Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014993

Physical Location & Seq

Genomic Coordinates Reverse (-)

9562774 .. 9564850

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTCTAAAGGGTTTTGCTGAAGGAGGAATAGCTTCGATTGTTGCGGGTTGTTCGACCCACCCGCTTGATCTAATCAAGGTCCGAATGCAACTTCAAGGCGAATCAGCTCCGATTCAAACCAATCTCCGACCAGCTCTTGCTTTTCAGACTTCGACCACCGTCAACGCGCCTCCTCTACGTGTTGGTGTAATCGGAGTCGGATCTCGTTTAATAAGAGAAGAAGGCATGCGTGCTCTGTTTTCCGGCGTCTCCGCCACCGTTCTTCGTCAAACTCTGTATTCAACGACTCGTATGGGTTTATACGACATCATCAAAGGAGAATGGACCGACCCGGAAACAAAAACGATGCCTTTAATGAAAAAAATCGGTGCCGGAGCCATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGGTGAGGATGCAAGCCGATGGTCGTTTACCGTTGACTGATAGAAGAAACTACAAAAGCGTTTTAGACGCGATCACGCAAATGATTCGCGGTGAAGGCGTTACGTCGTTGTGGAGAGGATCGTCTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTGGCTTCGTATGATTCTGTTAAAGAGACGATTTTGGAGAAAGGGTTGTTGAAAGATGGGCTTGGGACTCATGTGTCGGCGAGTTTCGCGGCGGGGTTTGTTGCGAGCGTTGCGAGTAATCCTGTTGATGTGATTAAGACGAGAGTGATGAATATGAAGGTGGTGGCTGGAGTTGCTCCGCCGTATAAAGGAGCGGTTGATTGTGCTTTGAAAACGGTGAAAGCGGAAGGGATTATGTCTTTGTATAAAGGTTTTATCCCGACGGTTTCGAGACAAGCACCGTTCACGGTGGTTTTGTTTGTTACGCTTGAACAAGTTAAGAAGTTGTTCAAGGACTATGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006817 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008272 GO:0008509 GO:0008514 GO:0015075 GO:0015103 GO:0015116 GO:0015117 GO:0015131 GO:0015140 GO:0015141 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015556 GO:0015672 GO:0015698 GO:0015709 GO:0015711 GO:0015729 GO:0015740 GO:0015743 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071423 GO:0071702 GO:0072348 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:1901682 GO:1902356 GO:1902358 GO:1902600 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

313

Amino Acids

33.36

Weight (kDa)

9.74

Isoelectric Point (pI)

21.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 107	2.1e-17	Mitochondrial carrier protein
Mito_carr	PF00153	117 - 212	3.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	220 - 311	1.2e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22500
fragaria_vesca	FvH4_1g19840
malus_domestica	MD01G1038000.v1.1 MD15G1315000.v1.1
prunus_persica	Prupe.6G196900_v2.0.a1
pyrus_communis	pycom01g06600 pycom15g27820
rosa_chinensis	RchiOBHm_Chr2g0111661
rosa_laevigata	RLG00000017915
rosa_multiflora	Rmu_sc0034146.1_g000001
rosa_rugosa	Rorug02G0175200
rosa_samantha	Rh2AG228200 Rh2BG240400 Rh2CG231600 Rh2DG236200
rosa_wichuraiana	Rw2G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	667
AatII	GACGTC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	788
AccII	CGCG	4 cut(s)	170, 500, 519, 683
AclWI	GGATC	2 cut(s)	211, 556
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	2 cut(s)	249, 584
AfiI	CCNNNNNNNGG	2 cut(s)	408, 782
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	7 cut(s)	98, 119, 285, 646, 805, 905, 925
AjiI	CACGTC	1 cut(s)	424
AluBI	AGCT	3 cut(s)	35, 110, 137
AluI	AGCT	3 cut(s)	35, 110, 137
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	3 cut(s)	256, 614, 859
AlwI	GGATC	2 cut(s)	211, 556
Asp700I	GAANNNNTTC	2 cut(s)	34, 920
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	82, 327
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	3 cut(s)	445, 533, 823
AvaII	GGWCC	2 cut(s)	82, 327
BanI	GGYRCC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	4 cut(s)	389, 424, 443, 644
BceAI	ACGGC	2 cut(s)	389, 760
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	256, 614, 859
BisI	GCNGC	2 cut(s)	402, 684
BlsI	GCNGC	2 cut(s)	403, 685
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	82, 327
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	82, 327
BmiI	GGNNCC	3 cut(s)	373, 379, 400
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	339, 429
BoxI	GACNNNNGTC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	783
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	249, 584
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 420, 623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 782
Bse3DI	GCAATG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	408, 782
BseMI	GCAATG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	165
Bsh1236I	CGCG	4 cut(s)	170, 500, 519, 683
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	4 cut(s)	246, 335, 375, 387
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	408, 782
BsmAI	GTCTC	3 cut(s)	256, 614, 859
BsmBI	CGTCTC	2 cut(s)	256, 614
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	70, 203, 501, 548
BspFNI	CGCG	4 cut(s)	170, 500, 519, 683
BspLI	GGNNCC	3 cut(s)	373, 379, 400
BspPI	GGATC	2 cut(s)	211, 556
BspT107I	GGYRCC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	579
BssMI	GATC	4 cut(s)	70, 203, 501, 548
BssNI	GRCGYC	2 cut(s)	249, 584
Bst4CI	ACNGT	7 cut(s)	163, 262, 462, 811, 859, 876, 883
BstACI	GRCGYC	2 cut(s)	249, 584
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	230, 234, 444, 700
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	4 cut(s)	170, 500, 519, 683
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	73, 206, 504, 551
BstMAI	GTCTC	3 cut(s)	256, 614, 859
BstMBI	GATC	4 cut(s)	70, 203, 501, 548
BstMWI	GCNNNNNNNGC	6 cut(s)	398, 425, 525, 680, 704, 767
BstNSI	RCATGY	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	333
BstUI	CGCG	4 cut(s)	170, 500, 519, 683
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BtgZI	GCGATG	3 cut(s)	367, 443, 573
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	230, 234, 444, 700
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	82, 327
CseI	GACGC	2 cut(s)	238, 506
CviAII	CATG	2 cut(s)	229, 665
CviJI	RGCY	9 cut(s)	35, 110, 137, 380, 401, 446, 599, 655, 761
CviKI_1	RGCY	9 cut(s)	35, 110, 137, 380, 401, 446, 599, 655, 761
DpnI	GATC	4 cut(s)	72, 205, 503, 550
DpnII	GATC	4 cut(s)	70, 203, 501, 548
DrdI	GACNNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	667
EciI	GGCGGA	2 cut(s)	244, 762
Eco47I	GGWCC	2 cut(s)	82, 327
Eco57I	CTGAAG	1 cut(s)	42
Esp3I	CGTCTC	2 cut(s)	256, 614
FaeI	CATG	2 cut(s)	232, 668
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	2 cut(s)	228, 664
FauI	CCCGC	3 cut(s)	40, 72, 679
Fnu4HI	GCNGC	2 cut(s)	402, 684
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	2 cut(s)	402, 684
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	2 cut(s)	402, 684
GsuI	CTGGAG	1 cut(s)	783
HapII	CCGG	4 cut(s)	246, 335, 375, 387
HgaI	GACGC	2 cut(s)	238, 506
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	2 cut(s)	249, 584
Hin1II	CATG	2 cut(s)	232, 668
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	2 cut(s)	166, 465
HindII	GTYRAC	2 cut(s)	166, 465
HinfI	GANTC	8 cut(s)	104, 115, 198, 289, 412, 514, 608, 661
HpaII	CCGG	4 cut(s)	246, 335, 375, 387
HphI	GGTGA	3 cut(s)	445, 533, 823
Hpy166II	GTNNAC	4 cut(s)	166, 458, 465, 879
Hpy188I	TCNGA	7 cut(s)	86, 114, 131, 150, 197, 203, 398
Hpy188III	TCNNGA	2 cut(s)	853, 864
Hpy8I	GTNNAC	4 cut(s)	166, 458, 465, 879
Hpy99I	CGWCG	2 cut(s)	538, 859
HpyAV	CCTTC	5 cut(s)	17, 218, 518, 745, 815
HpyCH4III	ACNGT	7 cut(s)	163, 262, 462, 811, 859, 876, 883
HpyCH4IV	ACGT	4 cut(s)	181, 423, 533, 584
HpyCH4V	TGCA	2 cut(s)	91, 442
HpyF10VI	GCNNNNNNNGC	6 cut(s)	398, 425, 525, 680, 704, 767
HpySE526I	ACGT	4 cut(s)	181, 423, 533, 584
Hsp92I	GRCGYC	2 cut(s)	249, 584
Hsp92II	CATG	2 cut(s)	232, 668
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	70, 203, 501, 548
LmnI	GCTCC	6 cut(s)	115, 377, 389, 398, 775, 785
LpnPI	CCDG	8 cut(s)	147, 259, 348, 388, 400, 429, 729, 747
LweI	GCATC	2 cut(s)	339, 429
MaeII	ACGT	4 cut(s)	181, 423, 533, 584
MaeIII	GTNAC	3 cut(s)	529, 580, 895
MalI	GATC	4 cut(s)	72, 205, 503, 550
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	4 cut(s)	70, 203, 501, 548
MboII	GAAGA	3 cut(s)	233, 257, 486
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	238
MlyI	GAGTC	3 cut(s)	207, 283, 655
MmeI	TCCRAC	2 cut(s)	154, 181
MnlI	CCTC	5 cut(s)	20, 183, 186, 429, 539
MroXI	GAANNNNTTC	2 cut(s)	34, 920
MseI	TTAA	5 cut(s)	212, 356, 615, 729, 912
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	4 cut(s)	246, 335, 375, 387
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	93
MvnI	CGCG	4 cut(s)	170, 500, 519, 683
MwoI	GCNNNNNNNGC	6 cut(s)	398, 425, 525, 680, 704, 767
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	4 cut(s)	70, 203, 501, 548
NlaIII	CATG	2 cut(s)	232, 668
NlaIV	GGNNCC	3 cut(s)	373, 379, 400
NmuCI	GTSAC	1 cut(s)	580
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	2 cut(s)	402, 557
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	34, 920
PfeI	GAWTC	5 cut(s)	104, 115, 412, 514, 608
PkrI	GCNGC	2 cut(s)	403, 685
PleI	GAGTC	3 cut(s)	206, 283, 655
PpsI	GAGTC	3 cut(s)	206, 283, 655
Ppu21I	YACGTR	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	373, 379, 400
PspPI	GGNCC	2 cut(s)	82, 327
PsuI	RGATCY	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	5 cut(s)	212, 356, 615, 729, 912
SatI	GCNGC	2 cut(s)	402, 684
Sau3AI	GATC	4 cut(s)	70, 203, 501, 548
Sau96I	GGNCC	2 cut(s)	82, 327
SchI	GAGTC	3 cut(s)	207, 283, 655
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	339, 429
SinI	GGWCC	2 cut(s)	82, 327
SmiMI	CAYNNNNRTG	1 cut(s)	509
SphI	GCATGC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	7 cut(s)	163, 262, 462, 811, 859, 876, 883
TaiI	ACGT	4 cut(s)	184, 426, 536, 587
TaqI	TCGA	4 cut(s)	38, 56, 155, 863
TaqII	GACCGA	1 cut(s)	344
TauI	GCSGC	2 cut(s)	404, 686
TfiI	GAWTC	5 cut(s)	104, 115, 412, 514, 608
Tru1I	TTAA	5 cut(s)	212, 356, 615, 729, 912
Tru9I	TTAA	5 cut(s)	212, 356, 615, 729, 912
TseFI	GTSAC	1 cut(s)	580
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	3 cut(s)	374, 758, 764
VpaK11BI	GGWCC	2 cut(s)	82, 327
XceI	RCATGY	1 cut(s)	232
XmnI	GAANNNNTTC	2 cut(s)	34, 920
ZraI	GACGTC	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.