Rh6AG397100
ERF Family

DnaJ Hsp40 cysteine-rich domain superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015264
Physical Location & Seq
Reverse (-)
59616145 .. 59618322
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG397100.1

Sequence Viewer

Length: 462 bp
ATGACGAGCTGTATGTGTTGCAGGTCATCGATTGTGGCCAATCCGATTCACAACGATGGTTTTGTGTCGTTGACCACGGCTCTAAGCCGTGTTGGGGTTTCTGTTCCTTATGGTTCAAGAACCAGGTCCCTCGGGAATTCAAGGGTTCGCGGCGTGCGAGCTTCAGCTGTGGAATCCTATGAAGGCTCCTCTAGTTTTGTTAATCGCATGGAGAAAGCCTGGTTAATCTCTAAGCAACCGAGGCCTGTTGCTTGTTCTTCTTGCAACTCAAATGGGCATATTGAATGCAAATGGTGTGCTGGTACGGGCTTCTTTGTTCTTGGCGATAACATGCTTTGCCAAGTCCCTTCAAAAAGTACTAGCTGTGTTATATGTACTGGAAAGGGAGCAATGCGATGCTCAGATTGTAAGGGAACAGGTTTTCGTGCCAAGTGGTTAGGACAGCCTCCTATTTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.34

Weight (kDa)

9.44

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24860
fragaria_vesca FvH4_2g41340 FvH4_2g41340
malus_domestica MD08G1052200.v1.1 MD15G1043300.v1.1
prunus_persica Prupe.1G396700_v2.0.a1
pyrus_communis pycom15g04020
rosa_chinensis RchiOBHm_Chr6g0299201
rosa_laevigata RLG00000011454
rosa_roxburghii Rroxscaffold_7G00168920
rosa_rugosa Rorug06G0286200
rosa_samantha Rh6AG397100 Rh6BG405800 Rh6CG411900 Rh6DG398600
rosa_wichuraiana Rw6G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 3 cut(s) 304, 358, 376
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 4 cut(s) 117, 141, 284, 351
AjnI CCWGG 2 cut(s) 122, 218
AluBI AGCT 4 cut(s) 9, 161, 167, 363
AluI AGCT 4 cut(s) 9, 161, 167, 363
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 36, 242
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 126
BalI TGGCCA 1 cut(s) 38
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 72, 93
BciT130I CCWGG 2 cut(s) 124, 220
BfaI CTAG 2 cut(s) 192, 360
BfuAI ACCTGC 1 cut(s) 12
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 2 cut(s) 124, 220
Bme18I GGWCC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 128, 187
BmrFI CCNGG 2 cut(s) 124, 220
BmsI GCATC 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 75, 130, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 2 cut(s) 124, 220
BseCI ATCGAT 1 cut(s) 29
BseDI CCNNGG 3 cut(s) 75, 130, 239
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 38, 244
BshVI ATCGAT 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 2 cut(s) 112, 329
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 112, 329
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 38, 244
BsoBI CYCGRG 1 cut(s) 131
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 38, 244
BspCNI CTCAG 1 cut(s) 413
BspDI ATCGAT 1 cut(s) 29
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 128, 187
BspMI ACCTGC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 75, 130, 239
Bst2UI CCWGG 2 cut(s) 124, 220
BstC8I GCNNGC 2 cut(s) 155, 159
BstDEI CTNAG 3 cut(s) 83, 231, 400
BstDSI CCRYGG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 2 cut(s) 124, 220
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 122, 218
BstUI CGCG 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 29
BsuRI GGCC 2 cut(s) 38, 244
BsuTUI ATCGAT 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 409
BveI ACCTGC 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 155, 159
Cfr13I GGNCC 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 29
CsiI ACCWGGT 1 cut(s) 122
Csp6I GTAC 3 cut(s) 303, 357, 375
CviAII CATG 2 cut(s) 208, 331
CviQI GTAC 3 cut(s) 303, 357, 375
DdeI CTNAG 3 cut(s) 83, 231, 400
EaeI YGGCCR 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 122, 218
FaeI CATG 2 cut(s) 211, 334
FaiI YATR 8 cut(s) 14, 111, 180, 209, 279, 332, 371, 373
FaqI GGGAC 2 cut(s) 112, 329
FatI CATG 2 cut(s) 207, 330
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 192, 360
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 38, 244
Hin1II CATG 2 cut(s) 211, 334
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 2 cut(s) 46, 173
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 45, 403
Hpy188III TCNNGA 2 cut(s) 117, 133
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 176, 357
HpyCH4V TGCA 3 cut(s) 21, 264, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 3 cut(s) 83, 231, 400
Hsp92II CATG 2 cut(s) 211, 334
LmnI GCTCC 2 cut(s) 191, 386
LpnPI CCDG 9 cut(s) 7, 109, 136, 205, 232, 258, 285, 363, 402
LweI GCATC 1 cut(s) 386
MabI ACCWGGT 1 cut(s) 122
MaeI CTAG 2 cut(s) 192, 360
MboII GAAGA 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 4 cut(s) 140, 199, 234, 456
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 201, 224
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 124, 220
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 2 cut(s) 124, 220
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 211, 334
NlaIV GGNNCC 2 cut(s) 128, 187
NspI RCATGY 1 cut(s) 334
PceI AGGCCT 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 46, 173
PkrI GCNGC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 122, 218
PspGI CCWGG 2 cut(s) 122, 218
PspN4I GGNNCC 2 cut(s) 128, 187
PspPI GGNCC 1 cut(s) 126
PspPPI RGGWCCY 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 3 cut(s) 304, 358, 376
RsaNI GTAC 3 cut(s) 303, 357, 375
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 201, 224
SatI GCNGC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 126
ScaI AGTACT 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 124, 220
SetI ASST 7 cut(s) 11, 26, 128, 163, 169, 365, 421
SexAI ACCWGGT 1 cut(s) 122
SfaNI GCATC 1 cut(s) 386
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 1 cut(s) 136
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 192, 360
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 122, 218
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 136
TatI WGTACW 2 cut(s) 356, 374
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 46, 173
Tru1I TTAA 2 cut(s) 201, 224
Tru9I TTAA 2 cut(s) 201, 224
TspDTI ATGAA 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 334
XspI CTAG 2 cut(s) 192, 360
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.