Rmu_sc0000388.1_g000048

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000388.1
Physical Location & Seq
Reverse (-)
251501 .. 253477
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000388.1_g000048.1.cds

Sequence Viewer

Length: 1977 bp
atgagtttccttcctctcacttcatctatcatcattctcgccaatttttgttgcgtttctgtgatccttgctcagcagccttatgaaggacaagccttcacagattgttacaatccaaacgtgtcgaaatcccttttcggatacagctgcaatggcttcaacagaagttgccaaacttacgtcaccttcagatcacagcctccttacaccactgtttcttccatcgccaatatgttggcttctgacccatctcagcttgcagaaatcaactcggtttctgagtccgcaacatttgcgacaaaccagttggtgcttgttccagtcacctgttcttgctcaggtcagtactatcagctaaacacatctcatgttgttgttcatggtgatacatttttagtaattggaaacaatacatttcaaggcctctcaacttgtcaagctatgatgcagcagaacagtaatctcaccacaaagaatttgtatactggtactagactcagtgttccccttagatgtgcttgtcccactaagaaccaaactgatttgggaatcaattatctcatgagttacttagtaacaactggtgattatgtttcaaagattagtgatagatttgatgcagatacaggaaggactcttgaagccaatgagctttcagagcaattccctaacatttatcccttcaccacactcttagttcctttaaaaaaccctccatctagttcacaaaccatagagccaccttcatcatcaccgccatcacctccggctttccctccagctgcctcgaagaactcaaagaaaacatgggtttatgtagttgctggggctattggaggaggtggtgttgttctggtaataggcttcctcatcttcttcacattcttccgcagaagaagtaagaagaagactgatacagttgttgtatcggaaagctttgaggcgcttgagaaaccactacagaaaataggggatgaagattctgaatctcaggactttctagagtctatatctagagacatagctcacatggctctatccctcaaagtttacaaatttgaggaactgcaaaatgcaacagagaacttcagctccagttgtttgatcaaaggatctgtttttcgcggcatatttgatggggatgtggctgcaatcaagaaaatgaatgggaatgtgtccaaagaaatcaatttgctaaacaaaatcaaccattctaatctgattcgtctctccggggtttgctttaatgatggtcattggtatctgatatatgagtacgctgtcaatggacccttgagtaattggatttattttgaagacaatgatgggaagattttgagttggacacaaagagtgcagattatgttggatgtggcctcagggcttaattatctgcacagcttcaccgctcctcctcatgtccacaaggatataaagagcagtaacattcttcttgacagtgatttcagggccaagattgcgaattttggtctagcaaggtcagctggtgcgcaagacggtcacttttctttgacgaatcacattgttggaacgatagggtacgtggctcctgagtacttagaaaatggtttgatctccacaaagcttgatgtctacgcatttggggcactcatgttggaattactcaccggaaaagaggttgcggtgctttttgaacaaaatgtgcacttgtctgatatactgaactctttgcttaacaatgaagatggaggacagagtgtgcggcagttcatggatcctgctttgcaagagaattatcctcaagagtttgctatttttgtgatcaggttgattgatagttgcttgaagaaaaacccaggatctcgcccagacatgaatgagatggtgcagcttctctcaagaaccatgagtaattcactgacttgggaattgtcaagcaacacctcaggctaccaaggttcagcgggagttcttgatggtacagaaagtggataa

Protein Analysis

658

Amino Acids

72.31

Weight (kDa)

5.4

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1512
AccBSI CCGCTC 1 cut(s) 1409
AccI GTMKAC 2 cut(s) 482, 1614
AccII CGCG 1 cut(s) 1125
AciI CCGC 8 cut(s) 285, 755, 889, 1125, 1407, 1664, 1744, 1946
AclWI GGATC 5 cut(s) 58, 1120, 1751, 1764, 1849
AcsI RAATTY 3 cut(s) 475, 1055, 1483
AcuI CTGAAG 2 cut(s) 172, 1072
AfaI GTAC 6 cut(s) 347, 490, 1277, 1562, 1577, 1963
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 7 cut(s) 160, 419, 597, 641, 1316, 1676, 1828
AjnI CCWGG 1 cut(s) 1837
AloI GAACNNNNNNTCC 2 cut(s) 1076, 1108
Alw21I GWGCWC 1 cut(s) 1689
Alw26I GTCTC 2 cut(s) 1011, 1232
Alw44I GTGCAC 1 cut(s) 1685
AlwI GGATC 5 cut(s) 58, 1120, 1751, 1764, 1849
AoxI GGCC 3 cut(s) 421, 1374, 1470
ApaLI GTGCAC 1 cut(s) 1685
ApeKI GCWGC 6 cut(s) 76, 147, 448, 782, 1148, 1870
ApoI RAATTY 3 cut(s) 475, 1055, 1483
AspLEI GCGC 2 cut(s) 946, 1513
AspS9I GGNCC 2 cut(s) 1289, 1470
AsuC2I CCSGG 1 cut(s) 1234
AvaII GGWCC 1 cut(s) 1289
AxyI CCTNAGG 2 cut(s) 1378, 1927
BaeGI GKGCMC 2 cut(s) 1630, 1689
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BamHI GGATCC 1 cut(s) 1756
BbsI GAAGAC 2 cut(s) 914, 1323
Bbv12I GWGCWC 1 cut(s) 1689
BbvI GCAGC 6 cut(s) 88, 134, 460, 769, 1135, 1882
BciT130I CCWGG 1 cut(s) 1839
BciVI GTATCC 1 cut(s) 134
BclI TGATCA 2 cut(s) 1104, 1803
BcnI CCSGG 1 cut(s) 1234
BcoDI GTCTC 2 cut(s) 1011, 1232
BfaI CTAG 5 cut(s) 492, 720, 1001, 1014, 1493
BfmI CTRYAG 1 cut(s) 959
BfoI RGCGCY 1 cut(s) 947
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 8 cut(s) 77, 148, 449, 783, 1126, 1149, 1745, 1871
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 8 cut(s) 78, 149, 450, 784, 1127, 1150, 1746, 1872
BmcAI AGTACT 2 cut(s) 347, 1577
Bme1390I CCNGG 2 cut(s) 1234, 1839
Bme18I GGWCC 1 cut(s) 1289
BmgT120I GGNCC 2 cut(s) 1289, 1470
BmiI GGNNCC 3 cut(s) 1291, 1569, 1758
BmrFI CCNGG 2 cut(s) 1234, 1839
BmsI GCATC 2 cut(s) 435, 607
BpiI GAAGAC 2 cut(s) 914, 1323
BpmI CTGGAG 2 cut(s) 762, 1078
Bpu10I CCTNAGC 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 4 cut(s) 968, 1315, 1767, 1864
BpuMI CCSGG 1 cut(s) 1234
BsaAI YACGTR 1 cut(s) 1564
BsaJI CCNNGG 3 cut(s) 1233, 1837, 1936
BsaWI WCCGGW 1 cut(s) 1649
BsaXI ACNNNNNCTCC 6 cut(s) 831, 861, 1076, 1106, 1396, 1426
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 5 cut(s) 304, 320, 490, 586, 1095
Bse21I CCTNAGG 2 cut(s) 1378, 1927
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 1839
BseDI CCNNGG 3 cut(s) 1233, 1837, 1936
BseGI GGATG 3 cut(s) 979, 1147, 1375
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 9 cut(s) 86, 266, 270, 351, 511, 1004, 1392, 1563, 1941
BseNI ACTGG 5 cut(s) 304, 320, 490, 586, 1095
BseRI GAGGAG 3 cut(s) 852, 1401, 1404
BseSI GKGCMC 2 cut(s) 1630, 1689
BseXI GCAGC 6 cut(s) 88, 134, 460, 769, 1135, 1882
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 3 cut(s) 1376, 1379, 1889
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 3 cut(s) 423, 1376, 1472
BsiHKAI GWGCWC 1 cut(s) 1689
BsiSI CCGG 3 cut(s) 767, 1233, 1650
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 1011, 1232
BsmBI CGTCTC 1 cut(s) 1232
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 3 cut(s) 423, 1376, 1472
Bsp1286I GDGCHC 2 cut(s) 1630, 1689
Bsp143I GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 8 cut(s) 285, 755, 889, 1125, 1407, 1664, 1744, 1946
BspANI GGCC 3 cut(s) 423, 1376, 1472
BspCNI CTCAG 9 cut(s) 85, 265, 271, 350, 510, 1003, 1391, 1564, 1940
BspFNI CGCG 1 cut(s) 1125
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 3 cut(s) 1291, 1569, 1758
BspPI GGATC 5 cut(s) 58, 1120, 1751, 1764, 1849
BsrBI CCGCTC 1 cut(s) 1409
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 5 cut(s) 304, 320, 490, 586, 1095
BssECI CCNNGG 3 cut(s) 1233, 1837, 1936
BssMI GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 1936
Bst1107I GTATAC 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 1839
Bst4CI ACNGT 5 cut(s) 214, 458, 919, 1460, 1520
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 1564
BstC8I GCNNGC 1 cut(s) 258
BstENI CCTNNNNNAGG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 979, 1147, 1375
BstFNI CGCG 1 cut(s) 1125
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 2 cut(s) 946, 1513
BstKTI GATC 8 cut(s) 66, 194, 1107, 1115, 1596, 1759, 1806, 1844
BstMAI GTCTC 2 cut(s) 1011, 1232
BstMBI GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
BstMWI GCNNNNNNNGC 7 cut(s) 153, 293, 658, 1031, 1478, 1502, 1625
BstNI CCWGG 1 cut(s) 1839
BstSCI CCNGG 2 cut(s) 1232, 1837
BstSFI CTRYAG 1 cut(s) 959
BstSLI GKGCMC 2 cut(s) 1630, 1689
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 6 cut(s) 88, 134, 460, 769, 1135, 1882
BstV2I GAAGAC 2 cut(s) 914, 1323
BstX2I RGATCY 3 cut(s) 1112, 1756, 1841
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 3 cut(s) 1112, 1756, 1841
BstZ17I GTATAC 1 cut(s) 483
Bsu36I CCTNAGG 2 cut(s) 1378, 1927
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 3 cut(s) 423, 1376, 1472
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 3 cut(s) 979, 1147, 1375
BtsIMutI CAGTG 4 cut(s) 210, 505, 1465, 1898
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 561
CfoI GCGC 2 cut(s) 946, 1513
Cfr13I GGNCC 2 cut(s) 1289, 1470
Csp6I GTAC 6 cut(s) 346, 489, 1276, 1561, 1576, 1962
CspCI CAANNNNNGTGG 2 cut(s) 1588, 1623
CviQI GTAC 6 cut(s) 346, 489, 1276, 1561, 1576, 1962
DpnI GATC 8 cut(s) 65, 193, 1106, 1114, 1595, 1758, 1805, 1843
DpnII GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
DraI TTTAAA 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 1936
Eco147I AGGCCT 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 1289
Eco57I CTGAAG 2 cut(s) 172, 1072
Eco81I CCTNAGG 2 cut(s) 1378, 1927
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 1837
EcoT14I CCWWGG 1 cut(s) 1936
ErhI CCWWGG 1 cut(s) 1936
Esp3I CGTCTC 1 cut(s) 1232
FaqI GGGAC 1 cut(s) 507
FauI CCCGC 1 cut(s) 1939
FbaI TGATCA 2 cut(s) 1104, 1803
FblI GTMKAC 2 cut(s) 482, 1614
Fnu4HI GCNGC 8 cut(s) 77, 148, 449, 783, 1126, 1149, 1745, 1871
FokI GGATG 3 cut(s) 986, 1154, 1382
Fsp4HI GCNGC 8 cut(s) 77, 148, 449, 783, 1126, 1149, 1745, 1871
FspBI CTAG 5 cut(s) 492, 720, 1001, 1014, 1493
FspI TGCGCA 1 cut(s) 1512
GlaI GCGC 2 cut(s) 945, 1512
GluI GCNGC 8 cut(s) 77, 148, 449, 783, 1126, 1149, 1745, 1871
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 2 cut(s) 762, 1078
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 3 cut(s) 423, 1376, 1472
HapII CCGG 3 cut(s) 767, 1233, 1650
HhaI GCGC 2 cut(s) 946, 1513
Hin6I GCGC 2 cut(s) 944, 1511
HinP1I GCGC 2 cut(s) 944, 1511
HindIII AAGCTT 2 cut(s) 934, 1604
HinfI GANTC 9 cut(s) 281, 495, 549, 634, 980, 986, 1004, 1222, 1537
HpaII CCGG 3 cut(s) 767, 1233, 1650
Hpy166II GTNNAC 6 cut(s) 483, 725, 1051, 1423, 1615, 1687
Hpy8I GTNNAC 6 cut(s) 483, 725, 1051, 1423, 1615, 1687
HpyAV CCTTC 7 cut(s) 20, 80, 106, 196, 624, 691, 753
HpyCH4III ACNGT 5 cut(s) 214, 458, 919, 1460, 1520
HpyCH4IV ACGT 3 cut(s) 120, 180, 1563
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 293, 658, 1031, 1478, 1502, 1625
HpySE526I ACGT 3 cut(s) 120, 180, 1563
HspAI GCGC 2 cut(s) 944, 1511
Ksp22I TGATCA 2 cut(s) 1104, 1803
Kzo9I GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
LmnI GCTCC 3 cut(s) 1097, 1414, 1573
Lsp1109I GCAGC 6 cut(s) 88, 134, 460, 769, 1135, 1882
LweI GCATC 2 cut(s) 435, 607
MaeI CTAG 5 cut(s) 492, 720, 1001, 1014, 1493
MaeII ACGT 3 cut(s) 120, 180, 1563
MaeIII GTNAC 7 cut(s) 107, 181, 322, 566, 574, 1442, 1520
MalI GATC 8 cut(s) 65, 193, 1106, 1114, 1595, 1758, 1805, 1843
MbiI CCGCTC 1 cut(s) 1409
MboI GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
MflI RGATCY 3 cut(s) 1112, 1756, 1841
MhlI GDGCHC 2 cut(s) 1630, 1689
MlyI GAGTC 4 cut(s) 290, 489, 628, 1013
MmeI TCCRAC 4 cut(s) 1322, 1347, 1528, 1617
MseI TTAA 4 cut(s) 704, 1245, 1386, 1716
MspA1I CMGCKG 4 cut(s) 147, 782, 1505, 1946
MspI CCGG 3 cut(s) 767, 1233, 1650
MspR9I CCNGG 2 cut(s) 1234, 1839
MvaI CCWGG 1 cut(s) 1839
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 7 cut(s) 153, 293, 658, 1031, 1478, 1502, 1625
NciI CCSGG 1 cut(s) 1234
NdeII GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
NlaIV GGNNCC 3 cut(s) 1291, 1569, 1758
NmuCI GTSAC 3 cut(s) 181, 322, 1520
NsbI TGCGCA 1 cut(s) 1512
PagI TCATGA 1 cut(s) 561
PceI AGGCCT 1 cut(s) 423
PfeI GAWTC 5 cut(s) 549, 980, 986, 1222, 1537
PkrI GCNGC 8 cut(s) 78, 149, 450, 784, 1127, 1150, 1746, 1872
PleI GAGTC 4 cut(s) 289, 489, 628, 1012
PpsI GAGTC 4 cut(s) 289, 489, 628, 1012
Ppu21I YACGTR 1 cut(s) 1564
Psp6I CCWGG 1 cut(s) 1837
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 1837
PspN4I GGNNCC 3 cut(s) 1291, 1569, 1758
PspPI GGNCC 2 cut(s) 1289, 1470
PsuI RGATCY 3 cut(s) 1112, 1756, 1841
PvuII CAGCTG 3 cut(s) 147, 782, 1505
RsaI GTAC 6 cut(s) 347, 490, 1277, 1562, 1577, 1963
RsaNI GTAC 6 cut(s) 346, 489, 1276, 1561, 1576, 1962
SaqAI TTAA 4 cut(s) 704, 1245, 1386, 1716
SatI GCNGC 8 cut(s) 77, 148, 449, 783, 1126, 1149, 1745, 1871
Sau3AI GATC 8 cut(s) 63, 191, 1104, 1112, 1593, 1756, 1803, 1841
Sau96I GGNCC 2 cut(s) 1289, 1470
ScaI AGTACT 2 cut(s) 347, 1577
SchI GAGTC 4 cut(s) 290, 489, 628, 1013
ScrFI CCNGG 2 cut(s) 1234, 1839
SduI GDGCHC 2 cut(s) 1630, 1689
SfaNI GCATC 2 cut(s) 435, 607
SfcI CTRYAG 1 cut(s) 959
SinI GGWCC 1 cut(s) 1289
SmlI CTYRAG 4 cut(s) 947, 1294, 1782, 1879
SmoI CTYRAG 4 cut(s) 947, 1294, 1782, 1879
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 8 cut(s) 285, 755, 889, 1125, 1407, 1664, 1744, 1946
SspMI CTAG 5 cut(s) 492, 720, 1001, 1014, 1493
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 1232, 1837
StyI CCWWGG 1 cut(s) 1936
TaaI ACNGT 5 cut(s) 214, 458, 919, 1460, 1520
TaiI ACGT 3 cut(s) 123, 183, 1566
TaqI TCGA 2 cut(s) 125, 788
TatI WGTACW 2 cut(s) 345, 1575
TauI GCSGC 2 cut(s) 1128, 1747
TfiI GAWTC 5 cut(s) 549, 980, 986, 1222, 1537
Tru1I TTAA 4 cut(s) 704, 1245, 1386, 1716
Tru9I TTAA 4 cut(s) 704, 1245, 1386, 1716
TscAI CASTG 4 cut(s) 217, 505, 1465, 1905
TseFI GTSAC 3 cut(s) 181, 322, 1520
TseI GCWGC 6 cut(s) 76, 147, 448, 782, 1148, 1870
Tsp45I GTSAC 3 cut(s) 181, 322, 1520
TspDTI ATGAA 9 cut(s) 12, 99, 368, 735, 990, 1178, 1737, 1741, 1871
TspRI CASTG 4 cut(s) 217, 505, 1465, 1905
VneI GTGCAC 1 cut(s) 1685
VpaK11BI GGWCC 1 cut(s) 1289
XagI CCTNNNNNAGG 1 cut(s) 84
XapI RAATTY 3 cut(s) 475, 1055, 1483
XbaI TCTAGA 2 cut(s) 1000, 1013
XmiI GTMKAC 2 cut(s) 482, 1614
XspI CTAG 5 cut(s) 492, 720, 1001, 1014, 1493
ZrmI AGTACT 2 cut(s) 347, 1577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.