Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341757.1

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 886

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341757.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 239 bp

atggattggcaagggcaaaagctagcggagcagctgatgcagatactgctgctggtggtgtggttctgaccacattagtcactgtccccaattggccctggttcaatcgccaccccctgaaatggttggacccaatcgaagccgaaaagcaccccaagcctcagaagcagcagcagccggtggtacctgttttggagatggtcattttctggtcgaatggttacggtcacatacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

78

Amino Acids

8.58

Weight (kDa)

8.36

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AciI	CCGC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	22, 34
AluI	AGCT	2 cut(s)	22, 34
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	5 cut(s)	31, 49, 168, 171, 174
Asp718I	GGTACC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	95, 129
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	36, 43, 180, 183, 186
BccI	CCATC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	99
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	5 cut(s)	32, 50, 169, 172, 175
BlsI	GCNGC	5 cut(s)	33, 51, 170, 173, 176
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	95, 129
BmiI	GGNNCC	2 cut(s)	131, 185
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	27
BmtI	GCTAGC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	175
BseXI	GCAGC	5 cut(s)	36, 43, 180, 183, 186
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	131, 185
BspOI	GCTAGC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	84, 226, 236
BstAPI	GCANNNNNTGC	2 cut(s)	37, 46
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 37, 46, 156, 165, 174
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	5 cut(s)	36, 43, 180, 183, 186
BsuRI	GGCC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	95, 129
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	6 cut(s)	22, 34, 96, 142, 159, 177
CviKI_1	RGCY	6 cut(s)	22, 34, 96, 142, 159, 177
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	97
FaiI	YATR	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	70
Fnu4HI	GCNGC	5 cut(s)	32, 50, 169, 172, 175
Fsp4HI	GCNGC	5 cut(s)	32, 50, 169, 172, 175
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	5 cut(s)	32, 50, 169, 172, 175
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	178
HpaII	CCGG	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	68, 164
HpyCH4III	ACNGT	3 cut(s)	84, 226, 236
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 37, 46, 156, 165, 174
HpyF3I	CTNAG	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	38, 84, 111, 130, 191, 195, 200
Lsp1109I	GCAGC	5 cut(s)	36, 43, 180, 183, 186
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	78, 220, 226
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	6 cut(s)	28, 37, 46, 156, 165, 174
NheI	GCTAGC	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	131, 185
NmuCI	GTSAC	2 cut(s)	78, 226
PkrI	GCNGC	5 cut(s)	33, 51, 170, 173, 176
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	131, 185
PspPI	GGNCC	2 cut(s)	95, 129
PstNI	CAGNNNCTG	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	5 cut(s)	32, 50, 169, 172, 175
Sau96I	GGNCC	2 cut(s)	95, 129
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	3 cut(s)	24, 36, 189
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	84, 226, 236
TaqI	TCGA	2 cut(s)	137, 214
TasI	AATT	1 cut(s)	90
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	78, 226
TseI	GCWGC	5 cut(s)	31, 49, 168, 171, 174
Tsp45I	GTSAC	2 cut(s)	78, 226
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	129
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.