Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Forward (+)

26249439 .. 26250342

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23930.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGATTGGCAAGGGCAAAAGCTAGCGGAGCAGCTGATGCAGATAATGCTGCTGGTGTTCGCGGTGGTTGGGTTTCTCACTGGTTACGTGATGGGTTCGTTCCAGGTGATGATGCTGGTGTATGCAGGTGGTGTGGTTCTGACCACATTGATCACTGTCCCCAATTGGCCCTATTTCAATCGCCACCCTCTCAAGTGGTTGGATCCAATTGAAGCCGAGAAGCACCCCAAGCCTCAGAAGCAGCAGCCTGTGAGTTTCAAGAAGAAAGGCTCCAAAGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

9.8

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC12	PF06645	1 - 69	8.9e-32	Microsomal signal peptidase 12 kDa subunit (SPC12)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	116
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	26, 62
AclWI	GGATC	2 cut(s)	197, 210
AgsI	TTSAA	3 cut(s)	178, 212, 259
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	22, 34, 278
AluI	AGCT	3 cut(s)	22, 34, 278
AlwI	GGATC	2 cut(s)	197, 210
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	4 cut(s)	31, 49, 241, 244
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	118
AsuNHI	GCTAGC	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	36, 43, 253, 256
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	150
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	4 cut(s)	32, 50, 242, 245
BlsI	GCNGC	4 cut(s)	33, 51, 243, 246
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	204, 271
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	27, 102
BmtI	GCTAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	4 cut(s)	36, 43, 253, 256
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	150, 202
BspACI	CCGC	2 cut(s)	26, 62
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	204, 271
BspMI	ACCTGC	1 cut(s)	116
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	197, 210
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	150, 202
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	2 cut(s)	37, 46
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	234, 279
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	153, 205
BstMBI	GATC	2 cut(s)	150, 202
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 37, 46, 229, 238
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	36, 43, 253, 256
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	78, 153
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	168
CviJI	RGCY	8 cut(s)	22, 34, 169, 215, 232, 247, 270, 278
CviKI_1	RGCY	8 cut(s)	22, 34, 169, 215, 232, 247, 270, 278
DdeI	CTNAG	2 cut(s)	234, 279
DpnI	GATC	2 cut(s)	152, 204
DpnII	GATC	2 cut(s)	150, 202
EcoRII	CCWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	123
FaqI	GGGAC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	32, 50, 242, 245
Fsp4HI	GCNGC	4 cut(s)	32, 50, 242, 245
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	4 cut(s)	32, 50, 242, 245
HaeIII	GGCC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	141, 237
Hpy188III	TCNNGA	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	40, 125
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 37, 46, 229, 238
HpyF3I	CTNAG	2 cut(s)	234, 279
HpySE526I	ACGT	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 202
LmnI	GCTCC	2 cut(s)	28, 275
LpnPI	CCDG	7 cut(s)	38, 66, 89, 101, 111, 116, 261
Lsp1109I	GCAGC	4 cut(s)	36, 43, 253, 256
LweI	GCATC	2 cut(s)	27, 102
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	152, 204
MboI	GATC	2 cut(s)	150, 202
MboII	GAAGA	1 cut(s)	274
MfeI	CAATTG	2 cut(s)	163, 207
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	2 cut(s)	163, 207
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	198, 243
MspA1I	CMGCKG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	2 cut(s)	163, 207
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	28, 37, 46, 229, 238
NdeII	GATC	2 cut(s)	150, 202
NheI	GCTAGC	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	204, 271
NmeAIII	GCCGAG	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	33, 51, 243, 246
Ppu21I	YACGTR	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	204, 271
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	34
SatI	GCNGC	4 cut(s)	32, 50, 242, 245
Sau3AI	GATC	2 cut(s)	150, 202
Sau96I	GGNCC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	24, 36, 90, 108, 130, 280
SfaNI	GCATC	2 cut(s)	27, 102
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	163, 207
SsiI	CCGC	2 cut(s)	26, 62
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	90
TasI	AATT	2 cut(s)	163, 207
TscAI	CASTG	2 cut(s)	85, 160
TseI	GCWGC	4 cut(s)	31, 49, 241, 244
TspRI	CASTG	2 cut(s)	85, 160
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.