, 1013
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	4 cut(s)	161, 272, 397, 845
ApeKI	GCWGC	3 cut(s)	44, 244, 1103
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	4 cut(s)	811, 962, 1071, 1097
AspS9I	GGNCC	4 cut(s)	161, 272, 398, 845
AsuC2I	CCSGG	2 cut(s)	207, 401
AsuHPI	GGTGA	2 cut(s)	93, 331
AvaI	CYCGRG	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	182, 739
BauI	CACGAG	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	31, 231
BccI	CCATC	5 cut(s)	726, 768, 836, 980, 1034
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciVI	GTATCC	1 cut(s)	839
BcnI	CCSGG	2 cut(s)	207, 401
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	969
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	839
BglI	GCCNNNNNGGC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	8 cut(s)	45, 245, 807, 837, 1067, 1072, 1093, 1104
BlpI	GCTNAGC	1 cut(s)	544
BlsI	GCNGC	8 cut(s)	46, 246, 808, 838, 1068, 1073, 1094, 1105
Bme1390I	CCNGG	2 cut(s)	207, 401
BmeRI	GACNNNNNGTC	1 cut(s)	912
BmeT110I	CYCGRG	1 cut(s)	812
BmgBI	CACGTC	1 cut(s)	1062
BmgT120I	GGNCC	4 cut(s)	161, 272, 398, 845
BmiI	GGNNCC	4 cut(s)	181, 192, 204, 738
BmrFI	CCNGG	2 cut(s)	207, 401
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	4, 131, 1021
BmuI	ACTGGG	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	73, 489
BpuMI	CCSGG	2 cut(s)	207, 401
BsaJI	CCNNGG	1 cut(s)	910
BsaWI	WCCGGW	1 cut(s)	853
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	843, 916
Bse1I	ACTGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	910
BseGI	GGATG	4 cut(s)	737, 779, 991, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	843, 916
BseMII	CTCAG	4 cut(s)	429, 531, 755, 894
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	2 cut(s)	31, 231
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	1071, 1097
BshFI	GGCC	4 cut(s)	163, 274, 399, 847
BshNI	GGYRCC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	3 cut(s)	206, 401, 854
BslI	CCNNNNNNNGG	2 cut(s)	843, 916
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	163, 274, 399, 847
BsoBI	CYCGRG	1 cut(s)	812
Bsp1286I	GDGCHC	2 cut(s)	182, 739
Bsp143I	GATC	4 cut(s)	134, 393, 652, 1005
Bsp1720I	GCTNAGC	1 cut(s)	544
BspACI	CCGC	8 cut(s)	42, 806, 837, 1066, 1071, 1092, 1097, 1106
BspANI	GGCC	4 cut(s)	163, 274, 399, 847
BspCNI	CTCAG	4 cut(s)	430, 530, 754, 893
BspFNI	CGCG	2 cut(s)	1071, 1097
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	4 cut(s)	181, 192, 204, 738
BspPI	GGATC	2 cut(s)	401, 1013
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	910
BssMI	GATC	4 cut(s)	134, 393, 652, 1005
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	910
Bst2BI	CACGAG	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	606, 1026, 1076
BstDEI	CTNAG	7 cut(s)	78, 438, 517, 544, 600, 741, 880
BstF5I	GGATG	4 cut(s)	737, 779, 991, 1045
BstFNI	CGCG	2 cut(s)	1071, 1097
BstH2I	RGCGCY	1 cut(s)	812
BstHHI	GCGC	4 cut(s)	811, 962, 1071, 1097
BstKTI	GATC	4 cut(s)	137, 396, 655, 1008
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	134, 393, 652, 1005
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 803, 1075, 1103
BstSCI	CCNGG	2 cut(s)	205, 399
BstSFI	CTRYAG	1 cut(s)	768
BstUI	CGCG	2 cut(s)	1071, 1097
BstV1I	GCAGC	2 cut(s)	31, 231
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	163, 274, 399, 847
BtrI	CACGTC	1 cut(s)	1062
BtsCI	GGATG	4 cut(s)	737, 779, 991, 1045
Cac8I	GCNNGC	3 cut(s)	606, 1026, 1076
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	4 cut(s)	811, 962, 1071, 1097
Cfr13I	GGNCC	4 cut(s)	161, 272, 398, 845
Csp6I	GTAC	1 cut(s)	945
CviAII	CATG	5 cut(s)	250, 584, 656, 1016, 1056
CviQI	GTAC	1 cut(s)	945
DdeI	CTNAG	7 cut(s)	78, 438, 517, 544, 600, 741, 880
DpnI	GATC	4 cut(s)	136, 395, 654, 1007
DpnII	GATC	4 cut(s)	134, 393, 652, 1005
DriI	GACNNNNNGTC	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	686
Eam1105I	GACNNNNNGTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	910
Eco24I	GRGCYC	2 cut(s)	182, 739
Eco88I	CYCGRG	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	910
EcoT38I	GRGCYC	2 cut(s)	182, 739
ErhI	CCWWGG	1 cut(s)	910
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	5 cut(s)	253, 587, 659, 1019, 1059
FalI	AAGNNNNNCTT	2 cut(s)	946, 978
FatI	CATG	5 cut(s)	249, 583, 655, 1015, 1055
FauI	CCCGC	1 cut(s)	1099
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	8 cut(s)	45, 245, 807, 837, 1067, 1072, 1093, 1104
FokI	GGATG	4 cut(s)	744, 786, 998, 1052
FriOI	GRGCYC	2 cut(s)	182, 739
Fsp4HI	GCNGC	8 cut(s)	45, 245, 807, 837, 1067, 1072, 1093, 1104
FspBI	CTAG	1 cut(s)	969
GlaI	GCGC	4 cut(s)	810, 961, 1070, 1096
GluI	GCNGC	8 cut(s)	45, 245, 807, 837, 1067, 1072, 1093, 1104
GsaI	CCCAGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	812
HaeIII	GGCC	4 cut(s)	163, 274, 399, 847
HapII	CCGG	3 cut(s)	206, 401, 854
HhaI	GCGC	4 cut(s)	811, 962, 1071, 1097
Hin1II	CATG	5 cut(s)	253, 587, 659, 1019, 1059
Hin6I	GCGC	4 cut(s)	809, 960, 1069, 1095
HinP1I	GCGC	4 cut(s)	809, 960, 1069, 1095
HincII	GTYRAC	2 cut(s)	355, 906
HindII	GTYRAC	2 cut(s)	355, 906
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	6 cut(s)	82, 341, 500, 596, 706, 787
HpaII	CCGG	3 cut(s)	206, 401, 854
HphI	GGTGA	2 cut(s)	93, 331
Hpy166II	GTNNAC	3 cut(s)	355, 636, 906
Hpy188I	TCNGA	6 cut(s)	184, 439, 477, 744, 883, 892
Hpy188III	TCNNGA	7 cut(s)	7, 115, 132, 364, 506, 572, 656
Hpy8I	GTNNAC	3 cut(s)	355, 636, 906
HpyAV	CCTTC	3 cut(s)	61, 376, 862
HpyCH4IV	ACGT	3 cut(s)	938, 1061, 1087
HpyCH4V	TGCA	4 cut(s)	122, 414, 1078, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 803, 1075, 1103
HpyF3I	CTNAG	7 cut(s)	78, 438, 517, 544, 600, 741, 880
HpySE526I	ACGT	3 cut(s)	938, 1061, 1087
Hsp92II	CATG	5 cut(s)	253, 587, 659, 1019, 1059
HspAI	GCGC	4 cut(s)	809, 960, 1069, 1095
Kzo9I	GATC	4 cut(s)	134, 393, 652, 1005
LmnI	GCTCC	5 cut(s)	9, 185, 190, 742, 757
Lsp1109I	GCAGC	2 cut(s)	31, 231
LweI	GCATC	3 cut(s)	4, 131, 1021
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	3 cut(s)	938, 1061, 1087
MalI	GATC	4 cut(s)	136, 395, 654, 1007
MboI	GATC	4 cut(s)	134, 393, 652, 1005
MboII	GAAGA	4 cut(s)	129, 391, 671, 703
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	182, 739
MlyI	GAGTC	2 cut(s)	350, 715
MmeI	TCCRAC	2 cut(s)	477, 735
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	930, 1083
MslI	CAYNNNNRTG	4 cut(s)	35, 70, 660, 1060
MspA1I	CMGCKG	4 cut(s)	44, 244, 839, 1106
MspI	CCGG	3 cut(s)	206, 401, 854
MspR9I	CCNGG	2 cut(s)	207, 401
MunI	CAATTG	1 cut(s)	290
MvnI	CGCG	2 cut(s)	1071, 1097
MwoI	GCNNNNNNNGC	4 cut(s)	211, 803, 1075, 1103
NciI	CCSGG	2 cut(s)	207, 401
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	4 cut(s)	134, 393, 652, 1005
NlaIII	CATG	5 cut(s)	253, 587, 659, 1019, 1059
NlaIV	GGNNCC	4 cut(s)	181, 192, 204, 738
OliI	CACNNNNGTG	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	812
PagI	TCATGA	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	4 cut(s)	82, 500, 596, 787
PflMI	CCANNNNNTGG	1 cut(s)	916
PkrI	GCNGC	8 cut(s)	46, 246, 808, 838, 1068, 1073, 1094, 1105
PleI	GAGTC	2 cut(s)	349, 714
PpsI	GAGTC	2 cut(s)	349, 714
PsiI	TTATAA	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	181, 192, 204, 738
PspPI	GGNCC	4 cut(s)	161, 272, 398, 845
PspXI	VCTCGAGB	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	946
RsaNI	GTAC	1 cut(s)	945
RseI	CAYNNNNRTG	4 cut(s)	35, 70, 660, 1060
SaqAI	TTAA	2 cut(s)	930, 1083
SatI	GCNGC	8 cut(s)	45, 245, 807, 837, 1067, 1072, 1093, 1104
Sau3AI	GATC	4 cut(s)	134, 393, 652, 1005
Sau96I	GGNCC	4 cut(s)	161, 272, 398, 845
SchI	GAGTC	2 cut(s)	350, 715
ScrFI	CCNGG	2 cut(s)	207, 401
SduI	GDGCHC	2 cut(s)	182, 739
SfaNI	GCATC	3 cut(s)	4, 131, 1021
SfcI	CTRYAG	1 cut(s)	768
Sfr274I	CTCGAG	1 cut(s)	812
SlaI	CTCGAG	1 cut(s)	812
SmiMI	CAYNNNNRTG	4 cut(s)	35, 70, 660, 1060
SmlI	CTYRAG	3 cut(s)	88, 504, 812
SmoI	CTYRAG	3 cut(s)	88, 504, 812
SsiI	CCGC	8 cut(s)	42, 806, 837, 1066, 1071, 1092, 1097, 1106
SspMI	CTAG	1 cut(s)	969
StyD4I	CCNGG	2 cut(s)	205, 399
StyI	CCWWGG	1 cut(s)	910
TaiI	ACGT	3 cut(s)	941, 1064, 1090
TaqI	TCGA	6 cut(s)	131, 225, 550, 573, 813, 1031
TatI	WGTACW	1 cut(s)	944
TauI	GCSGC	5 cut(s)	809, 839, 1069, 1074, 1095
TfiI	GAWTC	4 cut(s)	82, 500, 596, 787
Tru1I	TTAA	2 cut(s)	930, 1083
Tru9I	TTAA	2 cut(s)	930, 1083
TseI	GCWGC	3 cut(s)	44, 244, 1103
TspDTI	ATGAA	6 cut(s)	348, 384, 438, 539, 672, 954
TspGWI	ACGGA	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	916
XhoI	CTCGAG	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.