Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011311

Physical Location & Seq

Genomic Coordinates Reverse (-)

58118755 .. 58119776

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGATACTCTACACTCTCGTGGCGCGGGGATCGGTGGTGCTCGCCGAGTTCAGCGCCACGGCGACCAACGCCTCCGCCATCTCCGACTCCCACGTCTCTTACTCCCAAGATCGCTACATCTTCCACGTCAAGCGCACCGATGGCCTCACCGTCCTCTGTATGGCCGACGAGACCGCCGGCAGGAGAATGCCTTTTTCGTTTCTTGAAGACATCCACCAGCGATTCGTGAGGAGCTACGGCCGCGCCGTGCTCTCGGCTCAGGCCTACGGCATGAACGACGAGTTTTCTAGGGTTTTGAGCCAGCAAATGGAGTACTACTCCAACGATCCTAATGCGGATAGGATTAATCGACTCAAAGGCGAAATGAGCCAGGTGCGGAATGTGATGATTGAGAACATTGACAAAGTTTTGGACAGAGGTGATCGGTTGGAATTGCTGGTCGATAAAACTGCTAATATGCAAGGCAATACCTTTCGATTCCGAAAACAAGCTCGCCGTTTCAGAAGTACTGTTTGGTGGAGAAATGTTAAGCTCACGATTGCATTGATATTCCTTGTGCTATTGGTAGTTTATATCGTGATGGCCTTTGTTTGCCATGGCCTTTTACTGCCCACCTGCTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030897 GO:0031090 GO:0031201 GO:0032940 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097305 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

209

Amino Acids

23.92

Weight (kDa)

9.4

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	27 - 97	6.8e-21	Regulated-SNARE-like domain
Synaptobrevin	PF00957	115 - 194	4.7e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25340 AT4G32150 AT5G11150 AT5G11150
fragaria_vesca	FvH4_2g28860 FvH4_2g28860
malus_domestica	MD08G1156200.v1.1 MD15G1126900.v1.1
prunus_persica	Prupe.1G482600_v2.0.a1
pyrus_communis	pycom08g12810 pycom15g11450
rosa_chinensis	RchiOBHm_Chr6g0297631
rosa_laevigata	RLG00000011575
rosa_multiflora	Rmu_sc0008915.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170300
rosa_rugosa	Rorug06G0274800
rosa_samantha	Rh6BG393400 Rh6CG399200 Rh6DG385800
rosa_wichuraiana	Rw6G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	626
AasI	GACNNNNNNGTC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccII	CGCG	2 cut(s)	28, 246
AciI	CCGC	6 cut(s)	28, 78, 177, 244, 338, 379
AclWI	GGATC	2 cut(s)	40, 323
AcoI	YGGCCR	2 cut(s)	165, 241
AfaI	GTAC	2 cut(s)	317, 511
AfiI	CCNNNNNNNGG	3 cut(s)	163, 183, 310
AgsI	TTSAA	1 cut(s)	209
AjiI	CACGTC	2 cut(s)	97, 130
AjnI	CCWGG	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	237, 494, 535
AluI	AGCT	3 cut(s)	237, 494, 535
Alw21I	GWGCWC	2 cut(s)	45, 255
Alw26I	GTCTC	2 cut(s)	103, 167
AlwI	GGATC	2 cut(s)	40, 323
AoxI	GGCC	6 cut(s)	145, 165, 241, 264, 585, 601
AseI	ATTAAT	1 cut(s)	348
AspLEI	GCGC	4 cut(s)	28, 59, 138, 248
AsuHPI	GGTGA	2 cut(s)	142, 434
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	2 cut(s)	45, 255
BccI	CCATC	3 cut(s)	89, 137, 577
BceAI	ACGGC	5 cut(s)	78, 233, 256, 286, 483
BcgI	CGANNNNNNTGC	4 cut(s)	317, 351, 434, 468
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	103, 167
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	626
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
BmcAI	AGTACT	2 cut(s)	317, 511
Bme1390I	CCNGG	1 cut(s)	374
BmgBI	CACGTC	2 cut(s)	97, 130
BmrFI	CCNGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu10I	CCTNAGC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	60, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 183, 310
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	60, 598
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	163, 183, 310
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	28, 246
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	6 cut(s)	147, 167, 243, 266, 587, 603
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	45, 255
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	163, 183, 310
BsmAI	GTCTC	2 cut(s)	103, 167
BsmBI	CGTCTC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	6 cut(s)	147, 167, 243, 266, 587, 603
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	45, 255
Bsp143I	GATC	4 cut(s)	32, 112, 328, 424
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	6 cut(s)	28, 78, 177, 244, 338, 379
BspANI	GGCC	6 cut(s)	147, 167, 243, 266, 587, 603
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	28, 246
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	2 cut(s)	40, 323
BspTNI	GGTCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	60, 598
BssMI	GATC	4 cut(s)	32, 112, 328, 424
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	154, 514
BstC8I	GCNNGC	4 cut(s)	45, 181, 305, 496
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	2 cut(s)	60, 598
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	28, 246
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	4 cut(s)	28, 59, 138, 248
BstKTI	GATC	4 cut(s)	35, 115, 331, 427
BstMAI	GTCTC	2 cut(s)	103, 167
BstMBI	GATC	4 cut(s)	32, 112, 328, 424
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 144, 243, 369
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstUI	CGCG	2 cut(s)	28, 246
BstV2I	GAAGAC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstZI	CGGCCG	1 cut(s)	241
BsuRI	GGCC	6 cut(s)	147, 167, 243, 266, 587, 603
BtgI	CCRYGG	2 cut(s)	60, 598
BtrI	CACGTC	2 cut(s)	97, 130
BtsCI	GGATG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	626
Cac8I	GCNNGC	4 cut(s)	45, 181, 305, 496
CfoI	GCGC	4 cut(s)	28, 59, 138, 248
Cfr10I	RCCGGY	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	316, 510
CviAII	CATG	2 cut(s)	274, 599
CviQI	GTAC	2 cut(s)	316, 510
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	4 cut(s)	34, 114, 330, 426
DpnII	GATC	4 cut(s)	32, 112, 328, 424
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	2 cut(s)	165, 241
EagI	CGGCCG	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	598
Eco147I	AGGCCT	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	2 cut(s)	277, 602
FaiI	YATR	5 cut(s)	164, 275, 461, 576, 600
FatI	CATG	2 cut(s)	273, 598
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	4 cut(s)	27, 58, 137, 247
GluI	GCNGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	6 cut(s)	147, 167, 243, 266, 587, 603
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	4 cut(s)	28, 59, 138, 248
Hin1II	CATG	2 cut(s)	277, 602
Hin6I	GCGC	4 cut(s)	26, 57, 136, 246
HinP1I	GCGC	4 cut(s)	26, 57, 136, 246
HinfI	GANTC	4 cut(s)	89, 225, 354, 480
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	142, 434
Hpy188I	TCNGA	3 cut(s)	88, 485, 506
Hpy188III	TCNNGA	4 cut(s)	206, 229, 538, 580
Hpy99I	CGWCG	2 cut(s)	173, 284
HpyCH4III	ACNGT	2 cut(s)	154, 514
HpyCH4IV	ACGT	2 cut(s)	96, 129
HpyCH4V	TGCA	2 cut(s)	463, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 144, 243, 369
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	96, 129
Hsp92II	CATG	2 cut(s)	277, 602
HspAI	GCGC	4 cut(s)	26, 57, 136, 246
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	32, 112, 328, 424
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	169, 193, 233, 248, 317, 359, 386, 425
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	96, 129
MalI	GATC	4 cut(s)	34, 114, 330, 426
MboI	GATC	4 cut(s)	32, 112, 328, 424
MboII	GAAGA	2 cut(s)	115, 221
MhlI	GDGCHC	2 cut(s)	45, 255
MluCI	AATT	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	83, 348
MmeI	TCCRAC	3 cut(s)	111, 348, 411
MnlI	CCTC	5 cut(s)	85, 158, 167, 225, 413
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	2 cut(s)	348, 531
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	2 cut(s)	28, 246
MwoI	GCNNNNNNNGC	4 cut(s)	71, 144, 243, 369
NaeI	GCCGGC	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	4 cut(s)	32, 112, 328, 424
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	277, 602
NmeAIII	GCCGAG	2 cut(s)	73, 236
OliI	CACNNNNGTG	1 cut(s)	20
PaqCI	CACCTGC	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 276
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	225, 480
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	83, 348
PpsI	GAGTC	2 cut(s)	83, 348
PshBI	ATTAAT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
RsaI	GTAC	2 cut(s)	317, 511
RsaNI	GTAC	2 cut(s)	316, 510
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	348, 531
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	4 cut(s)	32, 112, 328, 424
ScaI	AGTACT	2 cut(s)	317, 511
SchI	GAGTC	2 cut(s)	83, 348
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	45, 255
SetI	ASST	9 cut(s)	99, 132, 239, 378, 424, 476, 496, 537, 620
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	434
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	6 cut(s)	28, 78, 177, 244, 338, 379
SspMI	CTAG	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	154, 514
TaiI	ACGT	2 cut(s)	99, 132
TaqI	TCGA	3 cut(s)	352, 444, 478
TasI	AATT	1 cut(s)	434
TatI	WGTACW	2 cut(s)	315, 509
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	225, 480
Tru1I	TTAA	2 cut(s)	348, 531
Tru9I	TTAA	2 cut(s)	348, 531
TspDTI	ATGAA	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	348
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	2 cut(s)	317, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.