Rroxscaffold_3G00227000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000252
Physical Location & Seq
Reverse (-)
10860570 .. 10864140
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227000.1

Sequence Viewer

Length: 366 bp
ATGGAACAATCGTCCAATGAATCGAGAACATTATTCTCACTAATGATCAAGGGGTCAAGATCAAGAGGTCATCTGCCATTGAAGAGGAATGAATCTAAGAAAGAGCAAAAGCAAGAGGTCAAAAACAAACAAAATAGAAGAAATAAGGTTCCATCCAATAAAAAGCCAAATCATGAAGGAGAAGGATTAAAGACACCGGTCATATCTTTGTCTTCAAAAGACATCTTGCAAGAGCTCTGCCAACATCTTTTCAACTCTTGCTTACCATTAGCAAGAAACCAAAATCAGATTGCCCAGCTTTACATTCCTAACTCTCATTGTCAATCAGCTTTTGGTCAATCTGGCAAACTGGTGGAAAATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

9.91

Isoelectric Point (pI)

68.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgeI ACCGGT 1 cut(s) 196
AgsI TTSAA 3 cut(s) 82, 216, 253
AluBI AGCT 3 cut(s) 235, 298, 329
AluI AGCT 3 cut(s) 235, 298, 329
Alw21I GWGCWC 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 196
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 160
BclI TGATCA 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 150
BoxI GACNNNNGTC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 45, 59
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 2 cut(s) 45, 59
Bst6I CTCTTC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 2 cut(s) 48, 62
BstMBI GATC 2 cut(s) 45, 59
BstPAI GACNNNNGTC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 152
CciI TCATGA 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 196
CspAI ACCGGT 1 cut(s) 196
CviAII CATG 1 cut(s) 173
CviJI RGCY 4 cut(s) 166, 235, 298, 329
CviKI_1 RGCY 4 cut(s) 166, 235, 298, 329
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 47, 61
DpnII GATC 2 cut(s) 45, 59
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 174, 203
FatI CATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 45
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 298
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 176
HinfI GANTC 2 cut(s) 20, 92
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 4 cut(s) 24, 57, 63, 173
HpyAV CCTTC 2 cut(s) 170, 176
HpyCH4V TGCA 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 45, 59
LpnPI CCDG 4 cut(s) 210, 308, 327, 335
MalI GATC 2 cut(s) 47, 61
MboI GATC 2 cut(s) 45, 59
MboII GAAGA 3 cut(s) 94, 150, 204
MhlI GDGCHC 1 cut(s) 237
MnlI CCTC 3 cut(s) 59, 78, 109
MseI TTAA 1 cut(s) 188
MspI CCGG 1 cut(s) 197
NdeII GATC 2 cut(s) 45, 59
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 150
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 2 cut(s) 20, 92
PinAI ACCGGT 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 150
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 188
Sau3AI GATC 2 cut(s) 45, 59
SduI GDGCHC 1 cut(s) 237
SetI ASST 6 cut(s) 70, 120, 150, 237, 300, 331
SstI GAGCTC 1 cut(s) 237
TaqI TCGA 1 cut(s) 23
TfiI GAWTC 2 cut(s) 20, 92
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 33, 105, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.