Rh2CG231600

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
23551792 .. 23554688
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG231600.1

Sequence Viewer

Length: 978 bp
ATGGGTGTGAAAGGTTTTGTTGAAGGAGGCATAGCTTCCATCGTTGCCGGGTGTTCGACTCACCCCTTGGACCTGATCAAGGTCCGAATGCAGCTCCAGGGTGAGACTCAGGTGCCGAAACCTGAACCAGCCGCGGCTCAAGCTCTTCGACCAGCGATGGCTGCGGCCGCTCGGGGAGGCTCTTCCTCCATTCAGGTCCCTGTCCCTCCGGCGCCGGCCCCGCGCGTGGGTCCAATTGCCGTCGGAGTCAGAATCATTCAGCAAGAGGGTGTTGCTGCCATGTTCTCTGGCGTATCCGCCACCATGCTCCGCCAGTGCTTGTACTCCACCACCCGGATGGGCTTGTACGACATTCTCAAGAAGAAATGGACCGACCCGGAATCCGGCAACATGCCGCTCCAGCGAAAAATCGGTGCCGGGCTGATCGCCGGAGCCATCGGTGCGTCGGTCGGAAATCCGGCCGACGTGGCCATGGTGCGGATGCAGGCAGACGGCCGTCTCCCGGCCGCCCAGCGCCGCAACTACAAAAGCGTGGTGGACGCTATAACCTGTATGGCGAAACAAGAAGGTGTCACGAGCCTGTGGCGCGGTTCGTCTCTCACCGTGAACCGTGCCATGCTCGTGACAGCTTCCCAGTTGGCTTCTTACGACCAGATCAAGGAAACAATTCTCGATAAAGGGCTGATGCGAGACGGGCTCGGTACCCACATAACCGCGAGCTTCGCGGCGGGGTTTGTGGCGGCGGTGGCGTCGAACCCGGTGGACGTGATCAAGACCCGGGTGATGAACATGAAGGTGGAGCCAGGGGCGGAGCCACCGTACAAGGGGGCGCTGGACTGCGCGGTGAAAACGGTGCGTTCGGAAGGGCCGATGGCGCTTTACAAAGGGTTTATACCTACGATTTCGAGGCAGGGGCCTTTCACTGTCGTGCTGTTTGTGACATTGGAGCAGGTAAGGAAGTTGCTCAAAGATTTCTGA

Protein Analysis

325

Amino Acids

34.32

Weight (kDa)

9.81

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 4 - 124 1.4e-15 Mitochondrial carrier protein
Mito_carr PF00153 132 - 226 1.5e-19 Mitochondrial carrier protein
Mito_carr PF00153 234 - 323 3.3e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22500
fragaria_vesca FvH4_1g19840
malus_domestica MD01G1038000.v1.1 MD15G1315000.v1.1
prunus_persica Prupe.6G196900_v2.0.a1
pyrus_communis pycom01g06600 pycom15g27820
rosa_chinensis RchiOBHm_Chr2g0111661
rosa_laevigata RLG00000017915
rosa_multiflora Rmu_sc0034146.1_g000001
rosa_rugosa Rorug02G0175200
rosa_samantha Rh2AG228200 Rh2BG240400 Rh2CG231600 Rh2DG236200
rosa_wichuraiana Rw2G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 940
Acc65I GGTACC 1 cut(s) 701
AccB1I GGYRCC 4 cut(s) 112, 211, 413, 701
AccBSI CCGCTC 2 cut(s) 170, 397
AccII CGCG 7 cut(s) 134, 223, 225, 588, 716, 725, 842
AcoI YGGCCR 5 cut(s) 165, 459, 468, 493, 504
AcyI GRCGYC 2 cut(s) 212, 749
AfaI GTAC 4 cut(s) 323, 347, 703, 821
AfiI CCNNNNNNNGG 9 cut(s) 79, 226, 227, 333, 383, 477, 502, 658, 824
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 2 cut(s) 466, 766
AjnI CCWGG 2 cut(s) 96, 802
AleI CACNNNNGTG 1 cut(s) 926
AluBI AGCT 5 cut(s) 35, 94, 143, 629, 720
AluI AGCT 5 cut(s) 35, 94, 143, 629, 720
Alw26I GTCTC 4 cut(s) 98, 503, 600, 684
Ama87I CYCGRG 2 cut(s) 171, 777
AoxI GGCC 8 cut(s) 165, 216, 459, 468, 493, 504, 866, 914
ApeKI GCWGC 3 cut(s) 91, 161, 275
Asp700I GAANNNNTTC 1 cut(s) 666
Asp718I GGTACC 1 cut(s) 701
AspLEI GCGC 7 cut(s) 214, 225, 516, 588, 832, 842, 877
AspS9I GGNCC 8 cut(s) 70, 82, 196, 217, 230, 369, 866, 914
AsuC2I CCSGG 8 cut(s) 49, 334, 377, 418, 503, 758, 778, 779
AsuHPI GGTGA 5 cut(s) 53, 113, 592, 793, 856
AvaI CYCGRG 2 cut(s) 171, 777
AvaII GGWCC 5 cut(s) 70, 82, 196, 230, 369
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 4 cut(s) 112, 211, 413, 701
BanII GRGCYC 1 cut(s) 699
BauI CACGAG 2 cut(s) 574, 620
BbvI GCAGC 3 cut(s) 103, 148, 262
BccI CCATC 5 cut(s) 47, 151, 331, 443, 865
BceAI ACGGC 3 cut(s) 224, 480, 508
BciT130I CCWGG 2 cut(s) 98, 804
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 2 cut(s) 75, 768
BcnI CCSGG 8 cut(s) 49, 334, 377, 418, 503, 758, 778, 779
BcoDI GTCTC 4 cut(s) 98, 503, 600, 684
BfoI RGCGCY 4 cut(s) 215, 517, 833, 878
BfuAI ACCTGC 1 cut(s) 940
BfuI GTATCC 1 cut(s) 304
BglI GCCNNNNNGGC 1 cut(s) 467
Bme18I GGWCC 5 cut(s) 70, 82, 196, 230, 369
BmeT110I CYCGRG 2 cut(s) 171, 777
BmgBI CACGTC 2 cut(s) 466, 766
BmgT120I GGNCC 8 cut(s) 70, 82, 196, 217, 230, 369, 866, 914
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 2 cut(s) 471, 675
BmuI ACTGGG 1 cut(s) 628
BoxI GACNNNNGTC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 681, 713
BpmI CTGGAG 2 cut(s) 80, 383
BpuEI CTTGAG 2 cut(s) 123, 341
BpuMI CCSGG 8 cut(s) 49, 334, 377, 418, 503, 758, 778, 779
BsaHI GRCGYC 2 cut(s) 212, 749
BsaJI CCNNGG 6 cut(s) 66, 97, 132, 471, 777, 803
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 9 cut(s) 79, 226, 227, 333, 383, 477, 502, 658, 824
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 313, 634
BseBI CCWGG 2 cut(s) 98, 804
BseDI CCNNGG 6 cut(s) 66, 97, 132, 471, 777, 803
BseGI GGATG 2 cut(s) 342, 486
BseLI CCNNNNNNNGG 9 cut(s) 79, 226, 227, 333, 383, 477, 502, 658, 824
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 313, 634
BseX3I CGGCCG 4 cut(s) 165, 459, 493, 504
BseXI GCAGC 3 cut(s) 103, 148, 262
BseYI CCCAGC 1 cut(s) 510
Bsh1236I CGCG 7 cut(s) 134, 223, 225, 588, 716, 725, 842
Bsh1285I CGRYCG 5 cut(s) 168, 450, 462, 496, 507
BshFI GGCC 8 cut(s) 167, 218, 461, 470, 495, 506, 868, 916
BshNI GGYRCC 4 cut(s) 112, 211, 413, 701
BsiEI CGRYCG 5 cut(s) 168, 450, 462, 496, 507
BsiHKCI CYCGRG 2 cut(s) 171, 777
BslFI GGGAC 2 cut(s) 182, 188
BslI CCNNNNNNNGG 9 cut(s) 79, 226, 227, 333, 383, 477, 502, 658, 824
BsmAI GTCTC 4 cut(s) 98, 503, 600, 684
BsmBI CGTCTC 3 cut(s) 503, 600, 684
BsmFI GGGAC 2 cut(s) 182, 188
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 8 cut(s) 167, 218, 461, 470, 495, 506, 868, 916
BsoBI CYCGRG 2 cut(s) 171, 777
Bsp1286I GDGCHC 1 cut(s) 699
Bsp143I GATC 4 cut(s) 75, 423, 654, 768
Bsp19I CCATGG 1 cut(s) 471
BspANI GGCC 8 cut(s) 167, 218, 461, 470, 495, 506, 868, 916
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 7 cut(s) 134, 223, 225, 588, 716, 725, 842
BspMI ACCTGC 1 cut(s) 940
BspQI GCTCTTC 2 cut(s) 150, 187
BspT107I GGYRCC 4 cut(s) 112, 211, 413, 701
BsrBI CCGCTC 2 cut(s) 170, 397
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 2 cut(s) 313, 634
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 6 cut(s) 66, 97, 132, 471, 777, 803
BssMI GATC 4 cut(s) 75, 423, 654, 768
BssNI GRCGYC 2 cut(s) 212, 749
BssSI CACGAG 2 cut(s) 574, 620
BssT1I CCWWGG 2 cut(s) 66, 471
Bst2BI CACGAG 2 cut(s) 574, 620
Bst2UI CCWGG 2 cut(s) 98, 804
Bst4CI ACNGT 5 cut(s) 604, 611, 819, 853, 925
Bst6I CTCTTC 2 cut(s) 150, 187
BstACI GRCGYC 2 cut(s) 212, 749
BstC8I GCNNGC 3 cut(s) 216, 486, 718
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 2 cut(s) 132, 471
BstENI CCTNNNNNAGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 342, 486
BstFNI CGCG 7 cut(s) 134, 223, 225, 588, 716, 725, 842
BstH2I RGCGCY 4 cut(s) 215, 517, 833, 878
BstHHI GCGC 7 cut(s) 214, 225, 516, 588, 832, 842, 877
BstKTI GATC 4 cut(s) 78, 426, 657, 771
BstMAI GTCTC 4 cut(s) 98, 503, 600, 684
BstMBI GATC 4 cut(s) 75, 423, 654, 768
BstMCI CGRYCG 5 cut(s) 168, 450, 462, 496, 507
BstNI CCWGG 2 cut(s) 98, 804
BstNSI RCATGY 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 495
BstUI CGCG 7 cut(s) 134, 223, 225, 588, 716, 725, 842
BstV1I GCAGC 3 cut(s) 103, 148, 262
BstXI CCANNNNNNTGG 1 cut(s) 337
BstZI CGGCCG 4 cut(s) 165, 459, 493, 504
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 8 cut(s) 167, 218, 461, 470, 495, 506, 868, 916
BtgI CCRYGG 2 cut(s) 132, 471
BtgZI GCGATG 1 cut(s) 170
BtrI CACGTC 2 cut(s) 466, 766
BtsCI GGATG 2 cut(s) 342, 486
BtsIMutI CAGTG 2 cut(s) 320, 921
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 3 cut(s) 216, 486, 718
CciNI GCGGCCGC 1 cut(s) 165
CfoI GCGC 7 cut(s) 214, 225, 516, 588, 832, 842, 877
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 8 cut(s) 70, 82, 196, 217, 230, 369, 866, 914
Cfr42I CCGCGG 1 cut(s) 135
Cfr9I CCCGGG 1 cut(s) 777
CseI GACGC 3 cut(s) 432, 548, 738
Csp6I GTAC 4 cut(s) 322, 346, 702, 820
CviAII CATG 6 cut(s) 280, 304, 391, 472, 616, 790
CviQI GTAC 4 cut(s) 322, 346, 702, 820
DdeI CTNAG 1 cut(s) 108
DinI GGCGCC 1 cut(s) 213
DpnI GATC 4 cut(s) 77, 425, 656, 770
DpnII GATC 4 cut(s) 75, 423, 654, 768
EaeI YGGCCR 5 cut(s) 165, 459, 468, 493, 504
EagI CGGCCG 4 cut(s) 165, 459, 493, 504
Eam1104I CTCTTC 2 cut(s) 150, 187
EarI CTCTTC 2 cut(s) 150, 187
EciI GGCGGA 3 cut(s) 286, 299, 824
EclXI CGGCCG 4 cut(s) 165, 459, 493, 504
Eco130I CCWWGG 2 cut(s) 66, 471
Eco24I GRGCYC 1 cut(s) 699
Eco47I GGWCC 5 cut(s) 70, 82, 196, 230, 369
Eco52I CGGCCG 4 cut(s) 165, 459, 493, 504
Eco88I CYCGRG 2 cut(s) 171, 777
EcoNI CCTNNNNNAGG 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 196, 914
EcoRII CCWGG 2 cut(s) 96, 802
EcoT14I CCWWGG 2 cut(s) 66, 471
EcoT38I GRGCYC 1 cut(s) 699
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 66, 471
Esp3I CGTCTC 3 cut(s) 503, 600, 684
FaeI CATG 6 cut(s) 283, 307, 394, 475, 619, 793
FaqI GGGAC 2 cut(s) 182, 188
FatI CATG 6 cut(s) 279, 303, 390, 471, 615, 789
FauI CCCGC 2 cut(s) 228, 721
FbaI TGATCA 2 cut(s) 75, 768
FokI GGATG 2 cut(s) 349, 493
FriOI GRGCYC 1 cut(s) 699
GlaI GCGC 7 cut(s) 213, 224, 515, 587, 831, 841, 876
GsaI CCCAGC 1 cut(s) 514
GsuI CTGGAG 2 cut(s) 80, 383
HaeII RGCGCY 4 cut(s) 215, 517, 833, 878
HaeIII GGCC 8 cut(s) 167, 218, 461, 470, 495, 506, 868, 916
HgaI GACGC 3 cut(s) 432, 548, 738
HhaI GCGC 7 cut(s) 214, 225, 516, 588, 832, 842, 877
Hin1I GRCGYC 2 cut(s) 212, 749
Hin1II CATG 6 cut(s) 283, 307, 394, 475, 619, 793
Hin6I GCGC 7 cut(s) 212, 223, 514, 586, 830, 840, 875
HinP1I GCGC 7 cut(s) 212, 223, 514, 586, 830, 840, 875
HinfI GANTC 5 cut(s) 58, 106, 246, 252, 380
HphI GGTGA 5 cut(s) 53, 113, 592, 793, 856
Hpy166II GTNNAC 3 cut(s) 538, 607, 763
Hpy188I TCNGA 6 cut(s) 86, 245, 251, 452, 862, 977
Hpy188III TCNNGA 5 cut(s) 358, 574, 622, 671, 772
Hpy8I GTNNAC 3 cut(s) 538, 607, 763
Hpy99I CGWCG 4 cut(s) 245, 448, 467, 754
HpyAV CCTTC 4 cut(s) 17, 560, 787, 857
HpyCH4III ACNGT 5 cut(s) 604, 611, 819, 853, 925
HpyCH4IV ACGT 2 cut(s) 465, 765
HpyCH4V TGCA 2 cut(s) 91, 484
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 465, 765
Hsp92I GRCGYC 2 cut(s) 212, 749
Hsp92II CATG 6 cut(s) 283, 307, 394, 475, 619, 793
HspAI GCGC 7 cut(s) 212, 223, 514, 586, 830, 840, 875
KasI GGCGCC 1 cut(s) 211
KpnI GGTACC 1 cut(s) 705
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Ksp22I TGATCA 2 cut(s) 75, 768
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 4 cut(s) 75, 423, 654, 768
LguI GCTCTTC 2 cut(s) 150, 187
LmnI GCTCC 7 cut(s) 99, 312, 402, 431, 799, 811, 946
Lsp1109I GCAGC 3 cut(s) 103, 148, 262
LweI GCATC 2 cut(s) 471, 675
MaeII ACGT 2 cut(s) 465, 765
MaeIII GTNAC 3 cut(s) 571, 622, 937
MalI GATC 4 cut(s) 77, 425, 656, 770
MbiI CCGCTC 2 cut(s) 170, 397
MboI GATC 4 cut(s) 75, 423, 654, 768
MboII GAAGA 3 cut(s) 137, 174, 373
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 699
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 2 cut(s) 234, 666
MluNI TGGCCA 1 cut(s) 470
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 3 cut(s) 52, 100, 255
MmeI TCCRAC 2 cut(s) 223, 430
MnlI CCTC 6 cut(s) 20, 170, 196, 216, 259, 900
Mox20I TGGCCA 1 cut(s) 470
MroNI GCCGGC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 470
MslI CAYNNNNRTG 4 cut(s) 335, 620, 794, 926
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 134
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 2 cut(s) 98, 804
MvnI CGCG 7 cut(s) 134, 223, 225, 588, 716, 725, 842
NaeI GCCGGC 1 cut(s) 216
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 8 cut(s) 49, 334, 377, 418, 503, 758, 778, 779
NcoI CCATGG 1 cut(s) 471
NdeII GATC 4 cut(s) 75, 423, 654, 768
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 6 cut(s) 283, 307, 394, 475, 619, 793
NmuCI GTSAC 3 cut(s) 571, 622, 937
NotI GCGGCCGC 1 cut(s) 165
NspI RCATGY 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 926
PciSI GCTCTTC 2 cut(s) 150, 187
PcsI WCGNNNNNNNCGW 1 cut(s) 866
PctI GAATGC 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 252, 380
PleI GAGTC 3 cut(s) 52, 100, 254
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 3 cut(s) 52, 100, 254
PpuMI RGGWCCY 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 96, 802
PspFI CCCAGC 1 cut(s) 510
PspGI CCWGG 2 cut(s) 96, 802
PspPI GGNCC 8 cut(s) 70, 82, 196, 217, 230, 369, 866, 914
PspPPI RGGWCCY 1 cut(s) 196
RsaI GTAC 4 cut(s) 323, 347, 703, 821
RsaNI GTAC 4 cut(s) 322, 346, 702, 820
RseI CAYNNNNRTG 4 cut(s) 335, 620, 794, 926
SacII CCGCGG 1 cut(s) 135
SapI GCTCTTC 2 cut(s) 150, 187
Sau3AI GATC 4 cut(s) 75, 423, 654, 768
Sau96I GGNCC 8 cut(s) 70, 82, 196, 217, 230, 369, 866, 914
SchI GAGTC 3 cut(s) 52, 100, 255
SduI GDGCHC 1 cut(s) 699
SfaNI GCATC 2 cut(s) 471, 675
SfiI GGCCNNNNNGGCC 1 cut(s) 467
SfoI GGCGCC 1 cut(s) 213
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SinI GGWCC 5 cut(s) 70, 82, 196, 230, 369
SmaI CCCGGG 1 cut(s) 779
SmiMI CAYNNNNRTG 4 cut(s) 335, 620, 794, 926
SmlI CTYRAG 2 cut(s) 138, 356
SmoI CTYRAG 2 cut(s) 138, 356
Sse9I AATT 2 cut(s) 234, 666
SspDI GGCGCC 1 cut(s) 211
StyI CCWWGG 2 cut(s) 66, 471
TaaI ACNGT 5 cut(s) 604, 611, 819, 853, 925
TaiI ACGT 2 cut(s) 468, 768
TaqI TCGA 5 cut(s) 56, 148, 672, 752, 905
TaqII GACCGA 2 cut(s) 386, 436
TasI AATT 2 cut(s) 234, 666
TatI WGTACW 1 cut(s) 321
TauI GCSGC 9 cut(s) 134, 137, 167, 170, 397, 509, 519, 728, 743
TfiI GAWTC 2 cut(s) 252, 380
TscAI CASTG 2 cut(s) 320, 928
TseFI GTSAC 3 cut(s) 571, 622, 937
TseI GCWGC 3 cut(s) 91, 161, 275
Tsp45I GTSAC 3 cut(s) 571, 622, 937
TspDTI ATGAA 2 cut(s) 800, 806
TspMI CCCGGG 1 cut(s) 777
TspRI CASTG 2 cut(s) 320, 928
VpaK11BI GGWCC 5 cut(s) 70, 82, 196, 230, 369
XagI CCTNNNNNAGG 1 cut(s) 77
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmaI CCCGGG 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.