Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011311

Physical Location & Seq

Genomic Coordinates Reverse (-)

3546200 .. 3548117

Gene Structure 1918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGATCATATTTGCGTTGGTGGCTCGTGGAACGGTGGTGTTATCGGAGTTTAGCGCTACTTCGACTAACGCTAGCTCAATCTCGAAGCAGATTTTGGAGAAGTTGCCTGGAAACGATAGCGATAGCCATATGTCTTACTCTCAGGATCGCTACATCTTCCATGTGAAACGAACAGATGGTCTTACCGTTCTCTGTATGGCCGACGAAACCGCCGGAAGGAATATTCCGTTTGCGTTTTTGGATGATATTCATCAGAGGTTTGTGAAAACATATGGCCGAGCTATTCATTCAGCTCAAGCTTATTCCATGAATGATGAATTTTCAAGAGTTCTGAGTCAACAGATGGAGTTTTATTCCAATGATCCTAATGCAGACAGGATGAGCAGAATCAAAGGTGAAATGAGTCAGGTTCGAAATGTGATGATTGAGAATATTGATAAAGTTTTGGATAGAGGGGAGCGTTTGGAGTTGCTAGTTGATAAAACCGAAAATATGCAAGGCAACACTTTTCGTTTCAGAAAGCAAGCTCGTCGTTACAGAACCATTATGTGGTGGAGAAATGTCAAGCTTACAATTGCTCTGATACTTGTACTAGCTTTGGTTGTGTACATCGCGATGGCCTTTGTTTGCCATGGGCCAAGTCTTCCTTCTTGTTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030897 GO:0031090 GO:0031201 GO:0032940 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097305 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

221

Amino Acids

25.32

Weight (kDa)

9.17

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 109	4.9e-25	Regulated-SNARE-like domain
Synaptobrevin	PF00957	127 - 206	5.6e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25340 AT4G32150 AT5G11150 AT5G11150
fragaria_vesca	FvH4_2g28860 FvH4_2g28860
malus_domestica	MD08G1156200.v1.1 MD15G1126900.v1.1
prunus_persica	Prupe.1G482600_v2.0.a1
pyrus_communis	pycom08g12810 pycom15g11450
rosa_chinensis	RchiOBHm_Chr6g0297631
rosa_laevigata	RLG00000011575
rosa_multiflora	Rmu_sc0008915.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170300
rosa_rugosa	Rorug06G0274800
rosa_samantha	Rh6BG393400 Rh6CG399200 Rh6DG385800
rosa_wichuraiana	Rw6G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccII	CGCG	1 cut(s)	617
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	156, 359
AcoI	YGGCCR	2 cut(s)	201, 277
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	2 cut(s)	594, 611
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	219, 552
AgsI	TTSAA	2 cut(s)	327, 661
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	4 cut(s)	80, 112, 634, 666
AluBI	AGCT	7 cut(s)	78, 284, 296, 302, 530, 571, 599
AluI	AGCT	7 cut(s)	78, 284, 296, 302, 530, 571, 599
AlwI	GGATC	2 cut(s)	156, 359
Aor51HI	AGCGCT	1 cut(s)	58
AoxI	GGCC	4 cut(s)	201, 277, 621, 638
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	638
BccI	CCATC	3 cut(s)	173, 340, 613
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	111
BfaI	CTAG	3 cut(s)	75, 476, 596
BfoI	RGCGCY	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	638
BmrFI	CCNGG	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	638
Bpu14I	TTCGAA	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 552
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	2 cut(s)	250, 387
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	219, 552
BseMII	CTCAG	2 cut(s)	158, 326
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	4 cut(s)	203, 279, 623, 640
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	219, 552
BsnI	GGCC	4 cut(s)	203, 279, 623, 640
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	6, 148, 364
Bsp19I	CCATGG	1 cut(s)	634
Bsp68I	TCGCGA	1 cut(s)	617
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	4 cut(s)	203, 279, 623, 640
BspCNI	CTCAG	2 cut(s)	157, 327
BspFNI	CGCG	1 cut(s)	617
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	156, 359
BspT104I	TTCGAA	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	3 cut(s)	6, 148, 364
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	37, 190
BstAUI	TGTACA	1 cut(s)	609
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	76, 528
BstDEI	CTNAG	2 cut(s)	144, 335
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	2 cut(s)	250, 387
BstFNI	CGCG	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	9, 151, 367
BstMBI	GATC	3 cut(s)	6, 148, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	638
BsuRI	GGCC	4 cut(s)	203, 279, 623, 640
BtgI	CCRYGG	1 cut(s)	634
BtgZI	GCGATG	2 cut(s)	598, 632
BtsCI	GGATG	2 cut(s)	250, 387
BtuMI	TCGCGA	1 cut(s)	617
Cac8I	GCNNGC	2 cut(s)	76, 528
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	638
Csp6I	GTAC	2 cut(s)	593, 610
CviAII	CATG	3 cut(s)	164, 310, 635
CviQI	GTAC	2 cut(s)	593, 610
DdeI	CTNAG	2 cut(s)	144, 335
DpnI	GATC	3 cut(s)	8, 150, 366
DpnII	GATC	3 cut(s)	6, 148, 364
EaeI	YGGCCR	2 cut(s)	201, 277
Eco130I	CCWWGG	1 cut(s)	634
Eco47III	AGCGCT	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	3 cut(s)	167, 313, 638
FalI	AAGNNNNNCTT	2 cut(s)	634, 666
FatI	CATG	3 cut(s)	163, 309, 634
FauNDI	CATATG	2 cut(s)	132, 274
FokI	GGATG	2 cut(s)	257, 394
FspBI	CTAG	3 cut(s)	75, 476, 596
GlaI	GCGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	203, 279, 623, 640
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	167, 313, 638
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HindIII	AAGCTT	2 cut(s)	300, 569
HinfI	GANTC	3 cut(s)	337, 390, 406
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	341, 610
Hpy188I	TCNGA	5 cut(s)	49, 258, 336, 521, 585
Hpy188III	TCNNGA	4 cut(s)	85, 146, 327, 616
Hpy8I	GTNNAC	2 cut(s)	341, 610
Hpy99I	CGWCG	2 cut(s)	209, 537
HpyAV	CCTTC	2 cut(s)	213, 660
HpyCH4III	ACNGT	2 cut(s)	37, 190
HpyCH4V	TGCA	2 cut(s)	374, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	144, 335
Hsp92II	CATG	3 cut(s)	167, 313, 638
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	6, 148, 364
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	6 cut(s)	96, 123, 131, 229, 364, 395
MaeI	CTAG	3 cut(s)	75, 476, 596
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	8, 150, 366
MboI	GATC	3 cut(s)	6, 148, 364
MboII	GAAGA	2 cut(s)	151, 638
MfeI	CAATTG	1 cut(s)	576
MluCI	AATT	2 cut(s)	320, 576
MlyI	GAGTC	2 cut(s)	346, 415
MnlI	CCTC	2 cut(s)	252, 449
MslI	CAYNNNNRTG	1 cut(s)	617
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	634
NdeI	CATATG	2 cut(s)	132, 274
NdeII	GATC	3 cut(s)	6, 148, 364
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	167, 313, 638
NmeAIII	GCCGAG	1 cut(s)	305
NruI	TCGCGA	1 cut(s)	617
NspV	TTCGAA	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	552
PleI	GAGTC	2 cut(s)	345, 414
PpsI	GAGTC	2 cut(s)	345, 414
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	638
RruI	TCGCGA	1 cut(s)	617
RsaI	GTAC	2 cut(s)	594, 611
RsaNI	GTAC	2 cut(s)	593, 610
RseI	CAYNNNNRTG	1 cut(s)	617
Sau3AI	GATC	3 cut(s)	6, 148, 364
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	2 cut(s)	346, 415
ScrFI	CCNGG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	320, 576
SsiI	CCGC	1 cut(s)	213
SspI	AATATT	2 cut(s)	226, 436
SspMI	CTAG	3 cut(s)	75, 476, 596
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	37, 190
TaqI	TCGA	3 cut(s)	65, 86, 415
TasI	AATT	2 cut(s)	320, 576
TatI	WGTACW	2 cut(s)	592, 609
TfiI	GAWTC	1 cut(s)	390
TspDTI	ATGAA	4 cut(s)	242, 278, 326, 333
TspGWI	ACGGA	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	552
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	3 cut(s)	75, 476, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.