Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011311

Physical Location & Seq

Genomic Coordinates Forward (+)

17401223 .. 17403646

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1156200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGATACTGTACGCGCTGGTAGCACGAGGATCGGTGGTGCTGGCGGAGTTCAGCGGCACGTCGACGAACGCGAGCACAATCTCCAGGCAAATTCTCGAAAAAATCCCCGGAGACAGCGACACCCACGTCTCCTACTCTCAAGATCGCTACATCTTCCACGTCAAGCGCACCGATGGCCTCACCGTCCTCTGTATGGCCGACGAGACCGCCGCCCGGAGAATGCCATTCGCTTTTCTTGAAGACATTCATCAGAGGTTCGTGAGGACCTACGGCCGCGCTGTTCATTCGGCCCAGGCTTACGGCATGAACGATGAGTTTTCTAGGGTTTTGAGCCAGCAGATGGAGTATTACTCCAATGATCCTAATGCCGATAGGATCAATCGACTCAAAGGCGAAATGAGCCAGGTGCGAAATGTTATGATTGAGAACATTGACAAAGTTTTGGAAAGAGGGGATCGCTTGGAGTTGCTGGTTGATAAAACTGCTAATATGCAAGGCAATACCTTCCGGTTCAGAAAGCAAGCTCGCCGTTTCAGAAGCACTGTGTGGTGGAGAAATGTTAAGCTCACGGTTGCATTGATATTCCTTGTGCTAATAGTAATTTATGTTGTGCTGGCTTTCGTTTGCCATGGCCTCGCACTACCCTCCTGCTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030897 GO:0031090 GO:0031201 GO:0032940 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097305 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

221

Amino Acids

25.2

Weight (kDa)

9.48

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	6.4e-24	Regulated-SNARE-like domain
Synaptobrevin	PF00957	126 - 205	2.1e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25340 AT4G32150 AT5G11150 AT5G11150
fragaria_vesca	FvH4_2g28860 FvH4_2g28860
malus_domestica	MD08G1156200.v1.1 MD15G1126900.v1.1
prunus_persica	Prupe.1G482600_v2.0.a1
pyrus_communis	pycom08g12810 pycom15g11450
rosa_chinensis	RchiOBHm_Chr6g0297631
rosa_laevigata	RLG00000011575
rosa_multiflora	Rmu_sc0008915.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170300
rosa_rugosa	Rorug06G0274800
rosa_samantha	Rh6BG393400 Rh6CG399200 Rh6DG385800
rosa_wichuraiana	Rw6G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	3 cut(s)	17, 74, 279
AciI	CCGC	5 cut(s)	47, 57, 210, 213, 277
AclWI	GGATC	4 cut(s)	40, 356, 386, 465
AcoI	YGGCCR	2 cut(s)	198, 274
AcsI	RAATTY	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	196, 216, 343
AgsI	TTSAA	2 cut(s)	242, 658
AjiI	CACGTC	3 cut(s)	63, 130, 163
AjnI	CCWGG	3 cut(s)	86, 294, 405
AluBI	AGCT	2 cut(s)	527, 568
AluI	AGCT	2 cut(s)	527, 568
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	108, 136, 200
AlwI	GGATC	4 cut(s)	40, 356, 386, 465
AoxI	GGCC	5 cut(s)	178, 198, 274, 291, 634
ApoI	RAATTY	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	3 cut(s)	19, 171, 281
AspS9I	GGNCC	2 cut(s)	267, 292
AsuC2I	CCSGG	2 cut(s)	111, 217
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	2 cut(s)	170, 337
BceAI	ACGGC	3 cut(s)	289, 319, 516
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	3 cut(s)	88, 296, 407
BcnI	CCSGG	2 cut(s)	111, 217
BcoDI	GTCTC	3 cut(s)	108, 136, 200
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	3 cut(s)	58, 213, 277
BlsI	GCNGC	3 cut(s)	59, 214, 278
Bme1390I	CCNGG	5 cut(s)	88, 111, 217, 296, 407
Bme18I	GGWCC	1 cut(s)	267
BmgBI	CACGTC	3 cut(s)	63, 130, 163
BmgT120I	GGNCC	2 cut(s)	267, 292
BmrFI	CCNGG	5 cut(s)	88, 111, 217, 296, 407
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	111, 217
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	109, 294, 631
BsaWI	WCCGGW	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 216, 343
BseBI	CCWGG	3 cut(s)	88, 296, 407
BseDI	CCNNGG	3 cut(s)	109, 294, 631
BseLI	CCNNNNNNNGG	3 cut(s)	196, 216, 343
BseX3I	CGGCCG	1 cut(s)	274
Bsh1236I	CGCG	3 cut(s)	17, 74, 279
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	5 cut(s)	180, 200, 276, 293, 636
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	111, 217, 511
BslI	CCNNNNNNNGG	3 cut(s)	196, 216, 343
BsmAI	GTCTC	3 cut(s)	108, 136, 200
BsmBI	CGTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	5 cut(s)	180, 200, 276, 293, 636
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	32, 145, 361, 378, 457
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	5 cut(s)	47, 57, 210, 213, 277
BspANI	GGCC	5 cut(s)	180, 200, 276, 293, 636
BspFNI	CGCG	3 cut(s)	17, 74, 279
BspPI	GGATC	4 cut(s)	40, 356, 386, 465
BspTNI	GGTCTC	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	109, 294, 631
BssMI	GATC	5 cut(s)	32, 145, 361, 378, 457
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	3 cut(s)	88, 296, 407
Bst4CI	ACNGT	4 cut(s)	12, 187, 547, 574
BstC8I	GCNNGC	6 cut(s)	45, 76, 338, 525, 529, 618
BstDSI	CCRYGG	1 cut(s)	631
BstFNI	CGCG	3 cut(s)	17, 74, 279
BstHHI	GCGC	3 cut(s)	19, 171, 281
BstKTI	GATC	5 cut(s)	35, 148, 364, 381, 460
BstMAI	GTCTC	3 cut(s)	108, 136, 200
BstMBI	GATC	5 cut(s)	32, 145, 361, 378, 457
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 177, 402
BstNI	CCWGG	3 cut(s)	88, 296, 407
BstSCI	CCNGG	5 cut(s)	86, 109, 215, 294, 405
BstUI	CGCG	3 cut(s)	17, 74, 279
BstV2I	GAAGAC	1 cut(s)	249
BstZI	CGGCCG	1 cut(s)	274
BsuRI	GGCC	5 cut(s)	180, 200, 276, 293, 636
BtgI	CCRYGG	1 cut(s)	631
BtrI	CACGTC	3 cut(s)	63, 130, 163
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	6 cut(s)	45, 76, 338, 525, 529, 618
CfoI	GCGC	3 cut(s)	19, 171, 281
Cfr13I	GGNCC	2 cut(s)	267, 292
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	307, 632
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	5 cut(s)	34, 147, 363, 380, 459
DpnII	GATC	5 cut(s)	32, 145, 361, 378, 457
DraIII	CACNNNGTG	1 cut(s)	549
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	2 cut(s)	198, 274
EagI	CGGCCG	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	3 cut(s)	86, 294, 405
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	310, 635
FaiI	YATR	6 cut(s)	197, 308, 422, 494, 609, 633
FatI	CATG	2 cut(s)	306, 631
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	3 cut(s)	58, 213, 277
Fsp4HI	GCNGC	3 cut(s)	58, 213, 277
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	3 cut(s)	18, 170, 280
GluI	GCNGC	3 cut(s)	58, 213, 277
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	5 cut(s)	180, 200, 276, 293, 636
HapII	CCGG	3 cut(s)	111, 217, 511
HhaI	GCGC	3 cut(s)	19, 171, 281
Hin1II	CATG	2 cut(s)	310, 635
Hin6I	GCGC	3 cut(s)	17, 169, 279
HinP1I	GCGC	3 cut(s)	17, 169, 279
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	3 cut(s)	111, 217, 511
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	255, 518, 539
Hpy188III	TCNNGA	4 cut(s)	98, 143, 239, 262
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	67, 70, 206
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	4 cut(s)	12, 187, 547, 574
HpyCH4IV	ACGT	3 cut(s)	62, 129, 162
HpyCH4V	TGCA	2 cut(s)	496, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 177, 402
HpySE526I	ACGT	3 cut(s)	62, 129, 162
Hsp92II	CATG	2 cut(s)	310, 635
HspAI	GCGC	3 cut(s)	17, 169, 279
Kzo9I	GATC	5 cut(s)	32, 145, 361, 378, 457
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	3 cut(s)	62, 129, 162
MalI	GATC	5 cut(s)	34, 147, 363, 380, 459
MboI	GATC	5 cut(s)	32, 145, 361, 378, 457
MboII	GAAGA	2 cut(s)	148, 254
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	2 cut(s)	93, 603
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	8 cut(s)	23, 191, 200, 249, 258, 446, 647, 658
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	3 cut(s)	111, 217, 511
MspR9I	CCNGG	5 cut(s)	88, 111, 217, 296, 407
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	3 cut(s)	88, 296, 407
MvnI	CGCG	3 cut(s)	17, 74, 279
MwoI	GCNNNNNNNGC	3 cut(s)	23, 177, 402
NciI	CCSGG	2 cut(s)	111, 217
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	5 cut(s)	32, 145, 361, 378, 457
NlaIII	CATG	2 cut(s)	310, 635
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 309
PctI	GAATGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	59, 214, 278
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
PpuMI	RGGWCCY	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	86, 294, 405
PspGI	CCWGG	3 cut(s)	86, 294, 405
PspPI	GGNCC	2 cut(s)	267, 292
PspPPI	RGGWCCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	3 cut(s)	58, 213, 277
Sau3AI	GATC	5 cut(s)	32, 145, 361, 378, 457
Sau96I	GGNCC	2 cut(s)	267, 292
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	5 cut(s)	88, 111, 217, 296, 407
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	9 cut(s)	65, 132, 165, 260, 272, 411, 509, 529, 570
SgrDI	CGTCGACG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	93, 603
SsiI	CCGC	5 cut(s)	47, 57, 210, 213, 277
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	5 cut(s)	86, 109, 215, 294, 405
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	4 cut(s)	12, 187, 547, 574
TaiI	ACGT	3 cut(s)	65, 132, 165
TaqI	TCGA	3 cut(s)	65, 99, 385
TasI	AATT	2 cut(s)	93, 603
TauI	GCSGC	3 cut(s)	60, 215, 279
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	239, 275, 323
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.