AT2G23770

Protein kinase family protein peptidoglycan-binding LysM domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
10119973 .. 10122479
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23770.1

Sequence Viewer

Length: 1839 bp
ATGATCTCGTTTTCATTTCATCTCCTCGTCTTCATCCTCCTAAGTCTCTCTTCCTTCGCAACAGCACAACAGCCTTATGTCGGAATATCAACAACTGATTGCTCTGTTTCCGACAACACAACCTCTGTTTTCGGCTACTCTTGTAATGGTCTCAACAAAACTTGCCAAGCTTACGTCATTTTCCGATCTACTCCTTCTTTCTCCACCGTCACCTCAATCTCTTCCCTCTTCTCTGTCGACCCATCTCTCGTCTCCTCCCTCAATGACGCTTCACCTTCAACTTCTTTCCCTTCTGGTCAACAAGTCATTATCCCTTTAACTTGTTCTTGCACCGGTGACGATTCACAATCCAATATTACATACACAATCCAACCAAACGATTCGTATTTCGCCATTGCTAACGACACTCTTCAGGGGCTTTCGACATGTCAAGCTTTGGCAAAACAGAACAATGTTTCTTCTCAATCTTTGTTTCCTGGTATGAGGATCGTTGTTCCGATCCGTTGTGCGTGTCCCACGGCTAAACAGATCAACGAAGATGGCGTGAAGTATCTGATGAGTTATACTGTGGTTTTTGAAGACACTATCGCGATCATCAGCGATAGATTCGGGGTTGAGACGAGCAAGACTTTAAAAGCTAACGAAATGTCTTTTGAGAATTCTGAAGTTTTCCCTTTCACAACAATCCTGATCCCTTTGGTGAATCCTCCTGCAAATACTAACTCTCTCATTCCTCCTCCTCCTCCTCCTCCTCCACAATCGGTTTCTCCTCCTCCATTGTCGCCGGATGGTAGGAAATCGAAGAAGAAAACATGGGTCTATGCTCTTGCCGGAGTACTAGGAGGAGCATTGGTTTTGAGTGTGATCGGTGCAGCCATATTTTGCCTGTCTAAGAAGAAAACGAAAACGCAAACGCAAGAGGAAACGGGAAACCTCGATAGCTTCATGGGCAAGAAACCACCGATGTCTGATCAAGAATTCGATCCGCTAGATGGTTTGTCAGGTATGGTGGTAGAATCCTTAAAAGTTTACAAATTTCACGAGCTGCAATCAGCTACAAGCGATTTCACATCGTCTAGCTCGATTGGAGGATCAGGGTACATCGGAAAAATCAACGGCGATGGCGCAATGATCAAGAAAATCGAAGGAAACGCATCGGAGGAAGTCAACTTATTGTCTAAACTAAACCATCTTAACATCATCCGTCTCTCTGGATTCTGTTTCCATGAAGGAGATTGGTACTTAGTCTACGAACACGCTTCAAACGGAAGCTTAAGTGAATGGATCCACACGACGAAATCGTTACTAAGCTTGACACAAAAACTACAAATCGCTTTGGATATAGCAACAGGGCTAAACTATCTACACAACTTCGCTGATCCTCCATACGTTCACAGAGATTTGAACAGCAACAATGTGTTCCTCGACCTCGAGTTTCGAGCAAAGATTGGTAGTTTAGGTTCAGCAAGATCAACGACTGAAGATTTCGTGTTGACCAAGCACGTGGAAGGAACAAGAGGGTACTTAGCTCCGGAGTATTTGGAACATGGTTTAGTTTCAACTAAGCTTGATGTCTATGCTTTTGGAGTTGTCTTGTTGGAGATTGTTACTGGTAAAGAAGCTTCTGAATTGAAGAAAGAGATCGATGAAGGTAAAGCTATTGATGAGATTTTGATTCATGGAAGATTGTTACCTGAAGGATTAACAAGTTTTGTTGAGAGATTAGTGGTGGATTGTTTAAAGAAAGATCATTTGAATCGTCCATCGATGGATGAAAATGTTATGTCTTTGTCTAAGATCTTGGCGGCTACGCAGAACTGGGAAGAATCGTCGTACTAA

Protein Analysis

612

Amino Acids

66.62

Weight (kDa)

5.28

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 54 - 111 2.4e-17 NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5 PF23472 116 - 168 3.3e-21 LYK3/4/5 LysM2 domain
LysM2_NFP PF23457 117 - 167 9.7e-06 NFP LysM2 domain
LysM PF01476 121 - 166 1.4e-07 LysM domain
LysM3_LYK4_5 PF23473 184 - 233 2.3e-16 LYK4/5 LysM3 domain
Pkinase PF00069 380 - 593 1e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 384 - 594 2.1e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 237, 1248
AccII CGCG 1 cut(s) 590
AccIII TCCGGA 1 cut(s) 1531
AciI CCGC 2 cut(s) 986, 1805
AclWI GGATC 8 cut(s) 493, 494, 685, 977, 1099, 1279, 1292, 1373
AcsI RAATTY 3 cut(s) 658, 977, 1034
AcuI CTGAAG 4 cut(s) 395, 684, 1500, 1716
AcvI CACGTG 1 cut(s) 1504
AfaI GTAC 5 cut(s) 837, 1100, 1241, 1523, 1835
AfiI CCNNNNNNNGG 2 cut(s) 80, 992
AflII CTTAAG 1 cut(s) 1273
AflIII ACRYGT 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 7 cut(s) 279, 578, 1263, 1405, 1560, 1633, 1756
AjnI CCWGG 1 cut(s) 475
Alw26I GTCTC 5 cut(s) 50, 155, 256, 611, 1211
AlwI GGATC 8 cut(s) 493, 494, 685, 977, 1099, 1279, 1292, 1373
Ama87I CYCGRG 1 cut(s) 1430
Aor13HI TCCGGA 1 cut(s) 1531
ApeKI GCWGC 2 cut(s) 872, 1045
ApoI RAATTY 3 cut(s) 658, 977, 1034
AsiGI ACCGGT 1 cut(s) 332
AspLEI GCGC 1 cut(s) 1127
AsuHPI GGTGA 4 cut(s) 202, 264, 347, 712
AvaI CYCGRG 1 cut(s) 1430
BamHI GGATCC 1 cut(s) 1284
BarI GAAGNNNNNNTAC 2 cut(s) 1606, 1638
BauI CACGAG 1 cut(s) 1040
BbrPI CACGTG 1 cut(s) 1504
BbsI GAAGAC 2 cut(s) 22, 585
BbvI GCAGC 2 cut(s) 884, 1032
BccI CCATC 8 cut(s) 250, 533, 782, 986, 1115, 1197, 1762, 1771
BceAI ACGGC 2 cut(s) 534, 1132
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 2 cut(s) 970, 1131
BcoDI GTCTC 5 cut(s) 50, 155, 256, 611, 1211
BfaI CTAG 3 cut(s) 839, 989, 1077
BfrI CTTAAG 1 cut(s) 1273
BglII AGATCT 1 cut(s) 1797
BisI GCNGC 3 cut(s) 873, 1046, 1806
BlsI GCNGC 3 cut(s) 874, 1047, 1807
BmcAI AGTACT 1 cut(s) 837
Bme1390I CCNGG 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 1430
BmiI GGNNCC 1 cut(s) 1286
BmrFI CCNGG 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 1828
BmsI GCATC 1 cut(s) 1163
BmuI ACTGGG 1 cut(s) 1828
BpiI GAAGAC 2 cut(s) 22, 585
Bsa29I ATCGAT 2 cut(s) 1644, 1766
BsaAI YACGTR 1 cut(s) 1504
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 516
BsaWI WCCGGW 2 cut(s) 332, 1531
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 992
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 1615, 1823
Bse3DI GCAATG 2 cut(s) 393, 1134
BseAI TCCGGA 1 cut(s) 1531
BseBI CCWGG 1 cut(s) 477
BseCI ATCGAT 2 cut(s) 1644, 1766
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 4 cut(s) 33, 793, 1200, 1777
BseLI CCNNNNNNNGG 2 cut(s) 80, 992
BseMI GCAATG 2 cut(s) 393, 1134
BseNI ACTGG 2 cut(s) 1615, 1823
BseXI GCAGC 2 cut(s) 884, 1032
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 1 cut(s) 590
BshTI ACCGGT 1 cut(s) 332
BshVI ATCGAT 2 cut(s) 1644, 1766
BsiHKCI CYCGRG 1 cut(s) 1430
BsiSI CCGG 4 cut(s) 333, 785, 831, 1532
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 80, 992
BsmAI GTCTC 5 cut(s) 50, 155, 256, 611, 1211
BsmBI CGTCTC 3 cut(s) 256, 611, 1211
BsmFI GGGAC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 1430
Bsp13I TCCGGA 1 cut(s) 1531
Bsp68I TCGCGA 1 cut(s) 590
BspACI CCGC 2 cut(s) 986, 1805
BspDI ATCGAT 2 cut(s) 1644, 1766
BspEI TCCGGA 1 cut(s) 1531
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 1 cut(s) 1286
BspPI GGATC 8 cut(s) 493, 494, 685, 977, 1099, 1279, 1292, 1373
BspTI CTTAAG 1 cut(s) 1273
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 393, 1134
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 2 cut(s) 1615, 1823
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 516
BssSI CACGAG 1 cut(s) 1040
Bst2BI CACGAG 1 cut(s) 1040
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 208, 568
Bst6I CTCTTC 4 cut(s) 55, 226, 233, 414
BstAFI CTTAAG 1 cut(s) 1273
BstBAI YACGTR 1 cut(s) 1504
BstDEI CTNAG 7 cut(s) 41, 891, 1243, 1307, 1525, 1563, 1794
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 4 cut(s) 33, 793, 1200, 1777
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 1127
BstMAI GTCTC 5 cut(s) 50, 155, 256, 611, 1211
BstMWI GCNNNNNNNGC 1 cut(s) 948
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 475
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 2 cut(s) 884, 1032
BstV2I GAAGAC 2 cut(s) 22, 585
BstX2I RGATCY 2 cut(s) 1284, 1797
BstXI CCANNNNNNTGG 1 cut(s) 1504
BstYI RGATCY 2 cut(s) 1284, 1797
Bsu15I ATCGAT 2 cut(s) 1644, 1766
BsuTUI ATCGAT 2 cut(s) 1644, 1766
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 1134
BtsCI GGATG 4 cut(s) 33, 793, 1200, 1777
BtuMI TCGCGA 1 cut(s) 590
CfoI GCGC 1 cut(s) 1127
Cfr10I RCCGGY 1 cut(s) 332
ClaI ATCGAT 2 cut(s) 1644, 1766
CseI GACGC 1 cut(s) 275
Csp6I GTAC 5 cut(s) 836, 1099, 1240, 1522, 1834
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 6 cut(s) 426, 813, 946, 1226, 1547, 1679
CviQI GTAC 5 cut(s) 836, 1099, 1240, 1522, 1834
DdeI CTNAG 7 cut(s) 41, 891, 1243, 1307, 1525, 1563, 1794
DraI TTTAAA 2 cut(s) 633, 1740
Eam1104I CTCTTC 4 cut(s) 55, 226, 233, 414
EarI CTCTTC 4 cut(s) 55, 226, 233, 414
Eco31I GGTCTC 1 cut(s) 155
Eco57I CTGAAG 4 cut(s) 395, 684, 1500, 1716
Eco72I CACGTG 1 cut(s) 1504
Eco88I CYCGRG 1 cut(s) 1430
EcoRI GAATTC 2 cut(s) 658, 977
EcoRII CCWGG 1 cut(s) 475
Esp3I CGTCTC 3 cut(s) 256, 611, 1211
FaeI CATG 6 cut(s) 429, 816, 949, 1229, 1550, 1682
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 1 cut(s) 498
FatI CATG 6 cut(s) 425, 812, 945, 1225, 1546, 1678
FbaI TGATCA 2 cut(s) 970, 1131
FblI GTMKAC 2 cut(s) 237, 1248
Fnu4HI GCNGC 3 cut(s) 873, 1046, 1806
FokI GGATG 4 cut(s) 20, 800, 1187, 1784
Fsp4HI GCNGC 3 cut(s) 873, 1046, 1806
FspBI CTAG 3 cut(s) 839, 989, 1077
GlaI GCGC 1 cut(s) 1126
GluI GCNGC 3 cut(s) 873, 1046, 1806
HapII CCGG 4 cut(s) 333, 785, 831, 1532
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 1127
Hin1II CATG 6 cut(s) 429, 816, 949, 1229, 1550, 1682
Hin6I GCGC 1 cut(s) 1125
HinP1I GCGC 1 cut(s) 1125
HincII GTYRAC 4 cut(s) 238, 299, 1168, 1494
HindII GTYRAC 4 cut(s) 238, 299, 1168, 1494
HindIII AAGCTT 6 cut(s) 168, 432, 1270, 1309, 1565, 1620
HinfI GANTC 9 cut(s) 341, 380, 606, 703, 1016, 1215, 1675, 1756, 1826
HpaII CCGG 4 cut(s) 333, 785, 831, 1532
HphI GGTGA 4 cut(s) 202, 264, 347, 712
Hpy166II GTNNAC 7 cut(s) 238, 299, 1030, 1168, 1249, 1393, 1494
Hpy188III TCNNGA 7 cut(s) 589, 688, 974, 1040, 1135, 1212, 1532
Hpy8I GTNNAC 7 cut(s) 238, 299, 1030, 1168, 1249, 1393, 1494
Hpy99I CGWCG 2 cut(s) 1297, 1834
HpyAV CCTTC 9 cut(s) 64, 204, 285, 300, 1139, 1223, 1502, 1643, 1691
HpyCH4III ACNGT 2 cut(s) 208, 568
HpyCH4IV ACGT 3 cut(s) 174, 1389, 1503
HpyCH4V TGCA 4 cut(s) 330, 713, 872, 1048
HpyF10VI GCNNNNNNNGC 1 cut(s) 948
HpyF3I CTNAG 7 cut(s) 41, 891, 1243, 1307, 1525, 1563, 1794
HpySE526I ACGT 3 cut(s) 174, 1389, 1503
Hsp92II CATG 6 cut(s) 429, 816, 949, 1229, 1550, 1682
HspAI GCGC 1 cut(s) 1125
Kpn2I TCCGGA 1 cut(s) 1531
Ksp22I TGATCA 2 cut(s) 970, 1131
LmnI GCTCC 2 cut(s) 845, 1534
Lsp1109I GCAGC 2 cut(s) 884, 1032
LweI GCATC 1 cut(s) 1163
MaeI CTAG 3 cut(s) 839, 989, 1077
MaeII ACGT 3 cut(s) 174, 1389, 1503
MaeIII GTNAC 5 cut(s) 208, 335, 1302, 1606, 1689
MflI RGATCY 2 cut(s) 1284, 1797
MluCI AATT 4 cut(s) 658, 977, 1034, 1628
MmeI TCCRAC 4 cut(s) 61, 135, 394, 1578
MroI TCCGGA 1 cut(s) 1531
MseI TTAA 7 cut(s) 317, 632, 1022, 1194, 1274, 1703, 1739
MspCI CTTAAG 1 cut(s) 1273
MspI CCGG 4 cut(s) 333, 785, 831, 1532
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 1 cut(s) 948
NlaIII CATG 6 cut(s) 429, 816, 949, 1229, 1550, 1682
NlaIV GGNNCC 1 cut(s) 1286
NmuCI GTSAC 2 cut(s) 208, 335
NruI TCGCGA 1 cut(s) 590
NspI RCATGY 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 1430
PciI ACATGT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 3 cut(s) 540, 1079, 1298
PfeI GAWTC 9 cut(s) 341, 380, 606, 703, 1016, 1215, 1675, 1756, 1826
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 3 cut(s) 874, 1047, 1807
PmaCI CACGTG 1 cut(s) 1504
PmlI CACGTG 1 cut(s) 1504
Ppu21I YACGTR 1 cut(s) 1504
PscI ACATGT 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 475
PspCI CACGTG 1 cut(s) 1504
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 1286
PspXI VCTCGAGB 1 cut(s) 1430
PsrI GAACNNNNNNTAC 2 cut(s) 1444, 1476
PsuI RGATCY 2 cut(s) 1284, 1797
RruI TCGCGA 1 cut(s) 590
RsaI GTAC 5 cut(s) 837, 1100, 1241, 1523, 1835
RsaNI GTAC 5 cut(s) 836, 1099, 1240, 1522, 1834
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 7 cut(s) 317, 632, 1022, 1194, 1274, 1703, 1739
SatI GCNGC 3 cut(s) 873, 1046, 1806
ScaI AGTACT 1 cut(s) 837
ScrFI CCNGG 1 cut(s) 477
SfaNI GCATC 1 cut(s) 1163
Sfr274I CTCGAG 1 cut(s) 1430
SgrAI CRCCGGYG 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 1430
SmlI CTYRAG 2 cut(s) 1273, 1430
SmoI CTYRAG 2 cut(s) 1273, 1430
Sse9I AATT 4 cut(s) 658, 977, 1034, 1628
SsiI CCGC 2 cut(s) 986, 1805
SspI AATATT 1 cut(s) 355
SspMI CTAG 3 cut(s) 839, 989, 1077
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 2 cut(s) 208, 568
TaiI ACGT 3 cut(s) 177, 1392, 1506
TasI AATT 4 cut(s) 658, 977, 1034, 1628
TatI WGTACW 1 cut(s) 835
TauI GCSGC 1 cut(s) 1808
TfiI GAWTC 9 cut(s) 341, 380, 606, 703, 1016, 1215, 1675, 1756, 1826
Tru1I TTAA 7 cut(s) 317, 632, 1022, 1194, 1274, 1703, 1739
Tru9I TTAA 7 cut(s) 317, 632, 1022, 1194, 1274, 1703, 1739
TseFI GTSAC 2 cut(s) 208, 335
TseI GCWGC 2 cut(s) 872, 1045
Tsp45I GTSAC 2 cut(s) 208, 335
TspDTI ATGAA 7 cut(s) 8, 22, 934, 1242, 1662, 1667, 1788
TspGWI ACGGA 3 cut(s) 491, 1193, 1281
Vha464I CTTAAG 1 cut(s) 1273
XapI RAATTY 3 cut(s) 658, 977, 1034
XceI RCATGY 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 1430
XmiI GTMKAC 2 cut(s) 237, 1248
XspI CTAG 3 cut(s) 839, 989, 1077
ZrmI AGTACT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.