Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015264

Physical Location & Seq

Genomic Coordinates Forward (+)

3008726 .. 3011082

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1043300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGAGCTGTGTGTGCTGCAGGCCGTCGATTGTGGCCAGACCGATTCAAAACGACGGCTTTCGAACATCGTTGGAAGCTCTAAATCGCGTTGGGGTTGTCGTACCTTACGGTACAAGCACAAGGTCCTTCGGAAGGGTTTGCGGCGTGCGAGCTTCCGCTGTGGACTCGTATGAAAGTTCATCGAATTTCGCTAATCGCATGGAAAAAGCTTGGTTAATCTCTAAGCAACCGAGGCCTATTGCTTGTTCTTCTTGCAACTCAAATGGTCATACTGAGTGCAAATGGTGTGCGGGTACAGGCTTCTTTATTCTCGGCGATAACATGCTTTGCCAAGTCTCTCCGAAAAGTACAACTTGTGTTATTTGTACCGGAAAGGGTTCAATGCGTTGTTCCGACTGTAAAGGAACGGGCTTTCGTGCCAAGTGGTTAGGACAACCACCTATTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.23

Weight (kDa)

9.27

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24860
fragaria_vesca	FvH4_2g41340 FvH4_2g41340
malus_domestica	MD08G1052200.v1.1 MD15G1043300.v1.1
prunus_persica	Prupe.1G396700_v2.0.a1
pyrus_communis	pycom15g04020
rosa_chinensis	RchiOBHm_Chr6g0299201
rosa_laevigata	RLG00000011454
rosa_roxburghii	Rroxscaffold_7G00168920
rosa_rugosa	Rorug06G0286200
rosa_samantha	Rh6AG397100 Rh6BG405800 Rh6CG411900 Rh6DG398600
rosa_wichuraiana	Rw6G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	144, 159, 293
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	5 cut(s)	105, 115, 298, 352, 370
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	50, 384
AluBI	AGCT	4 cut(s)	9, 80, 155, 212
AluI	AGCT	4 cut(s)	9, 80, 155, 212
Alw26I	GTCTC	1 cut(s)	343
AoxI	GGCC	3 cut(s)	23, 36, 236
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	126
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	5
BceAI	ACGGC	2 cut(s)	10, 73
BcoDI	GTCTC	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	2 cut(s)	19, 145
BlsI	GCNGC	2 cut(s)	20, 146
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	25, 38, 238
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	25, 38, 238
Bsp119I	TTCGAA	1 cut(s)	64
BspACI	CCGC	3 cut(s)	144, 159, 293
BspANI	GGCC	3 cut(s)	25, 38, 238
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	113, 401
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	7, 23, 149, 153
BstDEI	CTNAG	2 cut(s)	225, 276
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 235
BstNSI	RCATGY	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	25, 38, 238
Cac8I	GCNNGC	4 cut(s)	7, 23, 149, 153
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	5 cut(s)	104, 114, 297, 351, 369
CviAII	CATG	2 cut(s)	202, 325
CviQI	GTAC	5 cut(s)	104, 114, 297, 351, 369
DdeI	CTNAG	2 cut(s)	225, 276
EaeI	YGGCCR	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	126
FaeI	CATG	2 cut(s)	205, 328
FaiI	YATR	4 cut(s)	174, 203, 273, 326
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	2 cut(s)	201, 324
FauI	CCCGC	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	19, 145
Fsp4HI	GCNGC	2 cut(s)	19, 145
GluI	GCNGC	2 cut(s)	19, 145
HaeIII	GGCC	3 cut(s)	25, 38, 238
HapII	CCGG	1 cut(s)	372
Hin1II	CATG	2 cut(s)	205, 328
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	46, 167
HpaII	CCGG	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	134, 345, 397
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	31, 59
HpyAV	CCTTC	2 cut(s)	129, 139
HpyCH4III	ACNGT	2 cut(s)	113, 401
HpyCH4V	TGCA	3 cut(s)	21, 258, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 235
HpyF3I	CTNAG	2 cut(s)	225, 276
Hsp92II	CATG	2 cut(s)	205, 328
LpnPI	CCDG	4 cut(s)	7, 52, 285, 385
Lsp1109I	GCAGC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	54, 420
MnlI	CCTC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	15, 235
NlaIII	CATG	2 cut(s)	205, 328
NmeAIII	GCCGAG	1 cut(s)	294
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	20, 146
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	23
RsaI	GTAC	5 cut(s)	105, 115, 298, 352, 370
RsaNI	GTAC	5 cut(s)	104, 114, 297, 351, 369
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	2 cut(s)	19, 145
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	161
SetI	ASST	7 cut(s)	11, 82, 109, 128, 157, 214, 445
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	1 cut(s)	187
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	3 cut(s)	144, 159, 293
StuI	AGGCCT	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	113, 401
TaqI	TCGA	3 cut(s)	29, 64, 185
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	187
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	171, 189
VpaK11BI	GGWCC	1 cut(s)	126
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.