Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011311

Physical Location & Seq

Genomic Coordinates Reverse (-)

10792664 .. 10793832

Gene Structure 1169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCGATATTATACGCGTTGGTGGCGCGTGGAACGGTGGTTCTTGCGGAGTTAAGCACTACGTCCACGAACGCTAGCACGATCGCGAAGCAGATCCTTGAGAAGATCCCTGGTAACGGCGACAGCCACGTGTCATACTCTCAGGATCGTTACGTCTTCCACGTAAAACGTACTGATGGCCTCACCGTTCTTTGTATGGCTGATGAAGACGCCGGAAGGAGGATTCCATTTTCGTTTCTAGAGGATATTCATCAGAGGTTTGTTCGGACTTATGGCCGCGCAATTCATTCGGCACAAGCTTATGCTATGAATGATGAGTTCTCAAGAGTTCTTAACCAACAAATTGAGTATTACTCTAATGATCCTAATGCCGATACGATAAGTCGAATTAAGGGTGAAATGAATCAGGTGAGGGATGTTATGATAGAGAACATTGACAACATTCTTGATAGAGGTGAACGTCTTGAGCTTCTTGTCGATAAAACCGCGAACATGCAAGGGAATACCTTCCGATTCAGAAAGCAAACACGTCGTTTCAACAACACGGTGTGGTGGAGAAATTGCAAGCTCACGCTACTCTTAATACTAGTGTTGTTGGTGATCATATACATCGGTGTGGCCTTTGCTTGCCATGGACCAACTCTACCCTCTTGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030897 GO:0031090 GO:0031201 GO:0032940 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097305 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

219

Amino Acids

24.97

Weight (kDa)

8.35

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	3.8e-25	Regulated-SNARE-like domain
Synaptobrevin	PF00957	127 - 205	4.4e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25340 AT4G32150 AT5G11150 AT5G11150
fragaria_vesca	FvH4_2g28860 FvH4_2g28860
malus_domestica	MD08G1156200.v1.1 MD15G1126900.v1.1
prunus_persica	Prupe.1G482600_v2.0.a1
pyrus_communis	pycom08g12810 pycom15g11450
rosa_chinensis	RchiOBHm_Chr6g0297631
rosa_laevigata	RLG00000011575
rosa_multiflora	Rmu_sc0008915.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170300
rosa_rugosa	Rorug06G0274800
rosa_samantha	Rh6BG393400 Rh6CG399200 Rh6DG385800
rosa_wichuraiana	Rw6G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	17, 28, 86, 279, 488
AciI	CCGC	3 cut(s)	47, 277, 486
AclWI	GGATC	4 cut(s)	88, 100, 153, 356
AcoI	YGGCCR	1 cut(s)	274
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	2 cut(s)	116, 219
AflIII	ACRYGT	3 cut(s)	15, 129, 527
AgsI	TTSAA	1 cut(s)	538
AhlI	ACTAGT	1 cut(s)	586
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	299, 469, 568
AluI	AGCT	3 cut(s)	299, 469, 568
AlwI	GGATC	4 cut(s)	88, 100, 153, 356
AoxI	GGCC	3 cut(s)	178, 274, 618
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	2 cut(s)	28, 281
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	5 cut(s)	175, 407, 421, 467, 610
AsuNHI	GCTAGC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	635
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	148, 213
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	4 cut(s)	270, 304, 512, 546
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	600
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	3 cut(s)	75, 239, 587
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	635
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	78
BpiI	GAAGAC	2 cut(s)	148, 213
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpuEI	CTTGAG	3 cut(s)	119, 307, 485
BsaAI	YACGTR	2 cut(s)	130, 163
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	109, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 219
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	109, 631
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	116, 219
BseMII	CTCAG	1 cut(s)	155
Bsh1236I	CGCG	5 cut(s)	17, 28, 86, 279, 488
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	180, 276, 620
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	116, 219
BsnI	GGCC	3 cut(s)	180, 276, 620
Bsp143I	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
Bsp19I	CCATGG	1 cut(s)	631
Bsp68I	TCGCGA	1 cut(s)	86
BspACI	CCGC	3 cut(s)	47, 277, 486
BspANI	GGCC	3 cut(s)	180, 276, 620
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	5 cut(s)	17, 28, 86, 279, 488
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	4 cut(s)	88, 100, 153, 356
BssECI	CCNNGG	2 cut(s)	109, 631
BssMI	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	37, 187, 547
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	2 cut(s)	130, 163
BstC8I	GCNNGC	3 cut(s)	76, 566, 628
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	5 cut(s)	17, 28, 86, 279, 488
BstHHI	GCGC	2 cut(s)	28, 281
BstKTI	GATC	6 cut(s)	84, 96, 108, 148, 364, 603
BstMBI	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	5 cut(s)	17, 28, 86, 279, 488
BstV2I	GAAGAC	2 cut(s)	148, 213
BstX2I	RGATCY	2 cut(s)	93, 105
BstYI	RGATCY	2 cut(s)	93, 105
BsuRI	GGCC	3 cut(s)	180, 276, 620
BtgI	CCRYGG	1 cut(s)	631
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	421
BtuMI	TCGCGA	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	76, 566, 628
CfoI	GCGC	2 cut(s)	28, 281
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	2 cut(s)	493, 632
CviJI	RGCY	8 cut(s)	126, 180, 200, 276, 299, 469, 568, 620
CviKI_1	RGCY	8 cut(s)	126, 180, 200, 276, 299, 469, 568, 620
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	6 cut(s)	83, 95, 107, 147, 363, 602
DpnII	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
DraIII	CACNNNGTG	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	635
Eco72I	CACGTG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	2 cut(s)	496, 635
FatI	CATG	2 cut(s)	492, 631
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	3 cut(s)	75, 239, 587
GlaI	GCGC	2 cut(s)	27, 280
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	180, 276, 620
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	2 cut(s)	28, 281
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	496, 635
Hin6I	GCGC	2 cut(s)	26, 279
HinP1I	GCGC	2 cut(s)	26, 279
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	3 cut(s)	223, 403, 513
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	5 cut(s)	175, 407, 421, 467, 610
Hpy166II	GTNNAC	2 cut(s)	66, 458
Hpy188I	TCNGA	4 cut(s)	255, 267, 512, 518
Hpy188III	TCNNGA	6 cut(s)	85, 143, 239, 324, 446, 464
Hpy8I	GTNNAC	2 cut(s)	66, 458
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	2 cut(s)	210, 517
HpyCH4III	ACNGT	3 cut(s)	37, 187, 547
HpyCH4IV	ACGT	7 cut(s)	62, 129, 153, 162, 169, 460, 529
HpyCH4V	TGCA	2 cut(s)	496, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	7 cut(s)	62, 129, 153, 162, 169, 460, 529
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	496, 635
HspAI	GCGC	2 cut(s)	26, 279
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
LpnPI	CCDG	5 cut(s)	96, 123, 128, 226, 392
MaeI	CTAG	3 cut(s)	75, 239, 587
MaeII	ACGT	7 cut(s)	62, 129, 153, 162, 169, 460, 529
MaeIII	GTNAC	2 cut(s)	113, 149
MalI	GATC	6 cut(s)	83, 95, 107, 147, 363, 602
MboI	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
MboII	GAAGA	3 cut(s)	115, 148, 218
MflI	RGATCY	2 cut(s)	93, 105
MluCI	AATT	4 cut(s)	282, 342, 387, 559
MluI	ACGCGT	1 cut(s)	15
MnlI	CCTC	7 cut(s)	191, 213, 235, 249, 405, 446, 658
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	5 cut(s)	53, 333, 390, 581, 658
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	5 cut(s)	17, 28, 86, 279, 488
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	496, 635
NruI	TCGCGA	1 cut(s)	86
NspI	RCATGY	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	223, 403, 513
PkrI	GCNGC	1 cut(s)	278
Ple19I	CGATCG	1 cut(s)	84
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
Ppu21I	YACGTR	2 cut(s)	130, 163
Psp6I	CCWGG	1 cut(s)	109
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	93, 105
PvuI	CGATCG	1 cut(s)	84
RruI	TCGCGA	1 cut(s)	86
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	5 cut(s)	53, 333, 390, 581, 658
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	6 cut(s)	81, 93, 105, 145, 361, 600
Sau96I	GGNCC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	3 cut(s)	98, 322, 464
SmoI	CTYRAG	3 cut(s)	98, 322, 464
SpeI	ACTAGT	1 cut(s)	586
Sse9I	AATT	4 cut(s)	282, 342, 387, 559
SsiI	CCGC	3 cut(s)	47, 277, 486
SspMI	CTAG	3 cut(s)	75, 239, 587
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	3 cut(s)	37, 187, 547
TaiI	ACGT	7 cut(s)	65, 132, 156, 165, 172, 463, 532
TaqI	TCGA	3 cut(s)	5, 385, 477
TasI	AATT	4 cut(s)	282, 342, 387, 559
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	223, 403, 513
Tru1I	TTAA	5 cut(s)	53, 333, 390, 581, 658
Tru9I	TTAA	5 cut(s)	53, 333, 390, 581, 658
TspDTI	ATGAA	5 cut(s)	219, 239, 275, 323, 416
VpaK11BI	GGWCC	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	238
XceI	RCATGY	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	3 cut(s)	75, 239, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.