Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Forward (+)

18559097 .. 18559570

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G40042.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGATTGGCAAGGGCAGAAATTGGCGGAGCAGTTAATGCAGATCCTGCTTCTGATCGCCGCCGTTGTGTCGTTCGTTGTTGGTTACACAACGGCGTCGTTTAGGATGATGATGTTGATTTACGCCGGAGGTGTTGTTCTGACGACTCTGATCACAATACCTAATTGGCCTTGCTTTAATCGTCATCATCTTAAGTGGTTAGATCCAAGTGAAGCAGAGAAACATCCTAAACCTCAAGTTGTTGTTGTTAGCTCCAAGAAGAAATCCTCCTCTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

9.78

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC12	PF06645	1 - 70	5.7e-32	Microsomal signal peptidase 12 kDa subunit (SPC12)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 60
AclWI	GGATC	2 cut(s)	37, 197
AcyI	GRCGYC	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
AlwI	GGATC	2 cut(s)	37, 197
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	167
BceAI	ACGGC	2 cut(s)	47, 108
BclI	TGATCA	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
BseGI	GGATG	2 cut(s)	111, 223
BseRI	GAGGAG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	42, 54, 150, 202
BspACI	CCGC	2 cut(s)	26, 60
BspANI	GGCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	37, 197
BspTI	CTTAAG	1 cut(s)	191
BssMI	GATC	4 cut(s)	42, 54, 150, 202
BssNI	GRCGYC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	191
BstAPI	GCANNNNNTGC	2 cut(s)	37, 46
BstF5I	GGATG	2 cut(s)	111, 223
BstKTI	GATC	4 cut(s)	45, 57, 153, 205
BstMBI	GATC	4 cut(s)	42, 54, 150, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 46
BstX2I	RGATCY	2 cut(s)	42, 202
BstYI	RGATCY	2 cut(s)	42, 202
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	111, 223
CaiI	CAGNNNCTG	1 cut(s)	46
CseI	GACGC	1 cut(s)	84
CviJI	RGCY	2 cut(s)	169, 252
CviKI_1	RGCY	2 cut(s)	169, 252
DpnI	GATC	4 cut(s)	44, 56, 152, 204
DpnII	GATC	4 cut(s)	42, 54, 150, 202
EciI	GGCGGA	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	2 cut(s)	118, 210
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	54, 141, 150
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 46
Hsp92I	GRCGYC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	42, 54, 150, 202
LmnI	GCTCC	2 cut(s)	28, 257
LpnPI	CCDG	2 cut(s)	59, 139
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	4 cut(s)	44, 56, 152, 204
MboI	GATC	4 cut(s)	42, 54, 150, 202
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	2 cut(s)	42, 202
MluCI	AATT	2 cut(s)	20, 163
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	122, 243, 277, 280
MseI	TTAA	3 cut(s)	35, 177, 192
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	37, 46
NdeII	GATC	4 cut(s)	42, 54, 150, 202
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	42, 202
SaqAI	TTAA	3 cut(s)	35, 177, 192
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	4 cut(s)	42, 54, 150, 202
SchI	GAGTC	1 cut(s)	139
SetI	ASST	4 cut(s)	133, 163, 235, 254
SgeI	CNNG	7 cut(s)	23, 58, 138, 183, 219, 248, 268
SmlI	CTYRAG	2 cut(s)	191, 234
SmoI	CTYRAG	2 cut(s)	191, 234
Sse9I	AATT	2 cut(s)	20, 163
SsiI	CCGC	2 cut(s)	26, 60
TasI	AATT	2 cut(s)	20, 163
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	35, 177, 192
Tru9I	TTAA	3 cut(s)	35, 177, 192
Vha464I	CTTAAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.