Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014993

Physical Location & Seq

Genomic Coordinates Forward (+)

23332318 .. 23333339

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGGTATCCCTGGATTGTCTGCAGACCAGTCCACCTGTTTAATCCTTTCCGTTTATTTCGTGTGAGTCTGCGGATAGCATATGTCTCAGAGGCCTTCCGTCCCCCACTCTTCCTCCATCGCCTTTCGCCTCCATTCCCATCTTTTCGTCTCCAATTTTTCTTTTTAATTATTTCTTTTCATTGGATTTTAGGAACCAGAAACAAAAACCACCCATTCATTATTCTTTTCTGTTTGTTTCCCGAGAAAATTCGACATGGTGCCGGCTGCTCCACCCACCCTCTTGACCTCGTCAAGGTCCGAATGCAGCTCCAGGGCGAAACCCACGCCCCGAAAACCCCTCCGCAGACAGTCCGCCCGGATTTTGCTGCCGTCCATACCGCCGCCCGACGCGGCTCCATCCCTCTCCCTCCATCACCGCCTCCTGCGGTCCGTGCGGGTCCTATCACCGTTGGGATTCGTATAATTCAGCAAGAAGGCGTCGCCGCCATGTTCTCCGGCATCTCCGCAACCATGCTCCGGCAAAGTCTCTACTCCACAACCCGAATGGGCCTCTACGACATTCTAAAGCAAAAATGGACAGACCCGACAACCCGAAACATGCCGCTCCCACGAAAAATCACAGCCGGGTTGATCGCTGGAGCCGTCGGCGCCGCCGTTGGAAACCCTGCTGACGTGGCCATGGTCCGAATGCAAGCCGACGGGAGGCTCCCGGCGGTGCAGCGTCGCAACTACAAAAGCGTGGTGGACGCCATCGTCCGCATGGTCAAGCAGGAAGGGGTGACGAGCCTTTGGCGCGGGTCGTCGCTGACGATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006817 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008272 GO:0008509 GO:0008514 GO:0015075 GO:0015103 GO:0015116 GO:0015117 GO:0015131 GO:0015140 GO:0015141 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015556 GO:0015672 GO:0015698 GO:0015709 GO:0015711 GO:0015729 GO:0015740 GO:0015743 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071423 GO:0071702 GO:0072348 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:1901682 GO:1902356 GO:1902358 GO:1902600 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

274

Amino Acids

30.58

Weight (kDa)

11.43

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	88 - 194	7.6e-13	Mitochondrial carrier protein
Mito_carr	PF00153	201 - 271	4.1e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22500
fragaria_vesca	FvH4_1g19840
malus_domestica	MD01G1038000.v1.1 MD15G1315000.v1.1
prunus_persica	Prupe.6G196900_v2.0.a1
pyrus_communis	pycom01g06600 pycom15g27820
rosa_chinensis	RchiOBHm_Chr2g0111661
rosa_laevigata	RLG00000017915
rosa_multiflora	Rmu_sc0034146.1_g000001
rosa_rugosa	Rorug02G0175200
rosa_samantha	Rh2AG228200 Rh2BG240400 Rh2CG231600 Rh2DG236200
rosa_wichuraiana	Rw2G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	755
AccB1I	GGYRCC	2 cut(s)	260, 650
AccBSI	CCGCTC	1 cut(s)	607
AccII	CGCG	2 cut(s)	393, 798
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	249
AcyI	GRCGYC	3 cut(s)	480, 651, 750
AfiI	CCNNNNNNNGG	3 cut(s)	295, 519, 705
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	11, 312
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	3 cut(s)	91, 155, 533
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	3 cut(s)	93, 550, 678
ApeKI	GCWGC	4 cut(s)	267, 307, 368, 721
ApoI	RAATTY	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	653, 798
AspS9I	GGNCC	5 cut(s)	298, 430, 440, 550, 685
AsuC2I	CCSGG	3 cut(s)	359, 628, 713
AsuHPI	GGTGA	3 cut(s)	408, 439, 793
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	4 cut(s)	298, 430, 440, 685
BalI	TGGCCA	1 cut(s)	680
BanI	GGYRCC	2 cut(s)	260, 650
BbvI	GCAGC	4 cut(s)	254, 319, 355, 733
BccI	CCATC	5 cut(s)	126, 148, 407, 421, 761
BceAI	ACGGC	3 cut(s)	356, 629, 641
BciT130I	CCWGG	2 cut(s)	13, 314
BciVI	GTATCC	1 cut(s)	18
BcnI	CCSGG	3 cut(s)	359, 628, 713
BcoDI	GTCTC	3 cut(s)	91, 155, 533
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	9 cut(s)	268, 308, 369, 384, 394, 486, 605, 654, 722
BlsI	GCNGC	9 cut(s)	269, 309, 370, 385, 395, 487, 606, 655, 723
Bme1390I	CCNGG	5 cut(s)	13, 314, 359, 628, 713
Bme18I	GGWCC	4 cut(s)	298, 430, 440, 685
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	5 cut(s)	298, 430, 440, 550, 685
BmiI	GGNNCC	7 cut(s)	196, 262, 397, 441, 643, 652, 710
BmrFI	CCNGG	5 cut(s)	13, 314, 359, 628, 713
BmsI	GCATC	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	296, 660
BpuMI	CCSGG	3 cut(s)	359, 628, 713
BsaHI	GRCGYC	3 cut(s)	480, 651, 750
BsaJI	CCNNGG	3 cut(s)	11, 313, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 519, 705
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	13, 314
BseDI	CCNNGG	3 cut(s)	11, 313, 681
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	295, 519, 705
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	4 cut(s)	254, 319, 355, 733
BsgI	GTGCAG	1 cut(s)	740
Bsh1236I	CGCG	2 cut(s)	393, 798
BshFI	GGCC	3 cut(s)	95, 552, 680
BshNI	GGYRCC	2 cut(s)	260, 650
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	6 cut(s)	264, 359, 498, 520, 627, 713
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	3 cut(s)	295, 519, 705
BsmAI	GTCTC	3 cut(s)	91, 155, 533
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	2 cut(s)	309, 696
BsnI	GGCC	3 cut(s)	95, 552, 680
BsoBI	CYCGRG	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	633, 813
Bsp19I	CCATGG	1 cut(s)	681
BspANI	GGCC	3 cut(s)	95, 552, 680
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	2 cut(s)	393, 798
BspLI	GGNNCC	7 cut(s)	196, 262, 397, 441, 643, 652, 710
BspMAI	CTGCAG	1 cut(s)	26
BspT107I	GGYRCC	2 cut(s)	260, 650
BsrBI	CCGCTC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	11, 313, 681
BssMI	GATC	2 cut(s)	633, 813
BssNI	GRCGYC	3 cut(s)	480, 651, 750
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	2 cut(s)	13, 314
Bst4CI	ACNGT	2 cut(s)	352, 451
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	3 cut(s)	480, 651, 750
BstC8I	GCNNGC	2 cut(s)	265, 696
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	681
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	399
BstFNI	CGCG	2 cut(s)	393, 798
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	653, 798
BstKTI	GATC	2 cut(s)	636, 816
BstMAI	GTCTC	3 cut(s)	91, 155, 533
BstMBI	GATC	2 cut(s)	633, 813
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 650, 677, 795
BstNI	CCWGG	2 cut(s)	13, 314
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	5 cut(s)	11, 312, 357, 626, 711
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	393, 798
BstV1I	GCAGC	4 cut(s)	254, 319, 355, 733
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	95, 552, 680
BtgI	CCRYGG	1 cut(s)	681
BtgZI	GCGATG	1 cut(s)	104
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	265, 696
CfoI	GCGC	2 cut(s)	653, 798
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	5 cut(s)	298, 430, 440, 550, 685
CpoI	CGGWCCG	1 cut(s)	430
CseI	GACGC	4 cut(s)	399, 469, 713, 758
CspI	CGGWCCG	1 cut(s)	430
CviAII	CATG	6 cut(s)	257, 490, 514, 601, 682, 763
DdeI	CTNAG	1 cut(s)	88
DinI	GGCGCC	1 cut(s)	652
DpnI	GATC	2 cut(s)	635, 815
DpnII	GATC	2 cut(s)	633, 813
DrdI	GACNNNNNNGTC	1 cut(s)	755
DseDI	GACNNNNNNGTC	1 cut(s)	755
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	681
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	4 cut(s)	298, 430, 440, 685
Eco88I	CYCGRG	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	11, 312
EcoT14I	CCWWGG	1 cut(s)	681
EgeI	GGCGCC	1 cut(s)	652
EheI	GGCGCC	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	6 cut(s)	260, 493, 517, 604, 685, 766
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	6 cut(s)	256, 489, 513, 600, 681, 762
FauI	CCCGC	2 cut(s)	430, 791
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	9 cut(s)	268, 308, 369, 384, 394, 486, 605, 654, 722
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	9 cut(s)	268, 308, 369, 384, 394, 486, 605, 654, 722
GlaI	GCGC	2 cut(s)	652, 797
GluI	GCNGC	9 cut(s)	268, 308, 369, 384, 394, 486, 605, 654, 722
GsuI	CTGGAG	2 cut(s)	296, 660
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	95, 552, 680
HapII	CCGG	6 cut(s)	264, 359, 498, 520, 627, 713
HgaI	GACGC	4 cut(s)	399, 469, 713, 758
HhaI	GCGC	2 cut(s)	653, 798
Hin1I	GRCGYC	3 cut(s)	480, 651, 750
Hin1II	CATG	6 cut(s)	260, 493, 517, 604, 685, 766
Hin6I	GCGC	2 cut(s)	651, 796
HinP1I	GCGC	2 cut(s)	651, 796
HinfI	GANTC	2 cut(s)	67, 457
HpaII	CCGG	6 cut(s)	264, 359, 498, 520, 627, 713
HphI	GGTGA	3 cut(s)	408, 439, 793
Hpy166II	GTNNAC	2 cut(s)	34, 748
Hpy188I	TCNGA	3 cut(s)	91, 302, 689
Hpy188III	TCNNGA	2 cut(s)	242, 284
Hpy8I	GTNNAC	2 cut(s)	34, 748
Hpy99I	CGWCG	6 cut(s)	393, 485, 650, 704, 729, 808
HpyAV	CCTTC	3 cut(s)	106, 470, 770
HpyCH4III	ACNGT	2 cut(s)	352, 451
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	4 cut(s)	24, 307, 694, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 650, 677, 795
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	675
Hsp92I	GRCGYC	3 cut(s)	480, 651, 750
Hsp92II	CATG	6 cut(s)	260, 493, 517, 604, 685, 766
HspAI	GCGC	2 cut(s)	651, 796
KasI	GGCGCC	1 cut(s)	650
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	633, 813
LmnI	GCTCC	7 cut(s)	275, 315, 401, 522, 612, 641, 714
Lsp1109I	GCAGC	4 cut(s)	254, 319, 355, 733
LweI	GCATC	1 cut(s)	510
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	2 cut(s)	635, 815
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	2 cut(s)	633, 813
MboII	GAAGA	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	4 cut(s)	155, 168, 249, 465
MluNI	TGGCCA	1 cut(s)	680
Mly113I	GGCGCC	1 cut(s)	651
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	640
Mox20I	TGGCCA	1 cut(s)	680
MroNI	GCCGGC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	2 cut(s)	42, 167
Msp20I	TGGCCA	1 cut(s)	680
MspI	CCGG	6 cut(s)	264, 359, 498, 520, 627, 713
MspR9I	CCNGG	5 cut(s)	13, 314, 359, 628, 713
Mva1269I	GAATGC	2 cut(s)	309, 696
MvaI	CCWGG	2 cut(s)	13, 314
MvnI	CGCG	2 cut(s)	393, 798
MwoI	GCNNNNNNNGC	4 cut(s)	434, 650, 677, 795
NaeI	GCCGGC	1 cut(s)	265
NarI	GGCGCC	1 cut(s)	651
NciI	CCSGG	3 cut(s)	359, 628, 713
NcoI	CCATGG	1 cut(s)	681
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	2 cut(s)	633, 813
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	6 cut(s)	260, 493, 517, 604, 685, 766
NlaIV	GGNNCC	7 cut(s)	196, 262, 397, 441, 643, 652, 710
NmuCI	GTSAC	1 cut(s)	781
NspI	RCATGY	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	3 cut(s)	642, 654, 809
PctI	GAATGC	2 cut(s)	309, 696
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	457
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	9 cut(s)	269, 309, 370, 385, 395, 487, 606, 655, 723
PleI	GAGTC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	11, 312
PspGI	CCWGG	2 cut(s)	11, 312
PspN4I	GGNNCC	7 cut(s)	196, 262, 397, 441, 643, 652, 710
PspPI	GGNCC	5 cut(s)	298, 430, 440, 550, 685
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	290
Rsr2I	CGGWCCG	1 cut(s)	430
RsrII	CGGWCCG	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	42, 167
SatI	GCNGC	9 cut(s)	268, 308, 369, 384, 394, 486, 605, 654, 722
Sau3AI	GATC	2 cut(s)	633, 813
Sau96I	GGNCC	5 cut(s)	298, 430, 440, 550, 685
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	5 cut(s)	13, 314, 359, 628, 713
SetI	ASST	6 cut(s)	8, 39, 291, 300, 312, 678
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	22
SfoI	GGCGCC	1 cut(s)	652
SinI	GGWCC	4 cut(s)	298, 430, 440, 685
Sse9I	AATT	4 cut(s)	155, 168, 249, 465
SseBI	AGGCCT	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	650
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	5 cut(s)	11, 312, 357, 626, 711
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	352, 451
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	155, 168, 249, 465
TauI	GCSGC	5 cut(s)	386, 396, 488, 607, 656
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	42, 167
Tru9I	TTAA	2 cut(s)	42, 167
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	4 cut(s)	267, 307, 368, 721
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	2 cut(s)	170, 208
TspGWI	ACGGA	3 cut(s)	41, 89, 422
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	4 cut(s)	298, 430, 440, 685
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	544, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.