FvH4_1g19840

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
12025994 .. 12028170
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19840.t1

Sequence Viewer

Length: 966 bp
ATGGGTGTGAAAGGCTTCGTTGAGGGAGGCATAGCTTCCATCGTCGCCGGGTGTTCGACTCACCCCATGGACCTGATCAAGGTCCGAATGCAGCTCCAGGGTGAGACCCAGGTCCCCAAACCTGACCAAGCTCTTCGACCAGCGATGGCCTCTGCCGCTAGGGGAGCCGCTTCCTCTATCCATGTCCCTGTCCCCCCAACCCCGCCTCCGCGCGTGGGTCTGGTCACCGTGGGAGTCAAGCTCATTCAACAAGAGGGTGTTGCGGCTTTGTTCTCCGGCGTATCAGCCACCATGCTCCGGCAGTGCCTGTATTCCACTACCCGGATGGGGCTGTACGACATTCTCAAGAAGAAATGGACTGACCCGGAAACCGGGAACATGCCCCTGCAGCGCAAGATCGGCGCCGGACTCATCGCCGGAGCTATCGGCGCCACGGTGGGGAACCCGGCAGACGTGGCCATGGTGCGGATGCAGGCCGACGGGCGGCTCCCGGCGGCTGAGCGCCGGAACTACAAGAGCGTGGTGGACGCTATAACCCGCATGGCGAAGCAAGAAGGCGTCACGAGCCTGTGGCGCGGTTCGTCTATGACGGTGAACCGCGCCATGCTCGTGACGGCTTCGCAGCTGGCGTCGTACGACCAGTTCAAGGAGACGATTCTCGAGAAAGAGCTGATGCGAGACGGGCTCGGTACCCACATCACTGCGAGTTTCGCGGCGGGGTTCGTGGCGGCGGTGGCGTCGAACCCGGTGGACGTGATCAAGACAAGGGTGATGAACATGAAGGTGGAGCCGGGGGCGGCGCCGCCGTACAAGGGGGCGTTGGACTGCGCGGTCCAGACGGTGCGTTCGGAAGGGCCGATGGCGCTTTACAAAGGGTTTATACCCACGATTTCTAGGCAGGGGCCTTTCACGGTCGTGCTGTTTGTGACATTGGAGCAGGTAAGGAAGTTGCTCAAAGATTTCTGA

Protein Analysis

322

Amino Acids

34.24

Weight (kDa)

9.8

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 4 - 120 1.8e-16 Mitochondrial carrier protein
Mito_carr PF00153 128 - 222 4.5e-21 Mitochondrial carrier protein
Mito_carr PF00153 230 - 319 6.7e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22500
fragaria_vesca FvH4_1g19840
malus_domestica MD01G1038000.v1.1 MD15G1315000.v1.1
prunus_persica Prupe.6G196900_v2.0.a1
pyrus_communis pycom01g06600 pycom15g27820
rosa_chinensis RchiOBHm_Chr2g0111661
rosa_laevigata RLG00000017915
rosa_multiflora Rmu_sc0034146.1_g000001
rosa_rugosa Rorug02G0175200
rosa_samantha Rh2AG228200 Rh2BG240400 Rh2CG231600 Rh2DG236200
rosa_wichuraiana Rw2G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 928
Acc65I GGTACC 1 cut(s) 689
AccB1I GGYRCC 4 cut(s) 401, 428, 689, 799
AccII CGCG 6 cut(s) 211, 213, 576, 600, 713, 830
AcoI YGGCCR 1 cut(s) 456
AcyI GRCGYC 6 cut(s) 402, 429, 558, 629, 737, 800
AfaI GTAC 4 cut(s) 335, 635, 691, 809
AgsI TTSAA 2 cut(s) 248, 646
AjiI CACGTC 2 cut(s) 454, 754
AjnI CCWGG 2 cut(s) 96, 108
AleI CACNNNNGTG 1 cut(s) 914
AluBI AGCT 7 cut(s) 35, 94, 131, 241, 422, 625, 670
AluI AGCT 7 cut(s) 35, 94, 131, 241, 422, 625, 670
Alw26I GTCTC 3 cut(s) 98, 644, 672
AlwNI CAGNNNCTG 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 5 cut(s) 147, 456, 474, 854, 902
ApeKI GCWGC 3 cut(s) 91, 388, 622
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
Asp700I GAANNNNTTC 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 689
AspS9I GGNCC 6 cut(s) 70, 82, 112, 832, 854, 902
AsuC2I CCSGG 8 cut(s) 49, 322, 365, 373, 446, 491, 746, 792
AsuHPI GGTGA 5 cut(s) 53, 113, 217, 604, 781
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 4 cut(s) 70, 82, 112, 832
BalI TGGCCA 1 cut(s) 458
BanI GGYRCC 4 cut(s) 401, 428, 689, 799
BanII GRGCYC 1 cut(s) 687
BauI CACGAG 2 cut(s) 562, 608
BbvI GCAGC 3 cut(s) 103, 400, 634
BccI CCATC 4 cut(s) 47, 139, 319, 853
BceAI ACGGC 2 cut(s) 630, 790
BciT130I CCWGG 2 cut(s) 98, 110
BclI TGATCA 2 cut(s) 75, 756
BcnI CCSGG 8 cut(s) 49, 322, 365, 373, 446, 491, 746, 792
BcoDI GTCTC 3 cut(s) 98, 644, 672
BfaI CTAG 2 cut(s) 159, 894
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 5 cut(s) 405, 432, 505, 803, 866
BfuAI ACCTGC 1 cut(s) 928
BlpI GCTNAGC 1 cut(s) 498
Bme18I GGWCC 4 cut(s) 70, 82, 112, 832
BmeT110I CYCGRG 1 cut(s) 659
BmgBI CACGTC 2 cut(s) 454, 754
BmgT120I GGNCC 6 cut(s) 70, 82, 112, 832, 854, 902
BmsI GCATC 2 cut(s) 459, 663
BoxI GACNNNNGTC 1 cut(s) 110
BplI GAGNNNNNCTC 4 cut(s) 225, 257, 669, 701
BpmI CTGGAG 1 cut(s) 80
Bpu1102I GCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 8 cut(s) 49, 322, 365, 373, 446, 491, 746, 792
BsaHI GRCGYC 6 cut(s) 402, 429, 558, 629, 737, 800
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 7 cut(s) 66, 97, 108, 228, 432, 459, 791
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bse1I ACTGG 1 cut(s) 640
BseBI CCWGG 2 cut(s) 98, 110
BseDI CCNNGG 7 cut(s) 66, 97, 108, 228, 432, 459, 791
BseGI GGATG 2 cut(s) 330, 474
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 640
BseXI GCAGC 3 cut(s) 103, 400, 634
Bsh1236I CGCG 6 cut(s) 211, 213, 576, 600, 713, 830
Bsh1285I CGRYCG 1 cut(s) 915
BshFI GGCC 5 cut(s) 149, 458, 476, 856, 904
BshNI GGYRCC 4 cut(s) 401, 428, 689, 799
BsiEI CGRYCG 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 659
BsiWI CGTACG 1 cut(s) 633
BslFI GGGAC 3 cut(s) 98, 170, 176
BsmAI GTCTC 3 cut(s) 98, 644, 672
BsmBI CGTCTC 2 cut(s) 644, 672
BsmFI GGGAC 3 cut(s) 98, 170, 176
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 5 cut(s) 149, 458, 476, 856, 904
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 3 cut(s) 75, 396, 756
Bsp1720I GCTNAGC 1 cut(s) 498
Bsp19I CCATGG 2 cut(s) 66, 459
BspANI GGCC 5 cut(s) 149, 458, 476, 856, 904
BspCNI CTCAG 1 cut(s) 490
BspFNI CGCG 6 cut(s) 211, 213, 576, 600, 713, 830
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 928
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 4 cut(s) 401, 428, 689, 799
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 7 cut(s) 66, 97, 108, 228, 432, 459, 791
BssMI GATC 3 cut(s) 75, 396, 756
BssNI GRCGYC 6 cut(s) 402, 429, 558, 629, 737, 800
BssSI CACGAG 2 cut(s) 562, 608
BssT1I CCWWGG 2 cut(s) 66, 459
Bst2BI CACGAG 2 cut(s) 562, 608
Bst2UI CCWGG 2 cut(s) 98, 110
Bst4CI ACNGT 5 cut(s) 229, 436, 592, 841, 913
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 6 cut(s) 402, 429, 558, 629, 737, 800
BstC8I GCNNGC 2 cut(s) 474, 627
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 4 cut(s) 66, 228, 432, 459
BstEII GGTNACC 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 330, 474
BstFNI CGCG 6 cut(s) 211, 213, 576, 600, 713, 830
BstH2I RGCGCY 5 cut(s) 405, 432, 505, 803, 866
BstKTI GATC 3 cut(s) 78, 399, 759
BstMAI GTCTC 3 cut(s) 98, 644, 672
BstMBI GATC 3 cut(s) 75, 396, 756
BstMCI CGRYCG 1 cut(s) 915
BstNI CCWGG 2 cut(s) 98, 110
BstNSI RCATGY 1 cut(s) 382
BstPAI GACNNNNGTC 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 6 cut(s) 211, 213, 576, 600, 713, 830
BstV1I GCAGC 3 cut(s) 103, 400, 634
BsuRI GGCC 5 cut(s) 149, 458, 476, 856, 904
BtgI CCRYGG 4 cut(s) 66, 228, 432, 459
BtgZI GCGATG 2 cut(s) 158, 397
BtrI CACGTC 2 cut(s) 454, 754
BtsCI GGATG 2 cut(s) 330, 474
BtsI GCAGTG 2 cut(s) 308, 699
BtsIMutI CAGTG 2 cut(s) 308, 699
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 2 cut(s) 474, 627
CaiI CAGNNNCTG 1 cut(s) 307
Cfr13I GGNCC 6 cut(s) 70, 82, 112, 832, 854, 902
CseI GACGC 4 cut(s) 536, 547, 618, 726
Csp6I GTAC 4 cut(s) 334, 634, 690, 808
CviAII CATG 8 cut(s) 67, 182, 292, 379, 460, 541, 604, 778
CviQI GTAC 4 cut(s) 334, 634, 690, 808
DdeI CTNAG 1 cut(s) 498
DinI GGCGCC 3 cut(s) 403, 430, 801
DpnI GATC 3 cut(s) 77, 398, 758
DpnII GATC 3 cut(s) 75, 396, 756
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 66, 459
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 4 cut(s) 70, 82, 112, 832
Eco88I CYCGRG 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 112, 902
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 96, 108
EcoT14I CCWWGG 2 cut(s) 66, 459
EcoT38I GRGCYC 1 cut(s) 687
EgeI GGCGCC 3 cut(s) 403, 430, 801
EheI GGCGCC 3 cut(s) 403, 430, 801
ErhI CCWWGG 2 cut(s) 66, 459
Esp3I CGTCTC 2 cut(s) 644, 672
FaeI CATG 8 cut(s) 70, 185, 295, 382, 463, 544, 607, 781
FaqI GGGAC 3 cut(s) 98, 170, 176
FatI CATG 8 cut(s) 66, 181, 291, 378, 459, 540, 603, 777
FauI CCCGC 3 cut(s) 210, 545, 709
FbaI TGATCA 2 cut(s) 75, 756
FokI GGATG 2 cut(s) 337, 481
FriOI GRGCYC 1 cut(s) 687
FspBI CTAG 2 cut(s) 159, 894
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 5 cut(s) 405, 432, 505, 803, 866
HaeIII GGCC 5 cut(s) 149, 458, 476, 856, 904
HgaI GACGC 4 cut(s) 536, 547, 618, 726
Hin1I GRCGYC 6 cut(s) 402, 429, 558, 629, 737, 800
Hin1II CATG 8 cut(s) 70, 185, 295, 382, 463, 544, 607, 781
HinfI GANTC 4 cut(s) 58, 234, 408, 655
HphI GGTGA 5 cut(s) 53, 113, 217, 604, 781
Hpy166II GTNNAC 3 cut(s) 526, 595, 751
Hpy188I TCNGA 3 cut(s) 86, 850, 965
Hpy188III TCNNGA 7 cut(s) 346, 562, 610, 659, 661, 760, 835
Hpy8I GTNNAC 3 cut(s) 526, 595, 751
Hpy99I CGWCG 4 cut(s) 47, 482, 634, 742
HpyAV CCTTC 3 cut(s) 548, 775, 845
HpyCH4III ACNGT 5 cut(s) 229, 436, 592, 841, 913
HpyCH4IV ACGT 2 cut(s) 453, 753
HpyCH4V TGCA 3 cut(s) 91, 388, 472
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 2 cut(s) 453, 753
Hsp92I GRCGYC 6 cut(s) 402, 429, 558, 629, 737, 800
Hsp92II CATG 8 cut(s) 70, 185, 295, 382, 463, 544, 607, 781
KasI GGCGCC 3 cut(s) 401, 428, 799
KpnI GGTACC 1 cut(s) 693
Ksp22I TGATCA 2 cut(s) 75, 756
Kzo9I GATC 3 cut(s) 75, 396, 756
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 7 cut(s) 99, 164, 300, 419, 492, 787, 934
Lsp1109I GCAGC 3 cut(s) 103, 400, 634
LweI GCATC 2 cut(s) 459, 663
MaeI CTAG 2 cut(s) 159, 894
MaeII ACGT 2 cut(s) 453, 753
MaeIII GTNAC 4 cut(s) 223, 559, 610, 925
MalI GATC 3 cut(s) 77, 398, 758
MboI GATC 3 cut(s) 75, 396, 756
MboII GAAGA 2 cut(s) 125, 361
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 458
MluNI TGGCCA 1 cut(s) 458
Mly113I GGCGCC 3 cut(s) 402, 429, 800
MlyI GAGTC 3 cut(s) 52, 243, 402
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 6 cut(s) 16, 20, 160, 184, 216, 247
Mox20I TGGCCA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 458
MslI CAYNNNNRTG 3 cut(s) 608, 782, 914
Msp20I TGGCCA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 625
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 2 cut(s) 98, 110
MvnI CGCG 6 cut(s) 211, 213, 576, 600, 713, 830
NarI GGCGCC 3 cut(s) 402, 429, 800
NciI CCSGG 8 cut(s) 49, 322, 365, 373, 446, 491, 746, 792
NcoI CCATGG 2 cut(s) 66, 459
NdeII GATC 3 cut(s) 75, 396, 756
NlaIII CATG 8 cut(s) 70, 185, 295, 382, 463, 544, 607, 781
NmuCI GTSAC 4 cut(s) 223, 559, 610, 925
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 914
PaeR7I CTCGAG 1 cut(s) 659
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 626, 854
PctI GAATGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 655
Pfl23II CGTACG 1 cut(s) 633
PleI GAGTC 3 cut(s) 52, 242, 402
PluTI GGCGCC 3 cut(s) 405, 432, 803
PpsI GAGTC 3 cut(s) 52, 242, 402
PpuMI RGGWCCY 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 96, 108
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 96, 108
PspLI CGTACG 1 cut(s) 633
PspPI GGNCC 6 cut(s) 70, 82, 112, 832, 854, 902
PspPPI RGGWCCY 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 626, 658
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 4 cut(s) 335, 635, 691, 809
RsaNI GTAC 4 cut(s) 334, 634, 690, 808
RseI CAYNNNNRTG 3 cut(s) 608, 782, 914
SapI GCTCTTC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 75, 396, 756
Sau96I GGNCC 6 cut(s) 70, 82, 112, 832, 854, 902
SchI GAGTC 3 cut(s) 52, 243, 402
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 2 cut(s) 459, 663
SfcI CTRYAG 1 cut(s) 386
SfoI GGCGCC 3 cut(s) 403, 430, 801
Sfr274I CTCGAG 1 cut(s) 659
SinI GGWCC 4 cut(s) 70, 82, 112, 832
SlaI CTCGAG 1 cut(s) 659
SmiMI CAYNNNNRTG 3 cut(s) 608, 782, 914
SmlI CTYRAG 2 cut(s) 344, 659
SmoI CTYRAG 2 cut(s) 344, 659
SspDI GGCGCC 3 cut(s) 401, 428, 799
SspMI CTAG 2 cut(s) 159, 894
StyI CCWWGG 2 cut(s) 66, 459
TaaI ACNGT 5 cut(s) 229, 436, 592, 841, 913
TaiI ACGT 2 cut(s) 456, 756
TaqI TCGA 4 cut(s) 56, 136, 660, 740
TauI GCSGC 9 cut(s) 158, 170, 266, 487, 497, 716, 731, 800, 805
TfiI GAWTC 1 cut(s) 655
TscAI CASTG 2 cut(s) 308, 706
TseFI GTSAC 4 cut(s) 223, 559, 610, 925
TseI GCWGC 3 cut(s) 91, 388, 622
Tsp45I GTSAC 4 cut(s) 223, 559, 610, 925
TspDTI ATGAA 2 cut(s) 788, 794
TspRI CASTG 2 cut(s) 308, 706
VpaK11BI GGWCC 4 cut(s) 70, 82, 112, 832
XagI CCTNNNNNAGG 1 cut(s) 77
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 159, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.