Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Reverse (-)

12207081 .. 12210485

Gene Structure 3405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTGAAGTACTCCAAAGAGCCCGATAATCCCACCAAGTCTTGCAAAGCAAGGGGCTCTGACCTCAGAGTTCATTTCAAGAACACAAGGGAGACTGCGTTCTCAATCAGGAAGATGTCCTTGATTAAGGCAAAGCGATATCTGGAGGATGTTTTGGTTCACAAGCAAGCCATTCCATTCAGACGTTTCTGCCGTGGTGTTGGGCGTACAGCTCAGGCCAAGAACAGGCATTCCAATGGCCAGGGACGCTGGCCTGTGAAATCTGCCAAGTTCATTTTGGATTTGCTTAAGAATGCGGAGAGCAATGCTGAAGTGAAGGGTTTGGATGTTGACTCTCTTGTTGTATCTCACATCCAAGTCAACCAAGCACAGAAGCAAAGACGCCGAACATACCGTGCTCATGGAAGAATCAACCCATACATGTCATCTCCATGCCACATTGAGCTCACTTTGTCTGAAAAGGAAGAACCAGTGAAGAAAGAGCCAGACTCCCAATTGGCAACCAGCAAATCCAGGAAGTCCCAAGCTGTTCGCGGTGGTGCTCAATATTTGGCCTACCGGTGTAAAATCACTTGTTCCATTGAGAAATCCAGACAATCTCAGTTCGTCGCTCCCGTGCTTTCCCAGATGGATTGGCAAGGGCAAAAGCTAGCGGAGCAGCTGATGCAGATACTGCTGCTGGTATTTGCTGTGGTTGGGTTTTTGACTGGTTACCTGATGGGGTCGTTCCAGATGATGATGCTGGTGTATGCAGGTGGTGTGGTTCTGACCACATTAGTCACTGTCCCCAATTGGCCCTGGTTCAATCGCCACCCGCTGAAATGGTTGGACCCAATCGAAGCCGAAAAGCACCCCAAGCCTCAGAAGCAGCAGCAGCCGGTGAGTTCCAAGAAGAAAGGCTCCAAAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

305

Amino Acids

34.62

Weight (kDa)

10.18

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	17 - 151	2.5e-31	Ribosomal protein L22p/L17e
SPC12	PF06645	210 - 278	1e-30	Microsomal signal peptidase 12 kDa subunit (SPC12)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	743
AccII	CGCG	1 cut(s)	534
AciI	CCGC	4 cut(s)	296, 534, 653, 815
AcoI	YGGCCR	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	11, 208
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	420
AgeI	ACCGGT	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	79, 805
AjnI	CCWGG	3 cut(s)	240, 512, 797
AloI	GAACNNNNNNTCC	4 cut(s)	83, 115, 215, 247
AluBI	AGCT	5 cut(s)	212, 445, 527, 649, 661
AluI	AGCT	5 cut(s)	212, 445, 527, 649, 661
Alw21I	GWGCWC	3 cut(s)	400, 447, 544
Alw26I	GTCTC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	673
AoxI	GGCC	5 cut(s)	216, 238, 251, 552, 794
ApeKI	GCWGC	5 cut(s)	658, 676, 868, 871, 874
AsiGI	ACCGGT	1 cut(s)	558
AspS9I	GGNCC	2 cut(s)	795, 829
AsuHPI	GGTGA	2 cut(s)	16, 892
AsuNHI	GCTAGC	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	829
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	3 cut(s)	24, 59, 447
Bbv12I	GWGCWC	3 cut(s)	400, 447, 544
BbvI	GCAGC	5 cut(s)	663, 670, 880, 883, 886
BccI	CCATC	2 cut(s)	622, 712
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	3 cut(s)	242, 514, 799
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	650
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	743
BisI	GCNGC	5 cut(s)	659, 677, 869, 872, 875
BlsI	GCNGC	5 cut(s)	660, 678, 870, 873, 876
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	242, 514, 799
Bme18I	GGWCC	1 cut(s)	829
BmgT120I	GGNCC	2 cut(s)	795, 829
BmiI	GGNNCC	2 cut(s)	831, 901
BmrFI	CCNGG	3 cut(s)	242, 514, 799
BmsI	GCATC	2 cut(s)	654, 729
BmtI	GCTAGC	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	193, 241, 797
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	2 cut(s)	558, 877
Bse1I	ACTGG	2 cut(s)	470, 712
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	242, 514, 799
BseDI	CCNNGG	3 cut(s)	193, 241, 797
BseGI	GGATG	3 cut(s)	154, 331, 351
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	4 cut(s)	79, 227, 614, 875
BseNI	ACTGG	2 cut(s)	470, 712
BseXI	GCAGC	5 cut(s)	663, 670, 880, 883, 886
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	5 cut(s)	218, 240, 253, 554, 796
BshTI	ACCGGT	1 cut(s)	558
BsiHKAI	GWGCWC	3 cut(s)	400, 447, 544
BsiSI	CCGG	2 cut(s)	559, 878
BslFI	GGGAC	3 cut(s)	258, 505, 770
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	3 cut(s)	258, 505, 770
BsmI	GAATGC	2 cut(s)	229, 298
BsnI	GGCC	5 cut(s)	218, 240, 253, 554, 796
Bsp1286I	GDGCHC	5 cut(s)	24, 59, 400, 447, 544
BspACI	CCGC	4 cut(s)	296, 534, 653, 815
BspANI	GGCC	5 cut(s)	218, 240, 253, 554, 796
BspCNI	CTCAG	4 cut(s)	78, 226, 613, 874
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	831, 901
BspMI	ACCTGC	1 cut(s)	743
BspOI	GCTAGC	1 cut(s)	653
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	2 cut(s)	558, 877
BsrI	ACTGG	2 cut(s)	470, 712
BssAI	RCCGGY	2 cut(s)	558, 877
BssECI	CCNNGG	3 cut(s)	193, 241, 797
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	3 cut(s)	242, 514, 799
Bst4CI	ACNGT	2 cut(s)	395, 784
BstACI	GRCGYC	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	2 cut(s)	664, 673
BstC8I	GCNNGC	3 cut(s)	168, 251, 651
BstDEI	CTNAG	4 cut(s)	65, 213, 600, 861
BstDSI	CCRYGG	1 cut(s)	193
BstEII	GGTNACC	1 cut(s)	710
BstF5I	GGATG	3 cut(s)	154, 331, 351
BstFNI	CGCG	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	7 cut(s)	246, 655, 664, 673, 856, 865, 874
BstNI	CCWGG	3 cut(s)	242, 514, 799
BstNSI	RCATGY	1 cut(s)	424
BstPI	GGTNACC	1 cut(s)	710
BstSCI	CCNGG	3 cut(s)	240, 512, 797
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	5 cut(s)	663, 670, 880, 883, 886
BsuRI	GGCC	5 cut(s)	218, 240, 253, 554, 796
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	154, 331, 351
BtsIMutI	CAGTG	2 cut(s)	477, 780
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	3 cut(s)	168, 251, 651
CaiI	CAGNNNCTG	1 cut(s)	673
Cfr10I	RCCGGY	2 cut(s)	558, 877
Cfr13I	GGNCC	2 cut(s)	795, 829
CseI	GACGC	2 cut(s)	255, 390
Csp6I	GTAC	2 cut(s)	10, 207
CspAI	ACCGGT	1 cut(s)	558
CviAII	CATG	3 cut(s)	401, 421, 432
CviQI	GTAC	2 cut(s)	10, 207
DdeI	CTNAG	4 cut(s)	65, 213, 600, 861
EaeI	YGGCCR	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	3 cut(s)	24, 59, 447
Eco32I	GATATC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	829
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	240, 512, 797
EcoRV	GATATC	1 cut(s)	140
EcoT38I	GRGCYC	3 cut(s)	24, 59, 447
FaeI	CATG	3 cut(s)	404, 424, 435
FaiI	YATR	6 cut(s)	391, 402, 418, 422, 433, 750
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	3 cut(s)	258, 505, 770
FatI	CATG	3 cut(s)	400, 420, 431
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	5 cut(s)	659, 677, 869, 872, 875
FokI	GGATG	3 cut(s)	161, 338, 338
FriOI	GRGCYC	3 cut(s)	24, 59, 447
Fsp4HI	GCNGC	5 cut(s)	659, 677, 869, 872, 875
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	5 cut(s)	659, 677, 869, 872, 875
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	5 cut(s)	218, 240, 253, 554, 796
HapII	CCGG	2 cut(s)	559, 878
HgaI	GACGC	2 cut(s)	255, 390
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	404, 424, 435
HincII	GTYRAC	2 cut(s)	331, 361
HindII	GTYRAC	2 cut(s)	331, 361
HinfI	GANTC	3 cut(s)	332, 408, 488
HpaII	CCGG	2 cut(s)	559, 878
HphI	GGTGA	2 cut(s)	16, 892
Hpy166II	GTNNAC	3 cut(s)	160, 331, 361
Hpy188I	TCNGA	6 cut(s)	61, 68, 182, 457, 768, 864
Hpy188III	TCNNGA	5 cut(s)	79, 109, 143, 591, 730
Hpy8I	GTNNAC	3 cut(s)	160, 331, 361
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	395, 784
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	45, 667, 752
HpyF10VI	GCNNNNNNNGC	7 cut(s)	246, 655, 664, 673, 856, 865, 874
HpyF3I	CTNAG	4 cut(s)	65, 213, 600, 861
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	404, 424, 435
LmnI	GCTCC	3 cut(s)	616, 655, 905
Lsp1109I	GCAGC	5 cut(s)	663, 670, 880, 883, 886
LweI	GCATC	2 cut(s)	654, 729
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	710, 778
MboII	GAAGA	5 cut(s)	124, 417, 476, 487, 904
MfeI	CAATTG	2 cut(s)	494, 790
MhlI	GDGCHC	5 cut(s)	24, 59, 400, 447, 544
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	2 cut(s)	494, 790
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	326, 482
MmeI	TCCRAC	1 cut(s)	807
MnlI	CCTC	3 cut(s)	74, 139, 870
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	126, 288
MslI	CAYNNNNRTG	2 cut(s)	234, 430
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	661, 817
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	2 cut(s)	559, 878
MspR9I	CCNGG	3 cut(s)	242, 514, 799
MunI	CAATTG	2 cut(s)	494, 790
Mva1269I	GAATGC	2 cut(s)	229, 298
MvaI	CCWGG	3 cut(s)	242, 514, 799
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	7 cut(s)	246, 655, 664, 673, 856, 865, 874
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	3 cut(s)	404, 424, 435
NlaIV	GGNNCC	2 cut(s)	831, 901
NmuCI	GTSAC	1 cut(s)	778
NspI	RCATGY	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	743
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 612
PctI	GAATGC	2 cut(s)	229, 298
PfeI	GAWTC	1 cut(s)	408
PfoI	TCCNGGA	1 cut(s)	512
PinAI	ACCGGT	1 cut(s)	558
PkrI	GCNGC	5 cut(s)	660, 678, 870, 873, 876
PleI	GAGTC	2 cut(s)	326, 482
PpsI	GAGTC	2 cut(s)	326, 482
PscI	ACATGT	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	240, 512, 797
PspEI	GGTNACC	1 cut(s)	710
PspGI	CCWGG	3 cut(s)	240, 512, 797
PspN4I	GGNNCC	2 cut(s)	831, 901
PspPI	GGNCC	2 cut(s)	795, 829
PstNI	CAGNNNCTG	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	2 cut(s)	11, 208
RsaNI	GTAC	2 cut(s)	10, 207
RseI	CAYNNNNRTG	2 cut(s)	234, 430
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	126, 288
SatI	GCNGC	5 cut(s)	659, 677, 869, 872, 875
Sau96I	GGNCC	2 cut(s)	795, 829
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	2 cut(s)	326, 482
ScrFI	CCNGG	3 cut(s)	242, 514, 799
SduI	GDGCHC	5 cut(s)	24, 59, 400, 447, 544
SetI	ASST	9 cut(s)	66, 187, 214, 447, 529, 651, 663, 717, 757
SfaNI	GCATC	2 cut(s)	654, 729
SinI	GGWCC	1 cut(s)	829
SmiMI	CAYNNNNRTG	2 cut(s)	234, 430
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	494, 790
SsiI	CCGC	4 cut(s)	296, 534, 653, 815
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	240, 512, 797
TaaI	ACNGT	2 cut(s)	395, 784
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	837
TasI	AATT	2 cut(s)	494, 790
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	2 cut(s)	126, 288
Tru9I	TTAA	2 cut(s)	126, 288
TscAI	CASTG	2 cut(s)	477, 787
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	5 cut(s)	658, 676, 868, 871, 874
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	2 cut(s)	62, 262
TspRI	CASTG	2 cut(s)	477, 787
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	829
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	650
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.