FvH4_1g20130

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015260
Physical Location & Seq
Forward (+)
12343669 .. 12344946
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20130.t1

Sequence Viewer

Length: 717 bp
ATGGCGCACCCGAGAGTTGGTGCCACCCACATGACCAGCGCCGTCACCACCGTCGAGTGCCACAAACAAGTACGGTCATGGCGTCTTCTCCGCTCTCTCATCGAACTCCTCATCCCAACTTGCAACTGCACCTTCGTAGAAGAAGATCGTCACCATCATCATCAACAAACCAAAGAATTCGGTTTACACTATCGGCGTCCAAGCTTATCTTACCCCAACAACATCATCACCGGCACCATATTTGGGTACCGGAAAGGAAAAGTCCATTTCTGCATCCAAACAAACTCCAAGTCCAACCCAATTCTACTCCTCGAGTTAGCTCTACCCACAACAGTCCTGGCTAAGGAAATGCAAGGAGGGTTTCTCAGAATAGCCCTCGAGTCTTCTACTCCGGGGTATTCACCAAACTCGAGCTCTCTGTTGTCGACTCCGGTGTGGACTATGTACTGCAATAGCAGGAAAGTTGGGTATGCAGTTAAGCGAAGGCCTAGTAAGCATGACTTGGAAGCTTTGATGATGATGGGTTCGGTTGAGGTGGGTGCTGGGATTATAACTGGGAATAAGGAGCTTAATGATGGTGATGATGATGAGATTATGTACCTGCGAGCCAATTTCGAGAGAGTTTGTGGTTCGGCGAATTCGGAATCGTTTCATTTGATTGACCCAGATGAGAGTATTGGCCAGGAGCTTAGTATCTTCTTTTACCGTTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

239

Amino Acids

26.85

Weight (kDa)

8.21

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 76 - 236 1.1e-64 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22460 AT5G65340
fragaria_vesca FvH4_1g20130
malus_domestica MD15G1317100.v1.1
prunus_persica Prupe.6G194800_v2.0.a1
pyrus_communis pycom15g27970
rosa_chinensis RchiOBHm_Chr2g0112181
rosa_laevigata RLG00000017956
rosa_multiflora Rmu_sc0000360.1_g000039
rosa_roxburghii Rroxscaffold_2G00131710
rosa_rugosa Rorug02G0178900
rosa_samantha Rh2AG231100 Rh2BG244100 Rh2CG235500 Rh2DG238900
rosa_wichuraiana Rw2G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 609
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 3 cut(s) 20, 233, 246
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 425
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 2 cut(s) 176, 637
AcyI GRCGYC 2 cut(s) 82, 196
AfaI GTAC 4 cut(s) 72, 248, 446, 599
AfiI CCNNNNNNNGG 3 cut(s) 17, 243, 343
AgsI TTSAA 1 cut(s) 711
AjnI CCWGG 2 cut(s) 336, 681
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 6 cut(s) 204, 320, 414, 509, 568, 688
AluI AGCT 6 cut(s) 204, 320, 414, 509, 568, 688
Alw21I GWGCWC 1 cut(s) 416
Ama87I CYCGRG 4 cut(s) 10, 311, 377, 409
AoxI GGCC 2 cut(s) 485, 679
ApoI RAATTY 2 cut(s) 176, 637
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 1 cut(s) 648
Asp718I GGTACC 1 cut(s) 246
AspLEI GCGC 2 cut(s) 7, 41
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 5 cut(s) 37, 143, 220, 393, 590
AvaI CYCGRG 4 cut(s) 10, 311, 377, 409
BalI TGGCCA 1 cut(s) 681
BanI GGYRCC 3 cut(s) 20, 233, 246
BanII GRGCYC 1 cut(s) 416
BbsI GAAGAC 2 cut(s) 77, 375
Bbv12I GWGCWC 1 cut(s) 416
BccI CCATC 3 cut(s) 162, 514, 569
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 338, 683
BcnI CCSGG 1 cut(s) 393
BfaI CTAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 609
Bme1390I CCNGG 3 cut(s) 338, 393, 683
BmeT110I CYCGRG 4 cut(s) 10, 311, 377, 409
BmiI GGNNCC 3 cut(s) 22, 235, 248
BmrFI CCNGG 3 cut(s) 338, 393, 683
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 2 cut(s) 77, 375
BplI GAGNNNNNCTC 2 cut(s) 348, 380
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 2 cut(s) 82, 196
BsaJI CCNNGG 1 cut(s) 392
BsaWI WCCGGW 2 cut(s) 249, 430
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 243, 343
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 2 cut(s) 338, 683
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 2 cut(s) 111, 273
BseLI CCNNNNNNNGG 3 cut(s) 17, 243, 343
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 2 cut(s) 98, 299
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 2 cut(s) 487, 681
BshNI GGYRCC 3 cut(s) 20, 233, 246
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 4 cut(s) 10, 311, 377, 409
BsiSI CCGG 4 cut(s) 231, 250, 392, 431
BslI CCNNNNNNNGG 3 cut(s) 17, 243, 343
BsnI GGCC 2 cut(s) 487, 681
BsoBI CYCGRG 4 cut(s) 10, 311, 377, 409
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 487, 681
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 22, 235, 248
BspMI ACCTGC 1 cut(s) 609
BspT107I GGYRCC 3 cut(s) 20, 233, 246
BsrBI CCGCTC 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 2 cut(s) 82, 196
Bst2UI CCWGG 2 cut(s) 338, 683
Bst4CI ACNGT 4 cut(s) 52, 75, 334, 707
BstACI GRCGYC 2 cut(s) 82, 196
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 3 cut(s) 342, 365, 689
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 111, 273
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 7, 41
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 2 cut(s) 338, 683
BstSCI CCNGG 3 cut(s) 336, 391, 681
BstV2I GAAGAC 2 cut(s) 77, 375
BsuRI GGCC 2 cut(s) 487, 681
BtsCI GGATG 2 cut(s) 111, 273
BveI ACCTGC 1 cut(s) 609
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 2 cut(s) 7, 41
Cfr10I RCCGGY 1 cut(s) 230
CseI GACGC 2 cut(s) 71, 185
Csp6I GTAC 4 cut(s) 71, 247, 445, 598
CviAII CATG 3 cut(s) 31, 78, 497
CviQI GTAC 4 cut(s) 71, 247, 445, 598
DdeI CTNAG 3 cut(s) 342, 365, 689
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 679
Ecl136II GAGCTC 1 cut(s) 414
Eco147I AGGCCT 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 416
Eco53kI GAGCTC 1 cut(s) 414
Eco88I CYCGRG 4 cut(s) 10, 311, 377, 409
EcoICRI GAGCTC 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRI GAATTC 2 cut(s) 176, 637
EcoRII CCWGG 2 cut(s) 336, 681
EcoT38I GRGCYC 1 cut(s) 416
FaeI CATG 3 cut(s) 34, 81, 500
FaiI YATR 8 cut(s) 32, 79, 239, 443, 471, 498, 551, 596
FalI AAGNNNNNCTT 4 cut(s) 193, 225, 485, 517
FatI CATG 3 cut(s) 30, 77, 496
FblI GTMKAC 1 cut(s) 425
FokI GGATG 2 cut(s) 98, 260
FriOI GRGCYC 1 cut(s) 416
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 6, 40
GsaI CCCAGC 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 2 cut(s) 487, 681
HapII CCGG 4 cut(s) 231, 250, 392, 431
HgaI GACGC 2 cut(s) 71, 185
HhaI GCGC 2 cut(s) 7, 41
Hin1I GRCGYC 2 cut(s) 82, 196
Hin1II CATG 3 cut(s) 34, 81, 500
Hin6I GCGC 2 cut(s) 5, 39
HinP1I GCGC 2 cut(s) 5, 39
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 2 cut(s) 202, 507
HinfI GANTC 3 cut(s) 380, 427, 644
HpaII CCGG 4 cut(s) 231, 250, 392, 431
HphI GGTGA 5 cut(s) 37, 143, 220, 393, 590
Hpy166II GTNNAC 3 cut(s) 185, 426, 438
Hpy188I TCNGA 2 cut(s) 368, 643
Hpy188III TCNNGA 1 cut(s) 616
Hpy8I GTNNAC 3 cut(s) 185, 426, 438
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 142, 477
HpyCH4III ACNGT 4 cut(s) 52, 75, 334, 707
HpyCH4V TGCA 6 cut(s) 123, 129, 273, 352, 450, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 3 cut(s) 342, 365, 689
Hsp92I GRCGYC 2 cut(s) 82, 196
Hsp92II CATG 3 cut(s) 34, 81, 500
HspAI GCGC 2 cut(s) 5, 39
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 565, 685
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 43, 149
MalI GATC 1 cut(s) 147
MbiI CCGCTC 1 cut(s) 93
MboI GATC 1 cut(s) 145
MboII GAAGA 5 cut(s) 77, 152, 155, 375, 688
MhlI GDGCHC 1 cut(s) 416
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 4 cut(s) 176, 300, 610, 637
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 2 cut(s) 389, 421
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 5 cut(s) 119, 320, 350, 386, 526
Mox20I TGGCCA 1 cut(s) 681
MroXI GAANNNNTTC 1 cut(s) 648
MscI TGGCCA 1 cut(s) 681
MseI TTAA 2 cut(s) 477, 570
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 681
MspI CCGG 4 cut(s) 231, 250, 392, 431
MspR9I CCNGG 3 cut(s) 338, 393, 683
MvaI CCWGG 2 cut(s) 338, 683
MwoI GCNNNNNNNGC 1 cut(s) 493
NciI CCSGG 1 cut(s) 393
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 34, 81, 500
NlaIV GGNNCC 3 cut(s) 22, 235, 248
NmuCI GTSAC 2 cut(s) 43, 149
PaeR7I CTCGAG 3 cut(s) 311, 377, 409
PceI AGGCCT 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 1 cut(s) 644
PleI GAGTC 2 cut(s) 388, 421
PpsI GAGTC 2 cut(s) 388, 421
PsiI TTATAA 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 336, 681
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 336, 681
PspN4I GGNNCC 3 cut(s) 22, 235, 248
PspXI VCTCGAGB 3 cut(s) 311, 377, 409
RsaI GTAC 4 cut(s) 72, 248, 446, 599
RsaNI GTAC 4 cut(s) 71, 247, 445, 598
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 416
SalI GTCGAC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 477, 570
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 2 cut(s) 389, 421
ScrFI CCNGG 3 cut(s) 338, 393, 683
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 1 cut(s) 282
Sfr274I CTCGAG 3 cut(s) 311, 377, 409
SlaI CTCGAG 3 cut(s) 311, 377, 409
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 3 cut(s) 311, 377, 409
SmoI CTYRAG 3 cut(s) 311, 377, 409
Sse9I AATT 4 cut(s) 176, 300, 610, 637
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 489
SstI GAGCTC 1 cut(s) 416
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 3 cut(s) 336, 391, 681
TaaI ACNGT 4 cut(s) 52, 75, 334, 707
TaqI TCGA 7 cut(s) 54, 102, 312, 378, 410, 425, 615
TasI AATT 4 cut(s) 176, 300, 610, 637
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 2 cut(s) 477, 570
Tru9I TTAA 2 cut(s) 477, 570
TseFI GTSAC 2 cut(s) 43, 149
Tsp45I GTSAC 2 cut(s) 43, 149
TspDTI ATGAA 1 cut(s) 641
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 176, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 3 cut(s) 311, 377, 409
XmiI GTMKAC 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.