Rorug06G0274800

Protein FAR1-RELATED SEQUENCE 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000252
Physical Location & Seq
Reverse (-)
42196011 .. 42199523
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0274800.1

Sequence Viewer

Length: 603 bp
ATGTATGCTGATCGAGAAGAAGCTGATGCCAAGAGGTCCATTAAAGAGCGTCTCAATGGCAACAACTTCAGGGATCGTAGACAAGTAGCCGGCAAAAGGCAGAGACAAGATGACAAGTGGGAGCATGATCTTTATGATGATAACGAACCTCAATTATCAAATCGCAAAGTTGGGGACCTTCGTTTGAAGCTCCAGAGGAAAAGTTTCAAACAAACATCTGGAACAAGATCTGTTTCAGGTGTAAGGGACCTACGGGAAAAGCTTTCCGGTACTATGAAGCCACAACCAGTGAATGCCGATCCACCAAGGTCAAAAGTAGAGGCTGCTAAATCAGCAAGGAGAACCATTGCTGTTGCTGCACCTGCACCAGAGACTCACAAAGTTGCCAACACAACATCTAGGAAGAAGGCTTCAAAAAAGGTTGGCACATCAGTGGACGAATTTTTGACGTCCTTGGATCTTGAAAAGTATTCCATTACATTTCAGGCAGAGGAAGTTGATATGACGGCTCTTGTGCACATGACTGATGAGGATCTCAAGGCTCTAGGAATACCAATGGGTCCAAGGAAGAAGATTCTTTTGGCATTGGAATCAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

200

Amino Acids

22.6

Weight (kDa)

9.84

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 144 - 197 4.1e-15 SAM domain (Sterile alpha motif)
SAM_2 PF07647 144 - 197 2.4e-09 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
AatII GACGTC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 79
AclWI GGATC 4 cut(s) 81, 293, 465, 540
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 4 cut(s) 187, 208, 414, 464
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 3 cut(s) 23, 190, 262
AluI AGCT 3 cut(s) 23, 190, 262
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 3 cut(s) 56, 97, 365
Alw44I GTGCAC 1 cut(s) 515
AlwI GGATC 4 cut(s) 81, 293, 465, 540
ApaLI GTGCAC 1 cut(s) 515
ApeKI GCWGC 2 cut(s) 323, 356
ApoI RAATTY 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 4 cut(s) 36, 175, 247, 560
AvaII GGWCC 4 cut(s) 36, 175, 247, 560
BaeGI GKGCMC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 310, 343
BceAI ACGGC 1 cut(s) 522
BcoDI GTCTC 3 cut(s) 56, 97, 365
BfaI CTAG 2 cut(s) 399, 545
BfuAI ACCTGC 1 cut(s) 370
BglII AGATCT 1 cut(s) 227
BisI GCNGC 2 cut(s) 324, 357
BlsI GCNGC 2 cut(s) 325, 358
Bme18I GGWCC 4 cut(s) 36, 175, 247, 560
BmgT120I GGNCC 4 cut(s) 36, 175, 247, 560
BmiI GGNNCC 3 cut(s) 176, 248, 561
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 305, 453, 563
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 305, 453, 563
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 2 cut(s) 310, 343
BsgI GTGCAG 2 cut(s) 342, 348
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 2 cut(s) 90, 267
BslFI GGGAC 2 cut(s) 188, 260
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 3 cut(s) 56, 97, 365
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 188, 260
BsmI GAATGC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
BspLI GGNNCC 3 cut(s) 176, 248, 561
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 4 cut(s) 81, 293, 465, 540
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 305, 453, 563
BssMI GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 3 cut(s) 305, 453, 563
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 91
BstKTI GATC 7 cut(s) 13, 76, 130, 230, 301, 460, 535
BstMAI GTCTC 3 cut(s) 56, 97, 365
BstMBI GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
BstMWI GCNNNNNNNGC 3 cut(s) 332, 356, 362
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 310, 343
BstX2I RGATCY 3 cut(s) 227, 457, 532
BstYI RGATCY 3 cut(s) 227, 457, 532
BtsIMutI CAGTG 2 cut(s) 294, 438
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 4 cut(s) 36, 175, 247, 560
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 125, 520
CviJI RGCY 9 cut(s) 23, 89, 190, 262, 280, 323, 410, 509, 542
CviKI_1 RGCY 9 cut(s) 23, 89, 190, 262, 280, 323, 410, 509, 542
CviQI GTAC 1 cut(s) 270
DpnI GATC 7 cut(s) 12, 75, 129, 229, 300, 459, 534
DpnII GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
Eco130I CCWWGG 3 cut(s) 305, 453, 563
Eco47I GGWCC 4 cut(s) 36, 175, 247, 560
Eco57I CTGAAG 1 cut(s) 52
EcoO109I RGGNCCY 2 cut(s) 175, 247
EcoT14I CCWWGG 3 cut(s) 305, 453, 563
ErhI CCWWGG 3 cut(s) 305, 453, 563
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 128, 523
FaiI YATR 6 cut(s) 6, 126, 135, 275, 503, 521
FaqI GGGAC 2 cut(s) 188, 260
FatI CATG 2 cut(s) 124, 519
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 324, 357
Fsp4HI GCNGC 2 cut(s) 324, 357
FspBI CTAG 2 cut(s) 399, 545
GluI GCNGC 2 cut(s) 324, 357
GsuI CTGGAG 1 cut(s) 176
HapII CCGG 2 cut(s) 90, 267
HgaI GACGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 2 cut(s) 128, 523
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 373, 574, 590
HpaII CCGG 2 cut(s) 90, 267
Hpy166II GTNNAC 3 cut(s) 80, 436, 517
Hpy188III TCNNGA 5 cut(s) 14, 193, 219, 461, 594
Hpy8I GTNNAC 3 cut(s) 80, 436, 517
HpyAV CCTTC 2 cut(s) 188, 400
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 3 cut(s) 359, 365, 517
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 356, 362
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 2 cut(s) 128, 523
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
LmnI GCTCC 2 cut(s) 121, 195
Lsp1109I GCAGC 2 cut(s) 310, 343
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 399, 545
MaeII ACGT 1 cut(s) 449
MalI GATC 7 cut(s) 12, 75, 129, 229, 300, 459, 534
MboI GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
MboII GAAGA 4 cut(s) 29, 415, 580, 583
MflI RGATCY 3 cut(s) 227, 457, 532
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 2 cut(s) 152, 440
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 6 cut(s) 27, 159, 189, 313, 484, 523
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 431
MspI CCGG 2 cut(s) 90, 267
Mva1269I GAATGC 1 cut(s) 298
MwoI GCNNNNNNNGC 3 cut(s) 332, 356, 362
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 2 cut(s) 128, 523
NlaIV GGNNCC 3 cut(s) 176, 248, 561
OliI CACNNNNGTG 1 cut(s) 431
PaqCI CACCTGC 1 cut(s) 370
PctI GAATGC 1 cut(s) 298
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 574, 590
PkrI GCNGC 2 cut(s) 325, 358
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PpuMI RGGWCCY 2 cut(s) 175, 247
Psp5II RGGWCCY 2 cut(s) 175, 247
PspN4I GGNNCC 3 cut(s) 176, 248, 561
PspPI GGNCC 4 cut(s) 36, 175, 247, 560
PspPPI RGGWCCY 2 cut(s) 175, 247
PsuI RGATCY 3 cut(s) 227, 457, 532
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 2 cut(s) 324, 357
Sau3AI GATC 7 cut(s) 10, 73, 127, 227, 298, 457, 532
Sau96I GGNCC 4 cut(s) 36, 175, 247, 560
SchI GAGTC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 4 cut(s) 36, 175, 247, 560
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 152, 440
SspMI CTAG 2 cut(s) 399, 545
StyI CCWWGG 3 cut(s) 305, 453, 563
TaiI ACGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 13
TasI AATT 2 cut(s) 152, 440
TfiI GAWTC 2 cut(s) 574, 590
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 294, 438
TseI GCWGC 2 cut(s) 323, 356
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 294, 438
VneI GTGCAC 1 cut(s) 515
VpaK11BI GGWCC 4 cut(s) 36, 175, 247, 560
XapI RAATTY 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 399, 545
ZraI GACGTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.