Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Forward (+)

24138701 .. 24140149

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G228300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACGATTATGATTTCATTCACGGACCGAAGCTTGCAAAGCAAGGGGTTCTCCTCAGAGTTCATTTCAAGATGGATTGGCAAGGCCAAAAGCTAGCTGAGCAGTTGATGCAGATACTGCTGTTGGTGTTCGCGGTGGTGGGTTTCCTCGCTGGTTACATAACTGGGTCGTTCCAGATGATGGTTCTCACATATGCTGGTGGTGTGGTTCTCACCACATTGGTCACTGTCCCCAACTGGCCTTTCTTCAATCGCAACCCGCTCAAGTGGTTGGACCCGAGCGAAGCCGAGAAGCATCCCAAGCCGCAGCCACAGCAGCCTGTGAGTTCAAAGAAGAAAGCCTCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

9.82

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	262
AccII	CGCG	1 cut(s)	134
AciI	CCGC	3 cut(s)	134, 260, 305
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	70, 250, 330
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	34, 94, 98
AluI	AGCT	3 cut(s)	34, 94, 98
AlwNI	CAGNNNCTG	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	85, 239
ApeKI	GCWGC	2 cut(s)	307, 316
AspS9I	GGNCC	2 cut(s)	26, 274
AsuHPI	GGTGA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	26, 274
BaeI	ACNNNNGTAYC	2 cut(s)	107, 140
BbvI	GCAGC	2 cut(s)	319, 328
BccI	CCATC	2 cut(s)	67, 175
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	305, 308, 317
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	3 cut(s)	306, 309, 318
Bme18I	GGWCC	2 cut(s)	26, 274
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	26, 274
BmiI	GGNNCC	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	99, 304
BmtI	GCTAGC	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	169, 242
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	70, 90
BseNI	ACTGG	2 cut(s)	169, 242
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	319, 328
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	87, 241
BsiHKCI	CYCGRG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	87, 241
BsoBI	CYCGRG	1 cut(s)	277
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	3 cut(s)	134, 260, 305
BspANI	GGCC	2 cut(s)	87, 241
BspCNI	CTCAG	2 cut(s)	69, 91
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	276
BspOI	GCTAGC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	169, 242
Bst4CI	ACNGT	1 cut(s)	229
BstAPI	GCANNNNNTGC	2 cut(s)	109, 118
BstC8I	GCNNGC	2 cut(s)	36, 96
BstDEI	CTNAG	2 cut(s)	56, 99
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 100, 109, 118, 301, 313, 316
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	319, 328
BsuRI	GGCC	2 cut(s)	87, 241
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	36, 96
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	26, 274
CpoI	CGGWCCG	1 cut(s)	26
CspI	CGGWCCG	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	56, 99
Eco47I	GGWCC	2 cut(s)	26, 274
Eco88I	CYCGRG	1 cut(s)	277
FaiI	YATR	4 cut(s)	12, 161, 193, 195
FaqI	GGGAC	1 cut(s)	215
FauI	CCCGC	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	305, 308, 317
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	305, 308, 317
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	3 cut(s)	305, 308, 317
HaeIII	GGCC	2 cut(s)	87, 241
HindIII	AAGCTT	1 cut(s)	32
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	70, 175
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	38, 112
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 100, 109, 118, 301, 313, 316
HpyF3I	CTNAG	2 cut(s)	56, 99
LpnPI	CCDG	6 cut(s)	138, 150, 183, 188, 223, 333
Lsp1109I	GCAGC	2 cut(s)	319, 328
LweI	GCATC	2 cut(s)	99, 304
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	155, 223
MbiI	CCGCTC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	238, 346
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	65, 158, 352
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	7 cut(s)	40, 100, 109, 118, 301, 313, 316
NdeI	CATATG	1 cut(s)	193
NheI	GCTAGC	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	306, 309, 318
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	26, 274
PstNI	CAGNNNCTG	1 cut(s)	118
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SatI	GCNGC	3 cut(s)	305, 308, 317
Sau96I	GGNCC	2 cut(s)	26, 274
SetI	ASST	3 cut(s)	36, 96, 100
SfaNI	GCATC	2 cut(s)	99, 304
SinI	GGWCC	2 cut(s)	26, 274
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	3 cut(s)	134, 260, 305
SspMI	CTAG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	229
TaqII	GACCGA	1 cut(s)	43
TauI	GCSGC	1 cut(s)	307
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	307, 316
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	7, 17, 53
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	26, 274
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.