AT2G22460

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015260
Physical Location & Seq
Reverse (-)
9533094 .. 9534188
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22460.1

Sequence Viewer

Length: 738 bp
ATGTCAAAGAGCAAAGTCATAGCTTCAATGGAGTTTCAATCGACGGTGGTAGCAACCGTAGACTGCCAGAAACAAGTCCGGTCATGGCGTCTCCTCCGCTCATTCATTCAGCTTTTAATCCCAACTTGCAACTGCACATTAGTCCAAGAACTCGAACAAGATAACACTAACTTGAGAGGCAAGAAACTCTACAATGACATCAAATCACGCACGTCTTCCTTTCGCTCCTCTTCGTCCCTTTCTTCATCTACAGTCACAGGAACAATCTTCGGATACCGAAAAGGAAAAATCAATTTCTGTATCCAAACACCAAGAAAATCGACAAACCTTGATCTTCTCCTCGAGCTAGCAGTTCCAACGACGGTTTTAGCTCGAGAAATGAGAGAAGGAGCGTTGCGTATAGTGTTAGAACGTAACAACGAAAAACAAGACGACGACTCTTTTTTGTCAAAGCCATTTTGGAACATGTATTGCAATGGAAAAAGAGTTGGTTATGCGAGAAAACGCAGTCCCTCTCAGGATGACATGACGGCGTTGACCGCTCTTAGTAAAGTGGTGGTTGGAGCAGGAGTTGTGACTGGGAAAGAACTTGGCCGGTTCGATGATGAATTGATGTATTTGAGAGCTAGTTTCAGACGAGTTAATGGTTCGAAAGAATCTGAATCTTTCCATTTGATTGATCCAGCTGGGAATATTGGACAAGAACTCAGTATCTTCATTGTCCCATCATCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

245

Amino Acids

27.47

Weight (kDa)

9.51

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 85 - 241 1.6e-59 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22460 AT5G65340
fragaria_vesca FvH4_1g20130
malus_domestica MD15G1317100.v1.1
prunus_persica Prupe.6G194800_v2.0.a1
pyrus_communis pycom15g27970
rosa_chinensis RchiOBHm_Chr2g0112181
rosa_laevigata RLG00000017956
rosa_multiflora Rmu_sc0000360.1_g000039
rosa_roxburghii Rroxscaffold_2G00131710
rosa_rugosa Rorug02G0178900
rosa_samantha Rh2AG231100 Rh2BG244100 Rh2CG235500 Rh2DG238900
rosa_wichuraiana Rw2G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 99, 542
AccI GTMKAC 1 cut(s) 60
AciI CCGC 2 cut(s) 97, 540
AclWI GGATC 1 cut(s) 674
AcoI YGGCCR 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 27, 38
AjiI CACGTC 1 cut(s) 213
AluBI AGCT 6 cut(s) 23, 112, 346, 371, 626, 686
AluI AGCT 6 cut(s) 23, 112, 346, 371, 626, 686
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 674
Ama87I CYCGRG 2 cut(s) 341, 372
AoxI GGCC 1 cut(s) 592
AsuII TTCGAA 1 cut(s) 650
AsuNHI GCTAGC 1 cut(s) 346
AvaI CYCGRG 2 cut(s) 341, 372
BbsI GAAGAC 1 cut(s) 207
BccI CCATC 1 cut(s) 733
BceAI ACGGC 1 cut(s) 546
BciVI GTATCC 2 cut(s) 266, 311
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 347, 627
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 2 cut(s) 266, 311
BmeT110I CYCGRG 2 cut(s) 341, 372
BmgBI CACGTC 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 588
BmtI GCTAGC 1 cut(s) 350
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 1 cut(s) 583
Bse3DI GCAATG 1 cut(s) 481
BseGI GGATG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 2 cut(s) 530, 721
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 3 cut(s) 83, 217, 329
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 1 cut(s) 594
BsiHKCI CYCGRG 2 cut(s) 341, 372
BsiSI CCGG 2 cut(s) 79, 595
BslFI GGGAC 3 cut(s) 220, 495, 707
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 3 cut(s) 220, 495, 707
BsnI GGCC 1 cut(s) 594
BsoBI CYCGRG 2 cut(s) 341, 372
Bsp119I TTCGAA 1 cut(s) 650
Bsp143I GATC 2 cut(s) 331, 679
BspACI CCGC 2 cut(s) 97, 540
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 529, 720
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 674
BspT104I TTCGAA 1 cut(s) 650
BsrBI CCGCTC 2 cut(s) 99, 542
BsrDI GCAATG 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 1 cut(s) 583
BssAI RCCGGY 1 cut(s) 594
BssMI GATC 2 cut(s) 331, 679
BssNI GRCGYC 1 cut(s) 88
Bst4CI ACNGT 4 cut(s) 46, 58, 253, 364
Bst6I CTCTTC 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 516, 545, 707
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 2 cut(s) 334, 682
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 331, 679
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 207
BsuI GTATCC 2 cut(s) 266, 311
BsuRI GGCC 1 cut(s) 594
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 594
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 84, 466, 526
CviJI RGCY 8 cut(s) 23, 112, 346, 371, 454, 594, 626, 686
CviKI_1 RGCY 8 cut(s) 23, 112, 346, 371, 454, 594, 626, 686
DdeI CTNAG 3 cut(s) 516, 545, 707
DpnI GATC 2 cut(s) 333, 681
DpnII GATC 2 cut(s) 331, 679
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 341, 372
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 87, 469, 529
FaiI YATR 6 cut(s) 20, 85, 401, 467, 495, 527
FaqI GGGAC 3 cut(s) 220, 495, 707
FatI CATG 3 cut(s) 83, 465, 525
FblI GTMKAC 1 cut(s) 60
FokI GGATG 1 cut(s) 533
FspBI CTAG 2 cut(s) 347, 627
GsaI CCCAGC 1 cut(s) 690
HaeIII GGCC 1 cut(s) 594
HapII CCGG 2 cut(s) 79, 595
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 3 cut(s) 87, 469, 529
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 3 cut(s) 437, 656, 662
HpaII CCGG 2 cut(s) 79, 595
Hpy166II GTNNAC 2 cut(s) 61, 537
Hpy188I TCNGA 4 cut(s) 272, 635, 661, 737
Hpy188III TCNNGA 2 cut(s) 374, 518
Hpy8I GTNNAC 2 cut(s) 61, 537
Hpy99I CGWCG 3 cut(s) 46, 364, 437
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 4 cut(s) 46, 58, 253, 364
HpyCH4IV ACGT 2 cut(s) 212, 412
HpyCH4V TGCA 3 cut(s) 129, 135, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 3 cut(s) 516, 545, 707
HpySE526I ACGT 2 cut(s) 212, 412
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 3 cut(s) 87, 469, 529
Kzo9I GATC 2 cut(s) 331, 679
LmnI GCTCC 3 cut(s) 230, 389, 563
LpnPI CCDG 9 cut(s) 80, 92, 243, 503, 552, 564, 608, 672, 696
MaeI CTAG 2 cut(s) 347, 627
MaeII ACGT 2 cut(s) 212, 412
MaeIII GTNAC 3 cut(s) 253, 413, 574
MalI GATC 2 cut(s) 333, 681
MbiI CCGCTC 2 cut(s) 99, 542
MboI GATC 2 cut(s) 331, 679
MboII GAAGA 6 cut(s) 207, 222, 234, 259, 326, 706
MluCI AATT 2 cut(s) 292, 608
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 380, 541
MnlI CCTC 5 cut(s) 104, 170, 238, 350, 523
MseI TTAA 2 cut(s) 116, 642
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 2 cut(s) 79, 595
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 2 cut(s) 331, 679
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 3 cut(s) 87, 469, 529
NmuCI GTSAC 2 cut(s) 253, 574
NspI RCATGY 1 cut(s) 469
NspV TTCGAA 1 cut(s) 650
PaeR7I CTCGAG 2 cut(s) 341, 372
PciI ACATGT 1 cut(s) 465
PfeI GAWTC 2 cut(s) 656, 662
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PscI ACATGT 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 686
PspXI VCTCGAGB 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 686
SaqAI TTAA 2 cut(s) 116, 642
Sau3AI GATC 2 cut(s) 331, 679
SchI GAGTC 1 cut(s) 431
SetI ASST 9 cut(s) 25, 114, 215, 330, 348, 373, 415, 628, 688
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 2 cut(s) 341, 372
SfuI TTCGAA 1 cut(s) 650
SlaI CTCGAG 2 cut(s) 341, 372
SmlI CTYRAG 3 cut(s) 172, 341, 372
SmoI CTYRAG 3 cut(s) 172, 341, 372
Sse9I AATT 2 cut(s) 292, 608
SsiI CCGC 2 cut(s) 97, 540
SspI AATATT 1 cut(s) 694
SspMI CTAG 2 cut(s) 347, 627
TaaI ACNGT 4 cut(s) 46, 58, 253, 364
TaiI ACGT 2 cut(s) 215, 415
TaqI TCGA 7 cut(s) 41, 153, 320, 342, 373, 600, 650
TasI AATT 2 cut(s) 292, 608
TfiI GAWTC 2 cut(s) 656, 662
Tru1I TTAA 2 cut(s) 116, 642
Tru9I TTAA 2 cut(s) 116, 642
TseFI GTSAC 2 cut(s) 253, 574
Tsp45I GTSAC 2 cut(s) 253, 574
TspDTI ATGAA 4 cut(s) 94, 234, 621, 706
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 2 cut(s) 341, 372
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 2 cut(s) 347, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.