Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011311

Physical Location & Seq

Genomic Coordinates Reverse (-)

15525979 .. 15527926

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGATTCTGTACGCCCTCGTGGCTCGTGGCACGGTGGTTCTTTCTGAGTTCACCGCCACCTCTACGAATGCGAGCACCATCGCCAAACAGATCCTCGAGAAGGTCCCTGGAGACAACGACAGCAACGTCTCCTACTCTCAGGATCGTTACGTCTTCCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAGGAGAATTCCTTTTGCCTTTTTGGAGGATATTCACCAGAGATTCGTACGGACTTATGGCAGGGCTGTTCATACAGCACTAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCAGCAGATTGACTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGTATTAAGGGTGAAATGAATCAGGTGCGGGGTGTCATGATAGAAAACATTGACAAAGTCCTAGATAGAGGTGAACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGGAATACATTCCGGTTCAGAAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAACTGCAAGCTCACGGTCCTCTTAATACTACTACTACTGGTGATCATATACATTGCAGTGGCCTTTCTCTGCCACGGACCTACTCTACCATCTTGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030897 GO:0031090 GO:0031201 GO:0032940 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097305 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

219

Amino Acids

25.04

Weight (kDa)

9.25

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	3.3e-24	Regulated-SNARE-like domain
Synaptobrevin	PF00957	126 - 205	3.9e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25340 AT4G32150 AT5G11150 AT5G11150
fragaria_vesca	FvH4_2g28860 FvH4_2g28860
malus_domestica	MD08G1156200.v1.1 MD15G1126900.v1.1
prunus_persica	Prupe.1G482600_v2.0.a1
pyrus_communis	pycom08g12810 pycom15g11450
rosa_chinensis	RchiOBHm_Chr6g0297631
rosa_laevigata	RLG00000011575
rosa_multiflora	Rmu_sc0008915.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170300
rosa_rugosa	Rorug06G0274800
rosa_samantha	Rh6BG393400 Rh6CG399200 Rh6DG385800
rosa_wichuraiana	Rw6G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AciI	CCGC	4 cut(s)	57, 210, 412, 486
AclI	AACGTT	1 cut(s)	460
AclWI	GGATC	3 cut(s)	88, 153, 356
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	222, 317
AfaI	GTAC	2 cut(s)	14, 264
AfiI	CCNNNNNNNGG	2 cut(s)	103, 216
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	299, 469, 527, 568
AluI	AGCT	4 cut(s)	299, 469, 527, 568
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	108, 136
AlwI	GGATC	3 cut(s)	88, 153, 356
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	178, 198, 618
ApoI	RAATTY	2 cut(s)	222, 317
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	506
AspS9I	GGNCC	3 cut(s)	106, 574, 635
AsuHPI	GGTGA	6 cut(s)	46, 175, 242, 407, 467, 610
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	3 cut(s)	106, 574, 635
BauI	CACGAG	2 cut(s)	20, 27
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	3 cut(s)	89, 170, 655
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	108, 136
BfaI	CTAG	3 cut(s)	296, 324, 446
BglI	GCCNNNNNGGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	3 cut(s)	106, 574, 635
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	106, 574, 635
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	109, 631
BsaWI	WCCGGW	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 216
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	312, 609
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	109, 631
BseLI	CCNNNNNNNGG	2 cut(s)	103, 216
BseMI	GCAATG	2 cut(s)	312, 609
BseMII	CTCAG	3 cut(s)	39, 155, 346
BseNI	ACTGG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	180, 200, 620
BsiHKAI	GWGCWC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	213, 511
BsiWI	CGTACG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	103, 216
BsmAI	GTCTC	2 cut(s)	108, 136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	180, 200, 620
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	93, 145, 361, 600
BspACI	CCGC	4 cut(s)	57, 210, 412, 486
BspANI	GGCC	3 cut(s)	180, 200, 620
BspCNI	CTCAG	3 cut(s)	40, 154, 345
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	3 cut(s)	88, 153, 356
BsrDI	GCAATG	2 cut(s)	312, 609
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	109, 631
BssMI	GATC	4 cut(s)	93, 145, 361, 600
BssSI	CACGAG	2 cut(s)	20, 27
Bst2BI	CACGAG	2 cut(s)	20, 27
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	37, 187, 574
BstC8I	GCNNGC	3 cut(s)	76, 525, 566
BstDEI	CTNAG	3 cut(s)	48, 141, 332
BstDSI	CCRYGG	1 cut(s)	631
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstKTI	GATC	4 cut(s)	96, 148, 364, 603
BstMAI	GTCTC	2 cut(s)	108, 136
BstMBI	GATC	4 cut(s)	93, 145, 361, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 177
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	180, 200, 620
BtgI	CCRYGG	1 cut(s)	631
BtgZI	GCGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	3 cut(s)	76, 525, 566
CciI	TCATGA	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	106, 574, 635
Csp6I	GTAC	2 cut(s)	13, 263
CviAII	CATG	1 cut(s)	421
CviJI	RGCY	9 cut(s)	26, 180, 200, 281, 299, 469, 527, 568, 620
CviKI_1	RGCY	9 cut(s)	26, 180, 200, 281, 299, 469, 527, 568, 620
CviQI	GTAC	2 cut(s)	13, 263
DdeI	CTNAG	3 cut(s)	48, 141, 332
DpnI	GATC	4 cut(s)	95, 147, 363, 602
DpnII	GATC	4 cut(s)	93, 145, 361, 600
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	106, 574, 635
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	2 cut(s)	222, 317
EcoRII	CCWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	424
FaiI	YATR	8 cut(s)	197, 273, 288, 303, 422, 494, 605, 607
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	420
FauI	CCCGC	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	600
FspBI	CTAG	3 cut(s)	296, 324, 446
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	180, 200, 620
HapII	CCGG	2 cut(s)	213, 511
Hin1II	CATG	1 cut(s)	424
HinfI	GANTC	3 cut(s)	7, 258, 403
HpaII	CCGG	2 cut(s)	213, 511
HphI	GGTGA	6 cut(s)	46, 175, 242, 407, 467, 610
Hpy166II	GTNNAC	2 cut(s)	54, 458
Hpy188I	TCNGA	2 cut(s)	49, 518
Hpy188III	TCNNGA	4 cut(s)	100, 143, 324, 421
Hpy8I	GTNNAC	2 cut(s)	54, 458
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	2 cut(s)	97, 210
HpyCH4III	ACNGT	3 cut(s)	37, 187, 574
HpyCH4IV	ACGT	5 cut(s)	129, 153, 162, 460, 546
HpyCH4V	TGCA	5 cut(s)	305, 496, 564, 614, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 177
HpyF3I	CTNAG	3 cut(s)	48, 141, 332
HpySE526I	ACGT	5 cut(s)	129, 153, 162, 460, 546
Hsp92II	CATG	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	93, 145, 361, 600
LmnI	GCTCC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	296, 324, 446
MaeII	ACGT	5 cut(s)	129, 153, 162, 460, 546
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	4 cut(s)	95, 147, 363, 602
MboI	GATC	4 cut(s)	93, 145, 361, 600
MboII	GAAGA	2 cut(s)	148, 215
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	2 cut(s)	222, 317
MnlI	CCTC	8 cut(s)	29, 73, 107, 191, 235, 307, 446, 587
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	5 cut(s)	165, 381, 390, 581, 658
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	2 cut(s)	213, 511
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	23, 177
NdeII	GATC	4 cut(s)	93, 145, 361, 600
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 159
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	7, 258, 403
Pfl23II	CGTACG	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspLI	CGTACG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	106, 574, 635
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	2 cut(s)	14, 264
RsaNI	GTAC	2 cut(s)	13, 263
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	5 cut(s)	165, 381, 390, 581, 658
Sau3AI	GATC	4 cut(s)	93, 145, 361, 600
Sau96I	GGNCC	3 cut(s)	106, 574, 635
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	80
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	3 cut(s)	106, 574, 635
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	222, 317
SsiI	CCGC	4 cut(s)	57, 210, 412, 486
SspMI	CTAG	3 cut(s)	296, 324, 446
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	3 cut(s)	37, 187, 574
TaiI	ACGT	5 cut(s)	132, 156, 165, 463, 549
TaqI	TCGA	2 cut(s)	99, 477
TasI	AATT	2 cut(s)	222, 317
TfiI	GAWTC	3 cut(s)	7, 258, 403
Tru1I	TTAA	5 cut(s)	165, 381, 390, 581, 658
Tru9I	TTAA	5 cut(s)	165, 381, 390, 581, 658
TscAI	CASTG	1 cut(s)	621
TspDTI	ATGAA	3 cut(s)	275, 323, 416
TspGWI	ACGGA	2 cut(s)	280, 648
TspRI	CASTG	1 cut(s)	621
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	3 cut(s)	106, 574, 635
VspI	ATTAAT	1 cut(s)	381
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	222, 317
XbaI	TCTAGA	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	3 cut(s)	296, 324, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.