FvH4_2g41340
ERF Family

DnaJ Hsp40 cysteine-rich domain superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015264
Physical Location & Seq
Forward (+)
29253275 .. 29255379
2105 bp
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UTR
Exon/CDS
Intron
FvH4_2g41340.t2

Sequence Viewer

Length: 465 bp
ATGACTATTAGCCGTATGTGTTGCAGGACATCGATTGTGGCCAATCCGATTCACAGCGATGGTTTTGTATCGTTGAGCACCGCGCTAAATCGTGTCAGAGTGTCTGTACCTTATGGTTCAAGAACCAGGCCTCTCCGCAATTCAAGGGTTAGTGGCGTGCGAGCTTCCGCTGTGGAATCCTATGAAGGCTCCTCTAATTTCGTTAATCGCATGGAAAAAGCCTGGTTAATCTCCAAGCAACCAAGGCCTGTTGCCTGTTCTTCTTGCAACTCAAATGGGCATATTGAATGCAAATGGTGTGCTGGCACAGGCTTCTTTGTTCTTGGCGATAACATGCTTTGTCAAGTCCCTTCAAAAAGTACTAGTTGTGTCATATGTACTGGGAAGGGATCAATGCGATGCTCAGATTGTAAGGGAACAGGTTTTCGTGCCAAGTGGTTAGGACAGCCTCCTATTTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.69

Weight (kDa)

9.75

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24860
fragaria_vesca FvH4_2g41340 FvH4_2g41340
malus_domestica MD08G1052200.v1.1 MD15G1043300.v1.1
prunus_persica Prupe.1G396700_v2.0.a1
pyrus_communis pycom15g04020
rosa_chinensis RchiOBHm_Chr6g0299201
rosa_laevigata RLG00000011454
rosa_roxburghii Rroxscaffold_7G00168920
rosa_rugosa Rorug06G0286200
rosa_samantha Rh6AG397100 Rh6BG405800 Rh6CG411900 Rh6DG398600
rosa_wichuraiana Rw6G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 81, 136, 168
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 3 cut(s) 108, 361, 379
AgsI TTSAA 4 cut(s) 120, 144, 287, 354
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 2 cut(s) 125, 221
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 80
AlwI GGATC 1 cut(s) 397
AoxI GGCC 3 cut(s) 39, 128, 245
AspLEI GCGC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 80
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 127, 223
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 1 cut(s) 363
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 127, 223
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 127, 223
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 2 cut(s) 127, 223
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 41, 130, 247
BshVI ATCGAT 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 41, 130, 247
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 389
BspACI CCGC 3 cut(s) 81, 136, 168
BspANI GGCC 3 cut(s) 41, 130, 247
BspCNI CTCAG 1 cut(s) 416
BspDI ATCGAT 1 cut(s) 32
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 127, 223
BstC8I GCNNGC 3 cut(s) 158, 162, 304
BstDEI CTNAG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 392
BstMBI GATC 1 cut(s) 389
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 2 cut(s) 127, 223
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 125, 221
BstUI CGCG 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 3 cut(s) 41, 130, 247
BsuTUI ATCGAT 1 cut(s) 32
BtgZI GCGATG 2 cut(s) 72, 412
Cac8I GCNNGC 3 cut(s) 158, 162, 304
CfoI GCGC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 32
Csp6I GTAC 3 cut(s) 107, 360, 378
CviAII CATG 2 cut(s) 211, 334
CviJI RGCY 9 cut(s) 12, 41, 130, 164, 189, 221, 247, 312, 448
CviKI_1 RGCY 9 cut(s) 12, 41, 130, 164, 189, 221, 247, 312, 448
CviQI GTAC 3 cut(s) 107, 360, 378
DdeI CTNAG 1 cut(s) 403
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 242
Eco147I AGGCCT 2 cut(s) 130, 247
EcoRII CCWGG 2 cut(s) 125, 221
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 214, 337
FaiI YATR 8 cut(s) 17, 114, 183, 212, 282, 335, 374, 376
FaqI GGGAC 1 cut(s) 332
FatI CATG 2 cut(s) 210, 333
FauNDI CATATG 1 cut(s) 374
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 84
HaeIII GGCC 3 cut(s) 41, 130, 247
HhaI GCGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 214, 337
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 2 cut(s) 49, 176
Hpy188I TCNGA 3 cut(s) 48, 98, 406
Hpy188III TCNNGA 1 cut(s) 120
HpyAV CCTTC 3 cut(s) 179, 360, 379
HpyCH4V TGCA 3 cut(s) 24, 267, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 403
Hsp92II CATG 2 cut(s) 214, 337
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 194
LweI GCATC 1 cut(s) 389
MaeI CTAG 1 cut(s) 363
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 2 cut(s) 139, 196
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 3 cut(s) 141, 202, 459
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 204, 227
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 127, 223
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 2 cut(s) 127, 223
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeI CATATG 1 cut(s) 374
NdeII GATC 1 cut(s) 389
NlaIII CATG 2 cut(s) 214, 337
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 337
PceI AGGCCT 2 cut(s) 130, 247
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 49, 176
Psp6I CCWGG 2 cut(s) 125, 221
PspGI CCWGG 2 cut(s) 125, 221
PspN4I GGNNCC 1 cut(s) 190
RsaI GTAC 3 cut(s) 108, 361, 379
RsaNI GTAC 3 cut(s) 107, 360, 378
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 204, 227
Sau3AI GATC 1 cut(s) 389
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 127, 223
SduI GDGCHC 1 cut(s) 80
SetI ASST 3 cut(s) 112, 166, 424
SfaNI GCATC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 57
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 2 cut(s) 139, 196
SseBI AGGCCT 2 cut(s) 130, 247
SsiI CCGC 3 cut(s) 81, 136, 168
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 2 cut(s) 130, 247
StyD4I CCNGG 2 cut(s) 125, 221
StyI CCWWGG 1 cut(s) 242
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 139, 196
TatI WGTACW 2 cut(s) 359, 377
TfiI GAWTC 2 cut(s) 49, 176
Tru1I TTAA 2 cut(s) 204, 227
Tru9I TTAA 2 cut(s) 204, 227
TspDTI ATGAA 1 cut(s) 198
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.