Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Forward (+)

9514695 .. 9515674

Gene Structure 980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22425.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGATTGGCAAGGACAGAAACTGGTGGAGCAGCTGATGCAGATCTTACTGGTGATCTCCGGCGTTGTAGCGGTGGTTGTTGGCTACACAACGGAATCGTTCAGGACGATGATGCTGATCTATGCCGGTGGTGTTGTTCTCACGACTTTGGTTACTGTACCTAATTGGCCTTTCTACAATCTTCATCCTCTCAAATGGTTAGATCCGAGCGAAGCCGAGAAGCATCCCAAACCAGAAGTTGTCAGTGTTGCTTCGAAGAAGAAATTCTCTAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

92

Amino Acids

10.37

Weight (kDa)

9.3

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC12	PF06645	1 - 70	9.2e-32	Microsomal signal peptidase 12 kDa subunit (SPC12)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	1 cut(s)	159
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmsI	GCATC	3 cut(s)	27, 102, 232
Bpu14I	TTCGAA	1 cut(s)	254
BsaBI	GATNNNNATC	2 cut(s)	41, 116
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	27, 54
Bse8I	GATNNNNATC	2 cut(s)	41, 116
BseGI	GGATG	2 cut(s)	184, 223
BseJI	GATNNNNATC	2 cut(s)	41, 116
BseNI	ACTGG	2 cut(s)	27, 54
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	60, 126
BsnI	GGCC	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	42, 54, 117, 202
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	27, 54
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	4 cut(s)	42, 54, 117, 202
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	184, 223
BstKTI	GATC	4 cut(s)	45, 57, 120, 205
BstMBI	GATC	4 cut(s)	42, 54, 117, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	42, 202
BstYI	RGATCY	2 cut(s)	42, 202
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	184, 223
BtsIMutI	CAGTG	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	4 cut(s)	34, 84, 169, 215
CviKI_1	RGCY	4 cut(s)	34, 84, 169, 215
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	44, 56, 119, 204
DpnII	GATC	4 cut(s)	42, 54, 117, 202
FaiI	YATR	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	2 cut(s)	171, 210
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	60, 126
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	60, 126
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	103, 142
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	42, 54, 117, 202
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	8, 35, 73, 88, 139, 246
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	3 cut(s)	27, 102, 232
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	4 cut(s)	44, 56, 119, 204
MboI	GATC	4 cut(s)	42, 54, 117, 202
MboII	GAAGA	3 cut(s)	173, 268, 271
MflI	RGATCY	2 cut(s)	42, 202
MluCI	AATT	2 cut(s)	163, 263
MnlI	CCTC	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	2 cut(s)	60, 126
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	4 cut(s)	42, 54, 117, 202
NmeAIII	GCCGAG	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	42, 202
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	4 cut(s)	42, 54, 117, 202
SetI	ASST	2 cut(s)	36, 163
SfaNI	GCATC	3 cut(s)	27, 102, 232
SfuI	TTCGAA	1 cut(s)	254
Sse9I	AATT	2 cut(s)	163, 263
SsiI	CCGC	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	163, 263
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.