Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014993

Physical Location & Seq

Genomic Coordinates Reverse (-)

7003001 .. 7003653

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGTGTCAAAGGTTTTGTTGAAGGAGGCATCGCTTCCATCATCGCCGGCTGCTTCACCCACCCTCTTGACCTCGTCAAGGTCCGAATGCAGCTCCAGGGCGAAACCCACGTCTCGAACCCGGCTGAGCAGACAGTGCGCCCGGCTTTTGCTTCCGTCCACACAGCCGCCAGACGCGGCTCCATCCCCCTCGCCCCACCACAGCCTCCTGCGGTCCGTGCCGGTCCAATCACCGTTGCGGTTCGCATAATTCAGCAAGAAGGCGTCTCCGCCATGTTTTCTGGCGTCTCCGCCACCATGCTCCGGCAGACTCTCTACTCCACAACCCGAATGGGCCTCTACGACATTCTCAAGCAAAAATGGACCGACCCGACAACCCGCAACATGCCACTCCCCCGCAAAATCACAGCAGGATTGATCGCCGGAGCGGTCGGCGCCGCCGTCGGAAACCCTGCCGACGTGGCCATGGTCCGAATGCAACGTGGTGGACGCCATCGGCCGCATGGCCAAGCAAGAAGGGGTGACGAGCCTTTGGCGCGGGTCGTCGCTGACGATCAACCGCGCGATGCTGGTGACAGCGTCGCAGCTGGCATCGTACGATCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006817 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008272 GO:0008509 GO:0008514 GO:0015075 GO:0015103 GO:0015116 GO:0015117 GO:0015131 GO:0015140 GO:0015141 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015556 GO:0015672 GO:0015698 GO:0015709 GO:0015711 GO:0015729 GO:0015740 GO:0015743 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071423 GO:0071702 GO:0072348 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:1901682 GO:1902356 GO:1902358 GO:1902600 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

203

Amino Acids

21.37

Weight (kDa)

10.76

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	4 - 122	1.9e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22500
fragaria_vesca	FvH4_1g19840
malus_domestica	MD01G1038000.v1.1 MD15G1315000.v1.1
prunus_persica	Prupe.6G196900_v2.0.a1
pyrus_communis	pycom01g06600 pycom15g27820
rosa_chinensis	RchiOBHm_Chr2g0111661
rosa_laevigata	RLG00000017915
rosa_multiflora	Rmu_sc0034146.1_g000001
rosa_rugosa	Rorug02G0175200
rosa_samantha	Rh2AG228200 Rh2BG240400 Rh2CG231600 Rh2DG236200
rosa_wichuraiana	Rw2G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	428
AccII	CGCG	4 cut(s)	177, 538, 562, 564
AcoI	YGGCCR	3 cut(s)	462, 497, 505
AcyI	GRCGYC	4 cut(s)	264, 285, 435, 490
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	2 cut(s)	79, 303
AgsI	TTSAA	1 cut(s)	23
AjiI	CACGTC	2 cut(s)	112, 460
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	94, 587
AluI	AGCT	2 cut(s)	94, 587
Alw26I	GTCTC	3 cut(s)	118, 271, 292
AoxI	GGCC	4 cut(s)	334, 462, 497, 505
ApeKI	GCWGC	3 cut(s)	51, 91, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AspLEI	GCGC	4 cut(s)	141, 437, 538, 564
AspS9I	GGNCC	6 cut(s)	82, 214, 224, 334, 363, 469
AsuC2I	CCSGG	2 cut(s)	122, 143
AsuHPI	GGTGA	4 cut(s)	49, 223, 533, 584
AvaII	GGWCC	5 cut(s)	82, 214, 224, 363, 469
BalI	TGGCCA	2 cut(s)	464, 507
BanI	GGYRCC	1 cut(s)	434
BbvI	GCAGC	3 cut(s)	38, 103, 596
BccI	CCATC	3 cut(s)	47, 191, 501
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	2 cut(s)	122, 143
BcoDI	GTCTC	3 cut(s)	118, 271, 292
BfoI	RGCGCY	1 cut(s)	438
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	7 cut(s)	52, 92, 168, 178, 438, 500, 585
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	7 cut(s)	53, 93, 169, 179, 439, 501, 586
Bme1390I	CCNGG	3 cut(s)	98, 122, 143
Bme18I	GGWCC	5 cut(s)	82, 214, 224, 363, 469
BmgBI	CACGTC	2 cut(s)	112, 460
BmgT120I	GGNCC	6 cut(s)	82, 214, 224, 334, 363, 469
BmiI	GGNNCC	2 cut(s)	181, 436
BmrFI	CCNGG	3 cut(s)	98, 122, 143
BmsI	GCATC	3 cut(s)	39, 556, 600
BpmI	CTGGAG	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	122, 143
BsaHI	GRCGYC	4 cut(s)	264, 285, 435, 490
BsaJI	CCNNGG	2 cut(s)	97, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 303
Bse118I	RCCGGY	2 cut(s)	47, 221
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	97, 465
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	79, 303
BseMII	CTCAG	1 cut(s)	117
BseX3I	CGGCCG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	38, 103, 596
Bsh1236I	CGCG	4 cut(s)	177, 538, 562, 564
Bsh1285I	CGRYCG	2 cut(s)	432, 500
BshFI	GGCC	4 cut(s)	336, 464, 499, 507
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	2 cut(s)	432, 500
BsiSI	CCGG	6 cut(s)	48, 122, 143, 222, 304, 423
BsiWI	CGTACG	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	79, 303
BsmAI	GTCTC	3 cut(s)	118, 271, 292
BsmBI	CGTCTC	3 cut(s)	118, 271, 292
BsmI	GAATGC	2 cut(s)	93, 480
BsnI	GGCC	4 cut(s)	336, 464, 499, 507
Bsp143I	GATC	3 cut(s)	417, 553, 599
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	4 cut(s)	336, 464, 499, 507
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	4 cut(s)	177, 538, 562, 564
BspLI	GGNNCC	2 cut(s)	181, 436
BspT107I	GGYRCC	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	428
BsrFI	RCCGGY	2 cut(s)	47, 221
BssAI	RCCGGY	2 cut(s)	47, 221
BssECI	CCNNGG	2 cut(s)	97, 465
BssMI	GATC	3 cut(s)	417, 553, 599
BssNI	GRCGYC	4 cut(s)	264, 285, 435, 490
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	136, 235
BstACI	GRCGYC	4 cut(s)	264, 285, 435, 490
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	49, 589
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	4 cut(s)	177, 538, 562, 564
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	4 cut(s)	141, 437, 538, 564
BstKTI	GATC	3 cut(s)	420, 556, 602
BstMAI	GTCTC	3 cut(s)	118, 271, 292
BstMBI	GATC	3 cut(s)	417, 553, 599
BstMCI	CGRYCG	2 cut(s)	432, 500
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 218, 434, 461, 535
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	3 cut(s)	96, 120, 141
BstUI	CGCG	4 cut(s)	177, 538, 562, 564
BstV1I	GCAGC	3 cut(s)	38, 103, 596
BstZI	CGGCCG	1 cut(s)	497
BsuRI	GGCC	4 cut(s)	336, 464, 499, 507
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	3 cut(s)	16, 28, 579
BtrI	CACGTC	2 cut(s)	112, 460
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	49, 589
CfoI	GCGC	4 cut(s)	141, 437, 538, 564
Cfr10I	RCCGGY	2 cut(s)	47, 221
Cfr13I	GGNCC	6 cut(s)	82, 214, 224, 334, 363, 469
CpoI	CGGWCCG	1 cut(s)	214
CseI	GACGC	5 cut(s)	183, 253, 274, 498, 568
Csp6I	GTAC	1 cut(s)	596
CspI	CGGWCCG	1 cut(s)	214
CviAII	CATG	5 cut(s)	274, 298, 385, 466, 503
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	1 cut(s)	126
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	3 cut(s)	419, 555, 601
DpnII	GATC	3 cut(s)	417, 553, 599
EaeI	YGGCCR	3 cut(s)	462, 497, 505
EagI	CGGCCG	1 cut(s)	497
EciI	GGCGGA	2 cut(s)	259, 280
EclXI	CGGCCG	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	5 cut(s)	82, 214, 224, 363, 469
Eco52I	CGGCCG	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	465
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	3 cut(s)	118, 271, 292
FaeI	CATG	5 cut(s)	277, 301, 388, 469, 506
FaiI	YATR	6 cut(s)	248, 275, 299, 386, 467, 504
FatI	CATG	5 cut(s)	273, 297, 384, 465, 502
FauI	CCCGC	3 cut(s)	386, 404, 531
Fnu4HI	GCNGC	7 cut(s)	52, 92, 168, 178, 438, 500, 585
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	7 cut(s)	52, 92, 168, 178, 438, 500, 585
GlaI	GCGC	4 cut(s)	140, 436, 537, 563
GluI	GCNGC	7 cut(s)	52, 92, 168, 178, 438, 500, 585
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	4 cut(s)	336, 464, 499, 507
HapII	CCGG	6 cut(s)	48, 122, 143, 222, 304, 423
HgaI	GACGC	5 cut(s)	183, 253, 274, 498, 568
HhaI	GCGC	4 cut(s)	141, 437, 538, 564
Hin1I	GRCGYC	4 cut(s)	264, 285, 435, 490
Hin1II	CATG	5 cut(s)	277, 301, 388, 469, 506
Hin6I	GCGC	4 cut(s)	139, 435, 536, 562
HinP1I	GCGC	4 cut(s)	139, 435, 536, 562
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	6 cut(s)	48, 122, 143, 222, 304, 423
HphI	GGTGA	4 cut(s)	49, 223, 533, 584
Hpy166II	GTNNAC	2 cut(s)	160, 488
Hpy188I	TCNGA	4 cut(s)	86, 446, 473, 604
Hpy188III	TCNNGA	2 cut(s)	68, 115
Hpy8I	GTNNAC	2 cut(s)	160, 488
Hpy99I	CGWCG	4 cut(s)	446, 461, 548, 584
HpyAV	CCTTC	3 cut(s)	17, 254, 510
HpyCH4III	ACNGT	2 cut(s)	136, 235
HpyCH4IV	ACGT	3 cut(s)	111, 459, 481
HpyCH4V	TGCA	2 cut(s)	91, 478
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 218, 434, 461, 535
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	3 cut(s)	111, 459, 481
Hsp92I	GRCGYC	4 cut(s)	264, 285, 435, 490
Hsp92II	CATG	5 cut(s)	277, 301, 388, 469, 506
HspAI	GCGC	4 cut(s)	139, 435, 536, 562
KasI	GGCGCC	1 cut(s)	434
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	417, 553, 599
LmnI	GCTCC	4 cut(s)	99, 185, 306, 425
Lsp1109I	GCAGC	3 cut(s)	38, 103, 596
LweI	GCATC	3 cut(s)	39, 556, 600
MaeII	ACGT	3 cut(s)	111, 459, 481
MaeIII	GTNAC	2 cut(s)	521, 572
MalI	GATC	3 cut(s)	419, 555, 601
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	3 cut(s)	417, 553, 599
MlsI	TGGCCA	2 cut(s)	464, 507
MluCI	AATT	1 cut(s)	249
MluNI	TGGCCA	2 cut(s)	464, 507
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	6 cut(s)	20, 75, 83, 200, 216, 347
Mox20I	TGGCCA	2 cut(s)	464, 507
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	2 cut(s)	464, 507
MseI	TTAA	1 cut(s)	607
Msp20I	TGGCCA	2 cut(s)	464, 507
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	6 cut(s)	48, 122, 143, 222, 304, 423
MspR9I	CCNGG	3 cut(s)	98, 122, 143
Mva1269I	GAATGC	2 cut(s)	93, 480
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	4 cut(s)	177, 538, 562, 564
MwoI	GCNNNNNNNGC	5 cut(s)	136, 218, 434, 461, 535
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	435
NciI	CCSGG	2 cut(s)	122, 143
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	417, 553, 599
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	5 cut(s)	277, 301, 388, 469, 506
NlaIV	GGNNCC	2 cut(s)	181, 436
NmuCI	GTSAC	2 cut(s)	521, 572
NspI	RCATGY	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	2 cut(s)	438, 549
PctI	GAATGC	2 cut(s)	93, 480
PdiI	GCCGGC	1 cut(s)	49
Pfl23II	CGTACG	1 cut(s)	595
PflFI	GACNNNGTC	2 cut(s)	74, 578
PkrI	GCNGC	7 cut(s)	53, 93, 169, 179, 439, 501, 586
PleI	GAGTC	1 cut(s)	304
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspLI	CGTACG	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	181, 436
PspPI	GGNCC	6 cut(s)	82, 214, 224, 334, 363, 469
PsyI	GACNNNGTC	2 cut(s)	74, 578
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
Rsr2I	CGGWCCG	1 cut(s)	214
RsrII	CGGWCCG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	607
SatI	GCNGC	7 cut(s)	52, 92, 168, 178, 438, 500, 585
Sau3AI	GATC	3 cut(s)	417, 553, 599
Sau96I	GGNCC	6 cut(s)	82, 214, 224, 334, 363, 469
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	3 cut(s)	98, 122, 143
SetI	ASST	8 cut(s)	16, 75, 84, 96, 114, 462, 484, 589
SfaNI	GCATC	3 cut(s)	39, 556, 600
SfoI	GGCGCC	1 cut(s)	436
SinI	GGWCC	5 cut(s)	82, 214, 224, 363, 469
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	249
SspDI	GGCGCC	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	96, 120, 141
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	136, 235
TaiI	ACGT	3 cut(s)	114, 462, 484
TaqI	TCGA	1 cut(s)	116
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	1 cut(s)	249
TauI	GCSGC	4 cut(s)	170, 180, 440, 502
Tru1I	TTAA	1 cut(s)	607
Tru9I	TTAA	1 cut(s)	607
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	521, 572
TseI	GCWGC	3 cut(s)	51, 91, 584
Tsp45I	GTSAC	2 cut(s)	521, 572
TspGWI	ACGGA	2 cut(s)	145, 206
TspRI	CASTG	1 cut(s)	141
Tth111I	GACNNNGTC	2 cut(s)	74, 578
VpaK11BI	GGWCC	5 cut(s)	82, 214, 224, 363, 469
XagI	CCTNNNNNAGG	1 cut(s)	77
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	2 cut(s)	328, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.