Rh2BG244100

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015260
Physical Location & Seq
Forward (+)
24721889 .. 24723009
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG244100.1

Sequence Viewer

Length: 726 bp
ATGGCCTACCCAAGAGTTGGTGCTACCCACTTAACCAGCGCTGTCACCACCGTCGAGTGCCACAAACAAGTACGGTCATGGCGCCTTCTCCGCTCTCTAATCGAACTCCTGATCCCAACTTGCCACTGCACCTTCGTAGAAGAAGATCATCACCATCAAGAAACCAAAGAATTTGGCTTTCACTATCGGCGTCCAAGCTTTTCTTACCCCAACAACATCATAACCGGCACCATATTTGGGTACCGAAAAGGGAAAGTCCATTTCTGCATCCAAACAAACTCCAAGTCCAACCCAATTCTCCTGCTCGAGTTAGCTCTACCCACAACAGTCCTGGCCAAGGAAATGCAAGGAGGGTTTCTCAGAATAGCCCTCGAGTCTTCTACTCCGGGGTATAACAGTAATTCACCAAACTCCAGCTCTCTGTTGTCCACTCCGGTGTGGACTATGTACTGCAATAGCAGGAAAGTTGGGTATGCGGTTAAGCGAAGGCCTACGAAGCATGACTTGGAAGCTTTGAGGATGATGGGTTCGGTTGCGGTGGGTGCAGGGATTATAAGTGGGAATAAGGAGCTTAGCGATGGTGATGATGATGAGATTATGTACCTGCGAGCTAATTTTGAGAGAGTTTGTGGTTCGGCAAATTCGGAATCGTTTCATTTGATTGACCCAGATGAGAGTATTGGCCAGGAGCTTAGTATTTTCTTTTACCGTTCCAGAAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

241

Amino Acids

27.16

Weight (kDa)

8.51

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 74 - 237 4.2e-65 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22460 AT5G65340
fragaria_vesca FvH4_1g20130
malus_domestica MD15G1317100.v1.1
prunus_persica Prupe.6G194800_v2.0.a1
pyrus_communis pycom15g27970
rosa_chinensis RchiOBHm_Chr2g0112181
rosa_laevigata RLG00000017956
rosa_multiflora Rmu_sc0000360.1_g000039
rosa_roxburghii Rroxscaffold_2G00131710
rosa_rugosa Rorug02G0178900
rosa_samantha Rh2AG231100 Rh2BG244100 Rh2CG235500 Rh2DG238900
rosa_wichuraiana Rw2G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 612
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 3 cut(s) 81, 227, 240
AccB7I CCANNNNNTGG 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 93
AciI CCGC 3 cut(s) 91, 476, 536
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 333, 682
AcsI RAATTY 2 cut(s) 170, 640
AcyI GRCGYC 2 cut(s) 82, 190
AfaI GTAC 4 cut(s) 72, 242, 449, 602
AfeI AGCGCT 1 cut(s) 40
AfiI CCNNNNNNNGG 3 cut(s) 17, 237, 337
AjnI CCWGG 2 cut(s) 330, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 1 cut(s) 434
AloI GAACNNNNNNTCC 4 cut(s) 96, 128, 511, 543
AluBI AGCT 7 cut(s) 198, 314, 417, 512, 571, 611, 691
AluI AGCT 7 cut(s) 198, 314, 417, 512, 571, 611, 691
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 305, 371
Aor51HI AGCGCT 1 cut(s) 40
AoxI GGCC 4 cut(s) 3, 333, 488, 682
ApoI RAATTY 2 cut(s) 170, 640
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp700I GAANNNNTTC 1 cut(s) 651
Asp718I GGTACC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 41, 84
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 4 cut(s) 37, 143, 396, 593
AvaI CYCGRG 2 cut(s) 305, 371
BalI TGGCCA 2 cut(s) 335, 684
BanI GGYRCC 3 cut(s) 81, 227, 240
BbsI GAAGAC 1 cut(s) 369
BccI CCATC 3 cut(s) 162, 517, 572
BciT130I CCWGG 2 cut(s) 332, 686
BcnI CCSGG 1 cut(s) 387
BfoI RGCGCY 2 cut(s) 42, 85
BfuAI ACCTGC 1 cut(s) 612
BlpI GCTNAGC 1 cut(s) 572
Bme1390I CCNGG 3 cut(s) 332, 387, 686
BmeT110I CYCGRG 2 cut(s) 305, 371
BmiI GGNNCC 3 cut(s) 83, 229, 242
BmrFI CCNGG 3 cut(s) 332, 387, 686
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 387
BsaHI GRCGYC 2 cut(s) 82, 190
BsaJI CCNNGG 2 cut(s) 336, 386
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 237, 337
Bse118I RCCGGY 1 cut(s) 224
BseBI CCWGG 2 cut(s) 332, 686
BseDI CCNNGG 2 cut(s) 336, 386
BseGI GGATG 2 cut(s) 267, 525
BseLI CCNNNNNNNGG 3 cut(s) 17, 237, 337
BseMII CTCAG 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 112, 564
BshFI GGCC 4 cut(s) 5, 335, 490, 684
BshNI GGYRCC 3 cut(s) 81, 227, 240
BsiHKCI CYCGRG 2 cut(s) 305, 371
BsiSI CCGG 3 cut(s) 225, 386, 434
BslI CCNNNNNNNGG 3 cut(s) 17, 237, 337
BsnI GGCC 4 cut(s) 5, 335, 490, 684
BsoBI CYCGRG 2 cut(s) 305, 371
Bsp143I GATC 2 cut(s) 111, 145
Bsp1720I GCTNAGC 1 cut(s) 572
BspACI CCGC 3 cut(s) 91, 476, 536
BspANI GGCC 4 cut(s) 5, 335, 490, 684
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 3 cut(s) 83, 229, 242
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 3 cut(s) 81, 227, 240
BsrBI CCGCTC 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 336, 386
BssMI GATC 2 cut(s) 111, 145
BssNI GRCGYC 2 cut(s) 82, 190
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 332, 686
Bst4CI ACNGT 5 cut(s) 52, 75, 328, 398, 710
BstACI GRCGYC 2 cut(s) 82, 190
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 359, 572, 692
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 267, 525
BstH2I RGCGCY 2 cut(s) 42, 85
BstHHI GCGC 2 cut(s) 41, 84
BstKTI GATC 2 cut(s) 114, 148
BstMBI GATC 2 cut(s) 111, 145
BstMWI GCNNNNNNNGC 3 cut(s) 90, 496, 542
BstNI CCWGG 2 cut(s) 332, 686
BstSCI CCNGG 3 cut(s) 330, 385, 684
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 4 cut(s) 5, 335, 490, 684
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 267, 525
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 2 cut(s) 41, 84
Cfr10I RCCGGY 1 cut(s) 224
CseI GACGC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 71, 241, 448, 601
CviAII CATG 2 cut(s) 78, 500
CviQI GTAC 4 cut(s) 71, 241, 448, 601
DdeI CTNAG 3 cut(s) 359, 572, 692
DinI GGCGCC 1 cut(s) 83
DpnI GATC 2 cut(s) 113, 147
DpnII GATC 2 cut(s) 111, 145
EaeI YGGCCR 2 cut(s) 333, 682
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 490
Eco47III AGCGCT 1 cut(s) 40
Eco88I CYCGRG 2 cut(s) 305, 371
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 330, 684
EcoT14I CCWWGG 1 cut(s) 336
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 2 cut(s) 81, 503
FalI AAGNNNNNCTT 4 cut(s) 187, 219, 488, 520
FatI CATG 2 cut(s) 77, 499
FokI GGATG 2 cut(s) 254, 532
GlaI GCGC 2 cut(s) 40, 83
GsuI CTGGAG 1 cut(s) 397
HaeII RGCGCY 2 cut(s) 42, 85
HaeIII GGCC 4 cut(s) 5, 335, 490, 684
HapII CCGG 3 cut(s) 225, 386, 434
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 41, 84
Hin1I GRCGYC 2 cut(s) 82, 190
Hin1II CATG 2 cut(s) 81, 503
Hin6I GCGC 2 cut(s) 39, 82
HinP1I GCGC 2 cut(s) 39, 82
HindIII AAGCTT 2 cut(s) 196, 510
HinfI GANTC 2 cut(s) 374, 647
HpaII CCGG 3 cut(s) 225, 386, 434
HphI GGTGA 4 cut(s) 37, 143, 396, 593
Hpy166II GTNNAC 2 cut(s) 429, 441
Hpy188I TCNGA 2 cut(s) 362, 646
Hpy188III TCNNGA 3 cut(s) 109, 158, 714
Hpy8I GTNNAC 2 cut(s) 429, 441
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 95, 142, 480
HpyCH4III ACNGT 5 cut(s) 52, 75, 328, 398, 710
HpyCH4V TGCA 5 cut(s) 129, 267, 346, 453, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 496, 542
HpyF3I CTNAG 3 cut(s) 359, 572, 692
Hsp92I GRCGYC 2 cut(s) 82, 190
Hsp92II CATG 2 cut(s) 81, 503
HspAI GCGC 2 cut(s) 39, 82
KasI GGCGCC 1 cut(s) 81
KpnI GGTACC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 111, 145
LmnI GCTCC 2 cut(s) 568, 688
LweI GCATC 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 113, 147
MbiI CCGCTC 1 cut(s) 93
MboI GATC 2 cut(s) 111, 145
MboII GAAGA 3 cut(s) 152, 155, 369
MlsI TGGCCA 2 cut(s) 335, 684
MluCI AATT 5 cut(s) 170, 294, 400, 613, 640
MluNI TGGCCA 2 cut(s) 335, 684
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 3 cut(s) 344, 380, 510
Mox20I TGGCCA 2 cut(s) 335, 684
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 2 cut(s) 335, 684
MseI TTAA 2 cut(s) 32, 480
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 2 cut(s) 335, 684
MspI CCGG 3 cut(s) 225, 386, 434
MspR9I CCNGG 3 cut(s) 332, 387, 686
MvaI CCWGG 2 cut(s) 332, 686
MwoI GCNNNNNNNGC 3 cut(s) 90, 496, 542
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 387
NdeII GATC 2 cut(s) 111, 145
NlaIII CATG 2 cut(s) 81, 503
NlaIV GGNNCC 3 cut(s) 83, 229, 242
NmuCI GTSAC 1 cut(s) 43
OliI CACNNNNGTG 1 cut(s) 434
PaeR7I CTCGAG 2 cut(s) 305, 371
PceI AGGCCT 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 17
PleI GAGTC 1 cut(s) 382
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 382
PsiI TTATAA 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 330, 684
PspGI CCWGG 2 cut(s) 330, 684
PspN4I GGNNCC 3 cut(s) 83, 229, 242
PspXI VCTCGAGB 2 cut(s) 305, 371
RsaI GTAC 4 cut(s) 72, 242, 449, 602
RsaNI GTAC 4 cut(s) 71, 241, 448, 601
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 32, 480
Sau3AI GATC 2 cut(s) 111, 145
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 332, 387, 686
SetI ASST 9 cut(s) 134, 200, 316, 419, 514, 573, 606, 613, 693
SfaNI GCATC 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 83
Sfr274I CTCGAG 2 cut(s) 305, 371
SlaI CTCGAG 2 cut(s) 305, 371
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 305, 371
SmoI CTYRAG 2 cut(s) 305, 371
Sse9I AATT 5 cut(s) 170, 294, 400, 613, 640
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 3 cut(s) 91, 476, 536
SspDI GGCGCC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 3 cut(s) 330, 385, 684
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 5 cut(s) 52, 75, 328, 398, 710
TaqI TCGA 4 cut(s) 54, 102, 306, 372
TasI AATT 5 cut(s) 170, 294, 400, 613, 640
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 2 cut(s) 32, 480
Tru9I TTAA 2 cut(s) 32, 480
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 644
TspRI CASTG 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 2 cut(s) 170, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XhoI CTCGAG 2 cut(s) 305, 371
XmnI GAANNNNTTC 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.