AT2G24860
ERF Family

DnaJ Hsp40 cysteine-rich domain superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015264
Physical Location & Seq
Reverse (-)
10586643 .. 10588416
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24860.1

Sequence Viewer

Length: 435 bp
ATGACGATTTGCATGTGTTGCGATTCACATCTCGTAGCGAAATCGATTCTAAATCCATGGAATTCTCCTAGGATAACGAAGCTAGGTTTCGTACCAGTCGTTCGCCGTTTTCCAGCTACTACTACCGTCAAGGCTTCGGCGGTGGATTCACCTGAGAGTTCTTCAAATTTCGCCAAGCGTATGGATCAAGCTTGGATTATCTCACAGCAACCAAGTCCTGTTGGATGTTCATCGTGCAATTCAAAGGGTCATGTGGAATGCAAATGGTGTGCGGGTACAGGATTCTTCATCCTTGGTGATAACATGCTTTGCCAGGTTCCCTCAAGGAATACTTCATGTGTAATCTGCTCTGGACAGGGTTCTGCTAGCTGTAGCGATTGCAAAGGAACGGGGTTTCGTGCCAAGTGGTTGGAAAAACCTCCAGTGCCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.47

Weight (kDa)

8.9

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24860
fragaria_vesca FvH4_2g41340 FvH4_2g41340
malus_domestica MD08G1052200.v1.1 MD15G1043300.v1.1
prunus_persica Prupe.1G396700_v2.0.a1
pyrus_communis pycom15g04020
rosa_chinensis RchiOBHm_Chr6g0299201
rosa_laevigata RLG00000011454
rosa_roxburghii Rroxscaffold_7G00168920
rosa_rugosa Rorug06G0286200
rosa_samantha Rh6AG397100 Rh6BG405800 Rh6CG411900 Rh6DG398600
rosa_wichuraiana Rw6G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 272
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 61, 166
AfaI GTAC 2 cut(s) 93, 277
AgsI TTSAA 2 cut(s) 165, 243
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 4 cut(s) 82, 116, 191, 369
AluI AGCT 4 cut(s) 82, 116, 191, 369
AlwI GGATC 1 cut(s) 192
ApoI RAATTY 2 cut(s) 61, 166
AspA2I CCTAGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 141, 308
AsuNHI GCTAGC 1 cut(s) 365
AvrII CCTAGG 1 cut(s) 68
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 314
BfaI CTAG 3 cut(s) 69, 83, 366
BfmI CTRYAG 1 cut(s) 370
BlnI CCTAGG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 314
BmtI GCTAGC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 44
BsaBI GATNNNNATC 2 cut(s) 27, 229
BsaJI CCNNGG 3 cut(s) 56, 68, 292
Bse1I ACTGG 2 cut(s) 95, 422
Bse8I GATNNNNATC 2 cut(s) 27, 229
BseBI CCWGG 1 cut(s) 314
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 56, 68, 292
BseGI GGATG 2 cut(s) 230, 288
BseJI GATNNNNATC 2 cut(s) 27, 229
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 95, 422
BshVI ATCGAT 1 cut(s) 44
BsmI GAATGC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 140, 272
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 369
BspPI GGATC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 95, 422
BssECI CCNNGG 3 cut(s) 56, 68, 292
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 3 cut(s) 56, 68, 292
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 230, 288
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 2 cut(s) 16, 307
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 370
BstXI CCANNNNNNTGG 2 cut(s) 181, 409
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 230, 288
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 367
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 92, 276
CviAII CATG 5 cut(s) 13, 57, 251, 304, 336
CviJI RGCY 5 cut(s) 82, 116, 134, 191, 369
CviKI_1 RGCY 5 cut(s) 82, 116, 134, 191, 369
CviQI GTAC 2 cut(s) 92, 276
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco130I CCWWGG 3 cut(s) 56, 68, 292
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 3 cut(s) 56, 68, 292
ErhI CCWWGG 3 cut(s) 56, 68, 292
FaeI CATG 5 cut(s) 16, 60, 254, 307, 339
FaiI YATR 7 cut(s) 14, 58, 182, 252, 305, 337, 433
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 5 cut(s) 12, 56, 250, 303, 335
FauI CCCGC 1 cut(s) 265
FokI GGATG 2 cut(s) 237, 275
FspBI CTAG 3 cut(s) 69, 83, 366
GsuI CTGGAG 1 cut(s) 405
Hin1II CATG 5 cut(s) 16, 60, 254, 307, 339
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 4 cut(s) 23, 46, 146, 282
HphI GGTGA 2 cut(s) 141, 308
Hpy188III TCNNGA 1 cut(s) 351
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 12, 237, 261, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 5 cut(s) 16, 60, 254, 307, 339
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 9 cut(s) 108, 126, 165, 231, 264, 299, 326, 336, 341
MaeI CTAG 3 cut(s) 69, 83, 366
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 153, 277
MluCI AATT 3 cut(s) 61, 166, 238
MmeI TCCRAC 2 cut(s) 202, 390
MnlI CCTC 2 cut(s) 331, 429
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 56
NdeII GATC 1 cut(s) 184
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 5 cut(s) 16, 60, 254, 307, 339
NlaIV GGNNCC 1 cut(s) 318
NspI RCATGY 2 cut(s) 16, 307
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 4 cut(s) 23, 46, 146, 282
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 318
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
RsaI GTAC 2 cut(s) 93, 277
RsaNI GTAC 2 cut(s) 92, 276
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 314
SetI ASST 8 cut(s) 84, 88, 118, 154, 193, 318, 371, 421
SfcI CTRYAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 61, 166, 238
SsiI CCGC 2 cut(s) 140, 272
SspMI CTAG 3 cut(s) 69, 83, 366
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 3 cut(s) 56, 68, 292
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 44
TasI AATT 3 cut(s) 61, 166, 238
TfiI GAWTC 4 cut(s) 23, 46, 146, 282
TscAI CASTG 1 cut(s) 429
TspDTI ATGAA 3 cut(s) 219, 277, 324
TspRI CASTG 1 cut(s) 429
XapI RAATTY 2 cut(s) 61, 166
XceI RCATGY 2 cut(s) 16, 307
XmaJI CCTAGG 1 cut(s) 68
XspI CTAG 3 cut(s) 69, 83, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.