Rw2G012390

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
12887138 .. 12889094
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012390.1

Sequence Viewer

Length: 1797 bp
ATGAGTTTCCTTCCTCTCACTTCATCTATCATCATTCTCGCCAATTTTTGTTGCGTTTCTGTGATCCTTGCTCAGCAGCCTTATGAAGGACAAGCCTTCACAGATTGTTACAATCCAAACGTGTCGAAATCCCTTTTCGGATACAGCTGCAATGGCTTCAACAGAAGTTGCCAAACTTACCTCACCTTCAGATCACAGCCTCCTTACACCACTGTTTCTTCCATCGCCACTATGTTGGCTTCTGACCCATCTCAGCTTGCAGAAATCAACTCGGTTTCTGAGTCCGCAACATTTGCGACAAACCAGTTGGTGCTTGTTCCAGTCACCTGTTCTTGCTCAGGTCAGTACTATCAGCTAAACACATCTCATGTTGTTGTTCATGGTGATACATTTTTAGTAATTGGAAACAATACATTTCAAGGCCTCTCAACTTGTCAAGCTATGATGCAGCAGAACAGTAATCTCACCACAAAGAATTTGTATACTGGTACTAGACTCAGTGTTCCCCTTAGATGTGCTTGTCCCACTAAGAACCAAACTGATTTGGGAATCAATTATCTCATGAGTTACTTAGTAACAACTGGTGATTATGTTTCAAAGATTAGTGATAGATTTGATGCAGATACAGGAAGGACTCTTGAAGCCAATGAGCTTTCAGAGCAATTCCCTAACATTTATCCCTTCACCACACTCTTAGTTCCTTTAAAAAACCCTCCATCTAGTTCACAAACCATAGAGCCACCTTCATCATCACCGCCATCACCTCCGGCTTTCCCTCCAGCTGCGTCGAAGAACTCAAAGAAAACATGGGTTTATGTAGTTGCTGGGGCTATTGGAGGAGGTGGTGTTGTTCTGGTAATAGGCTTCCTCATCTTCTTCACATTCTTCCGCAGAAGAAGTAAGAAGAAGACTGATACAGTTGTTTCTATATCTAGAGACATAGCTCACATGGCTCTATCCCTCAAAGTTTACAAATTTGAGGAACTGCAAAATGCAACAGAGAACTTCAGCTCCAGTTGTTTGATCAAAGGATCTGTTTTTCGCGGCATATTTGATGGGGATGTGGCTGCAATCAAGAAAATGAATGGGAATGTGTCCAAAGAAATCAATTTGCTAAACAAAATCAACCATTCTAATCTGATTCGTCTCTCCGGGGTTTGCTTTAATGATGGTCATTGGTATCTGATATATGAGTACGCTGTCAATGGACCCTTGAGTGATTGGATTTATTTTGAAGACAATGATGGGAAGATTTTGAGTTGGACACAAAGAGTGCAGATTATGTTGGATGTGGCCTCAGGGCTTAATTATCTGCACAGCTTCACCACTCCTCCTCATGTCCACAAGGATATAAAGAGCAGTAACATTCTTCTTGACAGTGATTTCAGGGCCAAGATTGCGAATTTTGGTCTAGCAAGGTCAGCTGGTGCGCAAGAGGGTCACTTTTCTTTGACGAATCACATTGTTGGAACGATAGGGTACATGGCTCCTGAGTACTTAGAAAATGGTTTGATCTCCACAAAGCTTGATGTCTACGCATTTGGGGCACTCATGTTGGAATTACTCACCGGAAAAGAGGTTGCGGTGCTTTTTGAACAAAATGTGCACTTGTCTGATATACTGAACTCTTTGCTTAACAATGAAGATGGAGGACAGAGTTTGCGGCATTTGATTGATAGTTGCTTGAAGAAAAACCCAGGATCTCGCCCAGACATGAATGAGATGGTGCAGCTTCTCTCAAGAACCATGAGCTACCAAGGTTCAGCGGGAGTTCTTGATGGTACAGAAAGTGGATAA

Protein Analysis

598

Amino Acids

65.57

Weight (kDa)

6.32

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 56 - 112 8.9e-20 NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5 PF23472 116 - 171 4.7e-22 LYK3/4/5 LysM2 domain
LysM3_LYK4_5 PF23473 186 - 235 1.6e-20 LYK4/5 LysM3 domain
Pkinase PF00069 359 - 577 1.7e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 362 - 578 2.9e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1431
AccI GTMKAC 2 cut(s) 482, 1533
AccII CGCG 1 cut(s) 1044
AciI CCGC 7 cut(s) 285, 755, 889, 1044, 1583, 1663, 1766
AclWI GGATC 3 cut(s) 58, 1039, 1708
AcsI RAATTY 3 cut(s) 475, 974, 1402
AcuI CTGAAG 2 cut(s) 172, 991
AfaI GTAC 6 cut(s) 347, 490, 1196, 1481, 1496, 1783
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 7 cut(s) 160, 419, 597, 641, 1235, 1595, 1687
AjnI CCWGG 1 cut(s) 1696
AloI GAACNNNNNNTCC 2 cut(s) 995, 1027
Alw21I GWGCWC 1 cut(s) 1608
Alw26I GTCTC 2 cut(s) 930, 1151
Alw44I GTGCAC 1 cut(s) 1604
AlwI GGATC 3 cut(s) 58, 1039, 1708
AoxI GGCC 3 cut(s) 421, 1293, 1389
ApaLI GTGCAC 1 cut(s) 1604
ApeKI GCWGC 6 cut(s) 76, 147, 448, 782, 1067, 1729
ApoI RAATTY 3 cut(s) 475, 974, 1402
AspLEI GCGC 1 cut(s) 1432
AspS9I GGNCC 2 cut(s) 1208, 1389
AsuC2I CCSGG 1 cut(s) 1153
AvaII GGWCC 1 cut(s) 1208
AxyI CCTNAGG 1 cut(s) 1297
BaeGI GKGCMC 2 cut(s) 1549, 1608
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BbsI GAAGAC 2 cut(s) 914, 1242
Bbv12I GWGCWC 1 cut(s) 1608
BbvI GCAGC 6 cut(s) 88, 134, 460, 769, 1054, 1741
BciT130I CCWGG 1 cut(s) 1698
BciVI GTATCC 1 cut(s) 134
BclI TGATCA 1 cut(s) 1023
BcnI CCSGG 1 cut(s) 1153
BcoDI GTCTC 2 cut(s) 930, 1151
BfaI CTAG 4 cut(s) 492, 720, 933, 1412
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 8 cut(s) 77, 148, 449, 783, 1045, 1068, 1664, 1730
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 8 cut(s) 78, 149, 450, 784, 1046, 1069, 1665, 1731
BmcAI AGTACT 2 cut(s) 347, 1496
Bme1390I CCNGG 2 cut(s) 1153, 1698
Bme18I GGWCC 1 cut(s) 1208
BmgT120I GGNCC 2 cut(s) 1208, 1389
BmiI GGNNCC 2 cut(s) 1210, 1488
BmrFI CCNGG 2 cut(s) 1153, 1698
BmsI GCATC 2 cut(s) 435, 607
BpiI GAAGAC 2 cut(s) 914, 1242
BpmI CTGGAG 2 cut(s) 762, 997
Bpu10I CCTNAGC 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 1234, 1723
BpuMI CCSGG 1 cut(s) 1153
BsaJI CCNNGG 3 cut(s) 1152, 1696, 1756
BsaWI WCCGGW 1 cut(s) 1568
BsaXI ACNNNNNCTCC 6 cut(s) 831, 861, 995, 1025, 1315, 1345
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 5 cut(s) 304, 320, 490, 586, 1014
Bse21I CCTNAGG 1 cut(s) 1297
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 1698
BseDI CCNNGG 3 cut(s) 1152, 1696, 1756
BseGI GGATG 2 cut(s) 1066, 1294
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 7 cut(s) 86, 266, 270, 351, 511, 1311, 1482
BseNI ACTGG 5 cut(s) 304, 320, 490, 586, 1014
BseRI GAGGAG 3 cut(s) 852, 1320, 1323
BseSI GKGCMC 2 cut(s) 1549, 1608
BseXI GCAGC 6 cut(s) 88, 134, 460, 769, 1054, 1741
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 3 cut(s) 1295, 1298, 1748
Bsh1236I CGCG 1 cut(s) 1044
BshFI GGCC 3 cut(s) 423, 1295, 1391
BsiHKAI GWGCWC 1 cut(s) 1608
BsiSI CCGG 3 cut(s) 767, 1152, 1569
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 930, 1151
BsmBI CGTCTC 1 cut(s) 1151
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 3 cut(s) 423, 1295, 1391
Bsp1286I GDGCHC 2 cut(s) 1549, 1608
Bsp143I GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 7 cut(s) 285, 755, 889, 1044, 1583, 1663, 1766
BspANI GGCC 3 cut(s) 423, 1295, 1391
BspCNI CTCAG 7 cut(s) 85, 265, 271, 350, 510, 1310, 1483
BspFNI CGCG 1 cut(s) 1044
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 1210, 1488
BspPI GGATC 3 cut(s) 58, 1039, 1708
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 5 cut(s) 304, 320, 490, 586, 1014
BssECI CCNNGG 3 cut(s) 1152, 1696, 1756
BssMI GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 1756
Bst1107I GTATAC 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 1698
Bst4CI ACNGT 4 cut(s) 214, 458, 919, 1379
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 258
BstENI CCTNNNNNAGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 1066, 1294
BstFNI CGCG 1 cut(s) 1044
BstHHI GCGC 1 cut(s) 1432
BstKTI GATC 6 cut(s) 66, 194, 1026, 1034, 1515, 1703
BstMAI GTCTC 2 cut(s) 930, 1151
BstMBI GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
BstMWI GCNNNNNNNGC 7 cut(s) 153, 293, 658, 950, 1397, 1421, 1544
BstNI CCWGG 1 cut(s) 1698
BstSCI CCNGG 2 cut(s) 1151, 1696
BstSLI GKGCMC 2 cut(s) 1549, 1608
BstUI CGCG 1 cut(s) 1044
BstV1I GCAGC 6 cut(s) 88, 134, 460, 769, 1054, 1741
BstV2I GAAGAC 2 cut(s) 914, 1242
BstX2I RGATCY 2 cut(s) 1031, 1700
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 1031, 1700
BstZ17I GTATAC 1 cut(s) 483
Bsu36I CCTNAGG 1 cut(s) 1297
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 3 cut(s) 423, 1295, 1391
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 2 cut(s) 1066, 1294
BtsIMutI CAGTG 3 cut(s) 210, 505, 1384
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 561
CfoI GCGC 1 cut(s) 1432
Cfr13I GGNCC 2 cut(s) 1208, 1389
CseI GACGC 1 cut(s) 774
Csp6I GTAC 6 cut(s) 346, 489, 1195, 1480, 1495, 1782
CspCI CAANNNNNGTGG 2 cut(s) 1507, 1542
CviQI GTAC 6 cut(s) 346, 489, 1195, 1480, 1495, 1782
DpnI GATC 6 cut(s) 65, 193, 1025, 1033, 1514, 1702
DpnII GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
DraI TTTAAA 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 1756
Eco147I AGGCCT 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 1208
Eco57I CTGAAG 2 cut(s) 172, 991
Eco81I CCTNAGG 1 cut(s) 1297
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 1696
EcoT14I CCWWGG 1 cut(s) 1756
ErhI CCWWGG 1 cut(s) 1756
Esp3I CGTCTC 1 cut(s) 1151
FaqI GGGAC 1 cut(s) 507
FauI CCCGC 1 cut(s) 1759
FbaI TGATCA 1 cut(s) 1023
FblI GTMKAC 2 cut(s) 482, 1533
Fnu4HI GCNGC 8 cut(s) 77, 148, 449, 783, 1045, 1068, 1664, 1730
FokI GGATG 2 cut(s) 1073, 1301
Fsp4HI GCNGC 8 cut(s) 77, 148, 449, 783, 1045, 1068, 1664, 1730
FspBI CTAG 4 cut(s) 492, 720, 933, 1412
FspI TGCGCA 1 cut(s) 1431
GlaI GCGC 1 cut(s) 1431
GluI GCNGC 8 cut(s) 77, 148, 449, 783, 1045, 1068, 1664, 1730
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 2 cut(s) 762, 997
HaeIII GGCC 3 cut(s) 423, 1295, 1391
HapII CCGG 3 cut(s) 767, 1152, 1569
HgaI GACGC 1 cut(s) 774
HhaI GCGC 1 cut(s) 1432
Hin6I GCGC 1 cut(s) 1430
HinP1I GCGC 1 cut(s) 1430
HindIII AAGCTT 1 cut(s) 1523
HinfI GANTC 6 cut(s) 281, 495, 549, 634, 1141, 1456
HpaII CCGG 3 cut(s) 767, 1152, 1569
Hpy166II GTNNAC 6 cut(s) 483, 725, 970, 1342, 1534, 1606
Hpy188I TCNGA 8 cut(s) 140, 191, 244, 280, 658, 1140, 1185, 1615
Hpy188III TCNNGA 8 cut(s) 562, 638, 933, 1075, 1373, 1490, 1740, 1775
Hpy8I GTNNAC 6 cut(s) 483, 725, 970, 1342, 1534, 1606
Hpy99I CGWCG 1 cut(s) 790
HpyAV CCTTC 7 cut(s) 20, 80, 106, 196, 624, 691, 753
HpyCH4III ACNGT 4 cut(s) 214, 458, 919, 1379
HpyCH4IV ACGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 293, 658, 950, 1397, 1421, 1544
HpySE526I ACGT 1 cut(s) 120
HspAI GCGC 1 cut(s) 1430
Ksp22I TGATCA 1 cut(s) 1023
Kzo9I GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
LmnI GCTCC 2 cut(s) 1016, 1492
Lsp1109I GCAGC 6 cut(s) 88, 134, 460, 769, 1054, 1741
LweI GCATC 2 cut(s) 435, 607
MaeI CTAG 4 cut(s) 492, 720, 933, 1412
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 6 cut(s) 107, 322, 566, 574, 1361, 1439
MalI GATC 6 cut(s) 65, 193, 1025, 1033, 1514, 1702
MboI GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
MflI RGATCY 2 cut(s) 1031, 1700
MhlI GDGCHC 2 cut(s) 1549, 1608
MlyI GAGTC 3 cut(s) 290, 489, 628
MmeI TCCRAC 4 cut(s) 1241, 1266, 1447, 1536
MseI TTAA 4 cut(s) 704, 1164, 1305, 1635
MspA1I CMGCKG 4 cut(s) 147, 782, 1424, 1766
MspI CCGG 3 cut(s) 767, 1152, 1569
MspR9I CCNGG 2 cut(s) 1153, 1698
MvaI CCWGG 1 cut(s) 1698
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 7 cut(s) 153, 293, 658, 950, 1397, 1421, 1544
NciI CCSGG 1 cut(s) 1153
NdeII GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
NlaIV GGNNCC 2 cut(s) 1210, 1488
NmuCI GTSAC 2 cut(s) 322, 1439
NsbI TGCGCA 1 cut(s) 1431
PagI TCATGA 1 cut(s) 561
PceI AGGCCT 1 cut(s) 423
PfeI GAWTC 3 cut(s) 549, 1141, 1456
PkrI GCNGC 8 cut(s) 78, 149, 450, 784, 1046, 1069, 1665, 1731
PleI GAGTC 3 cut(s) 289, 489, 628
PpsI GAGTC 3 cut(s) 289, 489, 628
Psp6I CCWGG 1 cut(s) 1696
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 1696
PspN4I GGNNCC 2 cut(s) 1210, 1488
PspPI GGNCC 2 cut(s) 1208, 1389
PsuI RGATCY 2 cut(s) 1031, 1700
PvuII CAGCTG 3 cut(s) 147, 782, 1424
RsaI GTAC 6 cut(s) 347, 490, 1196, 1481, 1496, 1783
RsaNI GTAC 6 cut(s) 346, 489, 1195, 1480, 1495, 1782
SaqAI TTAA 4 cut(s) 704, 1164, 1305, 1635
SatI GCNGC 8 cut(s) 77, 148, 449, 783, 1045, 1068, 1664, 1730
Sau3AI GATC 6 cut(s) 63, 191, 1023, 1031, 1512, 1700
Sau96I GGNCC 2 cut(s) 1208, 1389
ScaI AGTACT 2 cut(s) 347, 1496
SchI GAGTC 3 cut(s) 290, 489, 628
ScrFI CCNGG 2 cut(s) 1153, 1698
SduI GDGCHC 2 cut(s) 1549, 1608
SfaNI GCATC 2 cut(s) 435, 607
SinI GGWCC 1 cut(s) 1208
SmlI CTYRAG 2 cut(s) 1213, 1738
SmoI CTYRAG 2 cut(s) 1213, 1738
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 7 cut(s) 285, 755, 889, 1044, 1583, 1663, 1766
SspMI CTAG 4 cut(s) 492, 720, 933, 1412
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 1151, 1696
StyI CCWWGG 1 cut(s) 1756
TaaI ACNGT 4 cut(s) 214, 458, 919, 1379
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 125, 788
TatI WGTACW 2 cut(s) 345, 1494
TauI GCSGC 2 cut(s) 1047, 1666
TfiI GAWTC 3 cut(s) 549, 1141, 1456
Tru1I TTAA 4 cut(s) 704, 1164, 1305, 1635
Tru9I TTAA 4 cut(s) 704, 1164, 1305, 1635
TscAI CASTG 3 cut(s) 217, 505, 1384
TseFI GTSAC 2 cut(s) 322, 1439
TseI GCWGC 6 cut(s) 76, 147, 448, 782, 1067, 1729
Tsp45I GTSAC 2 cut(s) 322, 1439
TspDTI ATGAA 7 cut(s) 12, 99, 368, 735, 1097, 1656, 1730
TspRI CASTG 3 cut(s) 217, 505, 1384
VneI GTGCAC 1 cut(s) 1604
VpaK11BI GGWCC 1 cut(s) 1208
XagI CCTNNNNNAGG 1 cut(s) 84
XapI RAATTY 3 cut(s) 475, 974, 1402
XbaI TCTAGA 1 cut(s) 932
XmiI GTMKAC 2 cut(s) 482, 1533
XspI CTAG 4 cut(s) 492, 720, 933, 1412
ZrmI AGTACT 2 cut(s) 347, 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.