Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011988

Physical Location & Seq

Genomic Coordinates Forward (+)

9462564 .. 9463438

Gene Structure 875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTATCCTGAACAGTACCTCCAGCCAAATATGGAGGGTTACGATGTGCAAGAAGGTCTAATACAAGATCCACGCCTTATGACTCAAGAAGAGAATGATAGGGGTTTAGGCTCTGTGTTTAAGCGGGATGACCAAAGACTTCAGCAATTGAGGGAGAAAGATGCTCGAGAAAAGGATCCCAACATTATCTCAGAGAGTTATTCTGAATGTTACCCGGGCTATCAAGAATATAATCGTGAGGTTGTTGACAGCGATGATGAGGATGACTTGTCAAAAATGGACCTGGGTGGACGAGCCAAGGGTCGTCTTCATCGGTGGGACTTCGAGACAGAAGAAGAATGGGCAACATACAATGAACAGAAGGAAGCTATGCCTAAGGCGGCATTCCAGTTTGGTGTGAAGATGCAAAATGGTCGAAAGACACGAAAGCAAAACAAGGACCAGAAGATCAAGAATGATCTGAACAGGATCAACAAGATACTTGCCAGAAAGAAGTCAGAGAAGGATGGGGATGATGATGGTGGCCATTACGATGAAGATGTACAGCCTGGCAAGAAACTTAAGAGTTTAGAGCTAGGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002237 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046677 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071216 GO:0071219 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

22.82

Weight (kDa)

4.98

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_C	PF07807	68 - 174	3.2e-43	RED-like protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23770
fragaria_vesca	FvH4_1g14190
malus_domestica	MD02G1156000.v1.1
prunus_persica	Prupe.7G147600_v2.0.a1
pyrus_communis	pycom02g12330
rosa_chinensis	RchiOBHm_Chr2g0102861
rosa_laevigata	RLG00000017185
rosa_multiflora	Rmu_sc0000388.1_g000048 Rmu_sc0000388.1_g000056 Rmu_sc0000388.1_g000057 Rmu_sc0006537.1_g000006
rosa_roxburghii	Rroxscaffold_2G00140240
rosa_rugosa	Rorug02G0110200
rosa_samantha	Rh2AG158600 Rh2BG165000 Rh2CG164700 Rh2DG163800
rosa_wichuraiana	Rw2G012340 Rw2G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 383
AclWI	GGATC	4 cut(s)	65, 173, 186, 479
AcoI	YGGCCR	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	20, 546
AflII	CTTAAG	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	285, 550
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	2 cut(s)	371, 577
AluI	AGCT	2 cut(s)	371, 577
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	4 cut(s)	65, 173, 186, 479
Ama87I	CYCGRG	2 cut(s)	168, 217
AoxI	GGCC	1 cut(s)	526
AspS9I	GGNCC	2 cut(s)	283, 442
AsuC2I	CCSGG	2 cut(s)	218, 219
AvaI	CYCGRG	2 cut(s)	168, 217
AvaII	GGWCC	2 cut(s)	283, 442
AxyI	CCTNAGG	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BbsI	GAAGAC	1 cut(s)	302
BccI	CCATC	2 cut(s)	503, 515
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	287, 552
BcnI	CCSGG	2 cut(s)	218, 219
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	578
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	4 cut(s)	218, 219, 287, 552
Bme18I	GGWCC	2 cut(s)	283, 442
BmeT110I	CYCGRG	2 cut(s)	168, 217
BmgT120I	GGNCC	2 cut(s)	283, 442
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	4 cut(s)	218, 219, 287, 552
BmsI	GCATC	2 cut(s)	154, 396
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	2 cut(s)	218, 219
BsaJI	CCNNGG	3 cut(s)	217, 286, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	287, 552
BseDI	CCNNGG	3 cut(s)	217, 286, 300
BseGI	GGATG	4 cut(s)	136, 271, 514, 520
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	528
BsiHKCI	CYCGRG	2 cut(s)	168, 217
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	528
BsoBI	CYCGRG	2 cut(s)	168, 217
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	5 cut(s)	70, 178, 450, 460, 471
BspACI	CCGC	2 cut(s)	127, 383
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	4 cut(s)	65, 173, 186, 479
BspTI	CTTAAG	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	217, 286, 300
BssMI	GATC	5 cut(s)	70, 178, 450, 460, 471
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	287, 552
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	193, 378
BstF5I	GGATG	4 cut(s)	136, 271, 514, 520
BstKTI	GATC	5 cut(s)	73, 181, 453, 463, 474
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	5 cut(s)	70, 178, 450, 460, 471
BstNI	CCWGG	2 cut(s)	287, 552
BstSCI	CCNGG	4 cut(s)	216, 217, 285, 550
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	70, 178
BstYI	RGATCY	2 cut(s)	70, 178
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	4 cut(s)	136, 271, 514, 520
Cfr13I	GGNCC	2 cut(s)	283, 442
Cfr9I	CCCGGG	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	19, 545
CviJI	RGCY	9 cut(s)	5, 28, 114, 222, 299, 371, 528, 550, 577
CviKI_1	RGCY	9 cut(s)	5, 28, 114, 222, 299, 371, 528, 550, 577
CviQI	GTAC	2 cut(s)	19, 545
DdeI	CTNAG	2 cut(s)	193, 378
DpnI	GATC	5 cut(s)	72, 180, 452, 462, 473
DpnII	GATC	5 cut(s)	70, 178, 450, 460, 471
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	283, 442
Eco57I	CTGAAG	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	2 cut(s)	168, 217
EcoRII	CCWGG	2 cut(s)	285, 550
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaiI	YATR	5 cut(s)	35, 83, 234, 352, 374
FaqI	GGGAC	1 cut(s)	335
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	4 cut(s)	143, 278, 521, 527
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	250, 293
Hpy188I	TCNGA	4 cut(s)	196, 208, 465, 502
Hpy188III	TCNNGA	7 cut(s)	11, 89, 170, 227, 239, 328, 454
Hpy8I	GTNNAC	2 cut(s)	250, 293
HpyAV	CCTTC	3 cut(s)	50, 358, 499
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	52, 409
HpyF3I	CTNAG	2 cut(s)	193, 378
Kzo9I	GATC	5 cut(s)	70, 178, 450, 460, 471
LweI	GCATC	2 cut(s)	154, 396
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	41, 212
MalI	GATC	5 cut(s)	72, 180, 452, 462, 473
MboI	GATC	5 cut(s)	70, 178, 450, 460, 471
MboII	GAAGA	7 cut(s)	104, 302, 347, 350, 415, 460, 551
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	70, 178
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	31, 32, 147, 235, 256
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	2 cut(s)	123, 564
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	528
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	4 cut(s)	218, 219, 287, 552
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	2 cut(s)	287, 552
NciI	CCSGG	2 cut(s)	218, 219
NdeII	GATC	5 cut(s)	70, 178, 450, 460, 471
NlaIV	GGNNCC	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	424
PctI	GAATGC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	285, 550
PspGI	CCWGG	2 cut(s)	285, 550
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	283, 442
PsuI	RGATCY	2 cut(s)	70, 178
RsaI	GTAC	2 cut(s)	20, 546
RsaNI	GTAC	2 cut(s)	19, 545
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	123, 564
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	5 cut(s)	70, 178, 450, 460, 471
Sau96I	GGNCC	2 cut(s)	283, 442
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	4 cut(s)	218, 219, 287, 552
SetI	ASST	6 cut(s)	24, 61, 246, 288, 373, 579
SfaNI	GCATC	2 cut(s)	154, 396
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	283, 442
SlaI	CTCGAG	1 cut(s)	168
SmaI	CCCGGG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	87, 168, 563
SmoI	CTYRAG	3 cut(s)	87, 168, 563
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	127, 383
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	4 cut(s)	216, 217, 285, 550
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	169, 327, 418
TasI	AATT	1 cut(s)	149
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	123, 564
Tru9I	TTAA	2 cut(s)	123, 564
TspDTI	ATGAA	3 cut(s)	302, 372, 552
TspMI	CCCGGG	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	283, 442
XhoI	CTCGAG	1 cut(s)	168
XmaI	CCCGGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.