Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000388.1

Orthogroup ID

OG0011988

Physical Location & Seq

Genomic Coordinates Reverse (-)

281321 .. 282043

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000388.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgagtttccttcctctcacttcatctatcatcattctcgccaatttttgttgcatttctgtgatccttgctcagcagccttatgaagaacaaaccttcacagattgttacaatccaaacgtgtcgaaatcccttttaggatacacctgcaatggcttcaatagaagtttccaaacttacctcaccttcagatcacagcctccttacaccactgtttcttccatcgccaatatgttggcttctgacccatctcagcttgcagaaatcaactcggtttctgagtccgcaacatttgcgacaaaccagttggtgcttgttccagtcacatgttcttgctcaggtcagtactatcagctaaacacatctcatgttgttgttcatggtgacacatttttagtaattggaaacaatacatttcaaggcctctcaacatgtcaagctatgaagcagcagaacagtaatctcaccacaaaaaatttgtatactggtactagactcagtgttccccttagatgtgcttatcccactaagaaccaaactgatttgggaatcaattatctcatgagttacttagtaacaactggtgattatgtttcaaagattagtgatatatttgatgcagatacaagaaggactcttgaagccaatgagctttcagagaaattccctaacaattatcccttcaccacactgttagttcctttaaaaaaaccttctgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002237 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046677 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071216 GO:0071219 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

26.6

Weight (kDa)

6.08

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23770
fragaria_vesca	FvH4_1g14190
malus_domestica	MD02G1156000.v1.1
prunus_persica	Prupe.7G147600_v2.0.a1
pyrus_communis	pycom02g12330
rosa_chinensis	RchiOBHm_Chr2g0102861
rosa_laevigata	RLG00000017185
rosa_multiflora	Rmu_sc0000388.1_g000048 Rmu_sc0000388.1_g000056 Rmu_sc0000388.1_g000057 Rmu_sc0006537.1_g000006
rosa_roxburghii	Rroxscaffold_2G00140240
rosa_rugosa	Rorug02G0110200
rosa_samantha	Rh2AG158600 Rh2BG165000 Rh2CG164700 Rh2DG163800
rosa_wichuraiana	Rw2G012340 Rw2G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	482
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	475, 662
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	347, 490
AflIII	ACRYGT	3 cut(s)	120, 326, 431
AgsI	TTSAA	4 cut(s)	160, 419, 597, 641
AluBI	AGCT	4 cut(s)	256, 355, 440, 652
AluI	AGCT	4 cut(s)	256, 355, 440, 652
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	76, 448
ApoI	RAATTY	2 cut(s)	475, 662
AsuHPI	GGTGA	5 cut(s)	175, 395, 457, 596, 676
BbvI	GCAGC	2 cut(s)	88, 460
BccI	CCATC	2 cut(s)	230, 256
BciVI	GTATCC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	492, 721
BfuAI	ACCTGC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	77, 449
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	2 cut(s)	78, 450
BmcAI	AGTACT	1 cut(s)	347
BmsI	GCATC	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	337
Bpu1102I	GCTNAGC	1 cut(s)	72
Bse1I	ACTGG	4 cut(s)	304, 320, 490, 586
Bse3DI	GCAATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	5 cut(s)	86, 266, 270, 351, 511
BseNI	ACTGG	4 cut(s)	304, 320, 490, 586
BseXI	GCAGC	2 cut(s)	88, 460
BshFI	GGCC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	63, 191
Bsp1720I	GCTNAGC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	5 cut(s)	85, 265, 271, 350, 510
BspHI	TCATGA	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	4 cut(s)	304, 320, 490, 586
BssMI	GATC	2 cut(s)	63, 191
BssNAI	GTATAC	1 cut(s)	483
Bst1107I	GTATAC	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	214, 458, 693
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	8 cut(s)	72, 252, 279, 337, 497, 509, 528, 571
BstKTI	GATC	2 cut(s)	66, 194
BstMBI	GATC	2 cut(s)	63, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	330, 435
BstV1I	GCAGC	2 cut(s)	88, 460
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	210, 505, 689
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	346, 489
CviAII	CATG	5 cut(s)	327, 368, 380, 432, 562
CviQI	GTAC	2 cut(s)	346, 489
DdeI	CTNAG	8 cut(s)	72, 252, 279, 337, 497, 509, 528, 571
DpnI	GATC	2 cut(s)	65, 193
DpnII	GATC	2 cut(s)	63, 191
DraI	TTTAAA	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	172
FaeI	CATG	5 cut(s)	330, 371, 383, 435, 565
FatI	CATG	5 cut(s)	326, 367, 379, 431, 561
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	2 cut(s)	77, 449
Fsp4HI	GCNGC	2 cut(s)	77, 449
FspBI	CTAG	2 cut(s)	492, 721
GluI	GCNGC	2 cut(s)	77, 449
HaeIII	GGCC	1 cut(s)	423
Hin1II	CATG	5 cut(s)	330, 371, 383, 435, 565
HinfI	GANTC	4 cut(s)	281, 495, 549, 634
HphI	GGTGA	5 cut(s)	175, 395, 457, 596, 676
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	4 cut(s)	191, 244, 280, 658
Hpy188III	TCNNGA	2 cut(s)	562, 638
Hpy8I	GTNNAC	1 cut(s)	483
HpyAV	CCTTC	6 cut(s)	20, 106, 196, 624, 691, 723
HpyCH4III	ACNGT	3 cut(s)	214, 458, 693
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	54, 150, 260, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	8 cut(s)	72, 252, 279, 337, 497, 509, 528, 571
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	330, 371, 383, 435, 565
Kzo9I	GATC	2 cut(s)	63, 191
LpnPI	CCDG	6 cut(s)	160, 317, 324, 333, 471, 567
Lsp1109I	GCAGC	2 cut(s)	88, 460
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	492, 721
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	5 cut(s)	107, 322, 383, 566, 574
MalI	GATC	2 cut(s)	65, 193
MboI	GATC	2 cut(s)	63, 191
MboII	GAAGA	2 cut(s)	98, 210
MluCI	AATT	6 cut(s)	43, 399, 475, 553, 662, 673
MlyI	GAGTC	3 cut(s)	290, 489, 628
MnlI	CCTC	4 cut(s)	24, 191, 210, 434
MseI	TTAA	1 cut(s)	704
MslI	CAYNNNNRTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	2 cut(s)	63, 191
NlaIII	CATG	5 cut(s)	330, 371, 383, 435, 565
NmuCI	GTSAC	2 cut(s)	322, 383
NspI	RCATGY	2 cut(s)	330, 435
PagI	TCATGA	1 cut(s)	561
PaqCI	CACCTGC	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	423
PciI	ACATGT	2 cut(s)	326, 431
PfeI	GAWTC	1 cut(s)	549
PkrI	GCNGC	2 cut(s)	78, 450
PleI	GAGTC	3 cut(s)	289, 489, 628
PpsI	GAGTC	3 cut(s)	289, 489, 628
PscI	ACATGT	2 cut(s)	326, 431
RsaI	GTAC	2 cut(s)	347, 490
RsaNI	GTAC	2 cut(s)	346, 489
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	2 cut(s)	77, 449
Sau3AI	GATC	2 cut(s)	63, 191
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	3 cut(s)	290, 489, 628
SfaNI	GCATC	1 cut(s)	607
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	6 cut(s)	43, 399, 475, 553, 662, 673
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	492, 721
StuI	AGGCCT	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	214, 458, 693
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	125
TasI	AATT	6 cut(s)	43, 399, 475, 553, 662, 673
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TscAI	CASTG	3 cut(s)	217, 505, 696
TseFI	GTSAC	2 cut(s)	322, 383
TseI	GCWGC	2 cut(s)	76, 448
Tsp45I	GTSAC	2 cut(s)	322, 383
TspDTI	ATGAA	4 cut(s)	12, 99, 368, 458
TspRI	CASTG	3 cut(s)	217, 505, 696
XapI	RAATTY	2 cut(s)	475, 662
XceI	RCATGY	2 cut(s)	330, 435
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	2 cut(s)	492, 721
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.