Rorug06G0286200
ERF Family

DnaJ Hsp40 cysteine-rich domain superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015264
Physical Location & Seq
Forward (+)
43638131 .. 43641450
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0286200.1

Sequence Viewer

Length: 432 bp
ATGGGTCGTCGACTGTGCCAAGTCTGCAACGAAGCTCAATCCAAGTACAAGTGTCCCTCATGCCGTGCGCCTTATTGTTCTGTTCCCTGTTTCAAAAAACACAAAGAAACCCCATGCGTTTTGCCAGAGGAGAAACCAAAAAGCGCATCTGTTTTGCCAGTGCCATCTGAGGAAAAACCAACTGCTGCTCCAGAATCAGTGGTCAAAAGGCCAATAACTGTTACTGAACCAAGTGCCGTGCTGGAAAGGCAGCAACTAGAGGCTATAGCTTCTTCCAGTGAAATTCGCGATGCTTTGAAAGATGAAAGTCTTCAAAGACTCATTGAGAGTATAGATTGTTCTCCAGATGCAGAGAATGAACTTGATAAAGCTATGGATGTGGAGATGTTTCGAATATTTACTGACAAGATCCTATCTACCATCAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

5.33

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 3 - 32 2e-11 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24860
fragaria_vesca FvH4_2g41340 FvH4_2g41340
malus_domestica MD08G1052200.v1.1 MD15G1043300.v1.1
prunus_persica Prupe.1G396700_v2.0.a1
pyrus_communis pycom15g04020
rosa_chinensis RchiOBHm_Chr6g0299201
rosa_laevigata RLG00000011454
rosa_roxburghii Rroxscaffold_7G00168920
rosa_rugosa Rorug06G0286200
rosa_samantha Rh6AG397100 Rh6BG405800 Rh6CG411900 Rh6DG398600
rosa_wichuraiana Rw6G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AccII CGCG 1 cut(s) 288
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 3 cut(s) 94, 298, 314
AluBI AGCT 3 cut(s) 35, 269, 371
AluI AGCT 3 cut(s) 35, 269, 371
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 185, 250
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 2 cut(s) 70, 146
AsuII TTCGAA 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 172, 262
BccI CCATC 2 cut(s) 172, 428
BceAI ACGGC 2 cut(s) 48, 221
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 186, 251
BlsI GCNGC 2 cut(s) 187, 252
BmsI GCATC 3 cut(s) 155, 280, 337
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 2 cut(s) 174, 327
Bpu14I TTCGAA 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse1I ACTGG 2 cut(s) 158, 276
BseGI GGATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 158, 276
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 172, 262
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 211
BslFI GGGAC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 391
Bsp143I GATC 1 cut(s) 408
Bsp68I TCGCGA 1 cut(s) 288
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 288
BspPI GGATC 1 cut(s) 403
BspT104I TTCGAA 1 cut(s) 391
BsrI ACTGG 2 cut(s) 158, 276
BssMI GATC 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 15, 220
BstBI TTCGAA 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 2 cut(s) 70, 146
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 2 cut(s) 24, 247
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 172, 262
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 3 cut(s) 165, 204, 283
BtuMI TCGCGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 70, 146
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 60, 114
CviJI RGCY 5 cut(s) 35, 211, 263, 269, 371
CviKI_1 RGCY 5 cut(s) 35, 211, 263, 269, 371
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
FaeI CATG 2 cut(s) 63, 117
FaiI YATR 6 cut(s) 61, 115, 266, 332, 374, 430
FaqI GGGAC 1 cut(s) 39
FatI CATG 2 cut(s) 59, 113
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 186, 251
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 186, 251
FspBI CTAG 1 cut(s) 257
GlaI GCGC 2 cut(s) 69, 145
GluI GCNGC 2 cut(s) 186, 251
GsuI CTGGAG 2 cut(s) 174, 327
HaeIII GGCC 1 cut(s) 211
HhaI GCGC 2 cut(s) 70, 146
Hin1II CATG 2 cut(s) 63, 117
Hin6I GCGC 2 cut(s) 68, 144
HinP1I GCGC 2 cut(s) 68, 144
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HinfI GANTC 2 cut(s) 194, 318
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 191, 287, 344
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 12
HpyCH4III ACNGT 2 cut(s) 15, 220
HpyCH4V TGCA 2 cut(s) 27, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 247
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 63, 117
HspAI GCGC 2 cut(s) 68, 144
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 7 cut(s) 100, 138, 171, 204, 227, 289, 357
Lsp1109I GCAGC 2 cut(s) 172, 262
LweI GCATC 3 cut(s) 155, 280, 337
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 2 cut(s) 264, 302
MflI RGATCY 1 cut(s) 408
MluCI AATT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 4 cut(s) 67, 121, 163, 253
MroXI GAANNNNTTC 1 cut(s) 309
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 24, 247
NdeII GATC 1 cut(s) 408
NlaIII CATG 2 cut(s) 63, 117
NruI TCGCGA 1 cut(s) 288
NspV TTCGAA 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 187, 252
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PsuI RGATCY 1 cut(s) 408
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 9
SatI GCNGC 2 cut(s) 186, 251
Sau3AI GATC 1 cut(s) 408
SchI GAGTC 1 cut(s) 312
SetI ASST 3 cut(s) 37, 271, 373
SfaNI GCATC 3 cut(s) 155, 280, 337
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 391
Sse9I AATT 1 cut(s) 282
SspI AATATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 15, 220
TaqI TCGA 2 cut(s) 10, 391
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 3 cut(s) 165, 204, 283
TseI GCWGC 2 cut(s) 185, 250
TspDTI ATGAA 2 cut(s) 318, 372
TspRI CASTG 3 cut(s) 165, 204, 283
XapI RAATTY 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.