Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014094

Physical Location & Seq

Genomic Coordinates Reverse (-)

8573123 .. 8574091

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1117200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCAGATACTGCTACTGGTCTTCGCCGTTGTGGGTTTCGCCACCGGTTACATAACCGGATCGTTCCAGATGATGACTCTGACTTACGCTGGTGGCGTGGTTCTCACGACATTGGTCACCGTCCCCAATTGGCCCTTCTTCAATCGCCACCCCCTCAAGTGGTTGGACCCGAGCGAAGCCGAGAAGCATCCCAAGCCGCAGCCGCAGCCGCAGCAGCACTCGACCTCGAAGAAGAAATCCTCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC12

Protein Analysis

84

Amino Acids

9.31

Weight (kDa)

10.0

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC12	PF06645	1 - 58	1.9e-23	Microsomal signal peptidase 12 kDa subunit (SPC12)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22425 AT2G22425 AT4G40042
fragaria_vesca	FvH4_4g23930 FvH4_4g23930
malus_domestica	MD13G1117200.v1.1
prunus_persica	Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1 Prupe.1G228300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430591
rosa_laevigata	RLG00000006968
rosa_multiflora	Rmu_co8341757.1_g000001
rosa_rugosa	Rorug04G0244600 Rorug04G0244600
rosa_samantha	Rh4BG307600 Rh4DG304800
rosa_wichuraiana	Rw4G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	197, 203, 209
AclWI	GGATC	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	4 cut(s)	199, 205, 211, 214
AsiGI	ACCGGT	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	132, 166
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	211, 217, 223, 226
BceAI	ACGGC	1 cut(s)	11
BisI	GCNGC	7 cut(s)	197, 200, 203, 206, 209, 212, 215
BlsI	GCNGC	7 cut(s)	198, 201, 204, 207, 210, 213, 216
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	132, 166
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	196
BoxI	GACNNNNGTC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	140
BsaWI	WCCGGW	2 cut(s)	44, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	4 cut(s)	211, 217, 223, 226
BshFI	GGCC	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	45, 57
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	3 cut(s)	197, 203, 209
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 193, 202, 205, 208, 211, 214
BstPAI	GACNNNNGTC	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	115
BstV1I	GCAGC	4 cut(s)	211, 217, 223, 226
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	132, 166
CspAI	ACCGGT	1 cut(s)	44
CviJI	RGCY	5 cut(s)	133, 179, 196, 202, 208
CviKI_1	RGCY	5 cut(s)	133, 179, 196, 202, 208
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
FaiI	YATR	1 cut(s)	53
FaqI	GGGAC	1 cut(s)	107
Fnu4HI	GCNGC	7 cut(s)	197, 200, 203, 206, 209, 212, 215
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	7 cut(s)	197, 200, 203, 206, 209, 212, 215
GluI	GCNGC	7 cut(s)	197, 200, 203, 206, 209, 212, 215
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	45, 57
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	45, 57
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	2 cut(s)	67, 106
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 193, 202, 205, 208, 211, 214
Kzo9I	GATC	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	2, 58, 70, 75, 80
Lsp1109I	GCAGC	4 cut(s)	211, 217, 223, 226
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	47, 115
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	4 cut(s)	13, 130, 241, 244
MfeI	CAATTG	1 cut(s)	127
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	3 cut(s)	164, 235, 250
MspI	CCGG	2 cut(s)	45, 57
MunI	CAATTG	1 cut(s)	127
MwoI	GCNNNNNNNGC	7 cut(s)	10, 193, 202, 205, 208, 211, 214
NdeII	GATC	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	7 cut(s)	198, 201, 204, 207, 210, 213, 216
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PshAI	GACNNNNGTC	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	132, 166
PstNI	CAGNNNCTG	1 cut(s)	10
SatI	GCNGC	7 cut(s)	197, 200, 203, 206, 209, 212, 215
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	2 cut(s)	132, 166
SchI	GAGTC	1 cut(s)	70
SetI	ASST	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	3 cut(s)	197, 203, 209
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	221, 227
TasI	AATT	1 cut(s)	127
TauI	GCSGC	3 cut(s)	199, 205, 211
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	199, 205, 211, 214
Tsp45I	GTSAC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.