Rmu_sc0004564.1_g000003

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004564.1
Physical Location & Seq
Forward (+)
8752 .. 11462
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004564.1_g000003.1.cds

Sequence Viewer

Length: 1512 bp
atgaccggcgatgccactttttctccgaccaaccgggccttgtcattcaccatagaagaaggttctcaaaacagcgagcaacttctggaggacgaaaacaatgatcttgggaatgattgcgagcaattgtttgagattgatgggaatgagcctgaaagtgaaagagatgatacaagtgatcagttttttgagattgatagcaatgacaatgaaaatgacagaggtgatctaaatgaacagctatttgatattcaaggcaatgaccatgagatgagcaggaatgatgatactgtaattgatggtcaaaatggtggatctcaagaaaaggtctatccccaaccagttgtgggtttggagtttgattcatatgatgatgcttacaattattataattgctacgctaaggaacttggatttgccatcagggtgaaatcttcatggacaaagcgtaacagcaaagagaagcggggtgcagttctatgttgcaactgtgagggttttaaaacaatcaaagaagcaaacagtcgcaagaaagaaacgagaactggttgtctagcaatgataaggttgagactagtggaatctaacagatggagggtggatgaagtcaagcttgaacacaaccatttattcgatcctgaaagagctcagaactccaagtcccacaagaagatggattctggggctaaaagaaagatggagccaacccttgatgttgaagtacgcacgatcaagttatatcgcacacctggtgcagacatagttggttatggaagctcgaactcctatgaaggagaaagtaacagctatgttgatgtgtccaagagattgaaactcaaacaaggagatgcaagtgcaatttataaatatttcagtcgggtacagctaactgatcctaattttttctatgtgaatgatctcagtgatgaagggcatttgaggaatgtgttttggattgattctaggtctagagctgcatacagttactttggtgatgtagtagcatttgacactacatgcttgtcaaacaattatgagattccgcttgttgcatttgttggagtaaatcaccatgggcagacaattttgcttggttgtggtttgcttgctgatgagacagtggaaacatatatatggttatttagggcatggcttacctgtatgtctggtcgccctccacagactatcatcacaaaccagtgcaaggccatgcacagtgctatagtagaggtatttcctagggctcatcatcgtctttgtacttcacatgtagtgcaaagtattcttgagaatatggaagcactgcaagactacgaggcgtttcagatgattttgagtagaactgtatacgactcattaaaagcggatgagtttgaatccgggtgggaagatatgatccagagatttggaattaggaatcatgaatttcttcaaactttgtatgaagatcgtgaacgttgggcattcttgagaatatggaagcactgcaagactacgaggcgtttcagatga

Protein Analysis

503

Amino Acids

58.09

Weight (kDa)

5.12

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 390, 864
AccI GTMKAC 1 cut(s) 1347
AciI CCGC 3 cut(s) 466, 1043, 1364
AclI AACGTT 1 cut(s) 1456
AclWI GGATC 4 cut(s) 322, 629, 887, 1390
AcsI RAATTY 1 cut(s) 1424
AdeI CACNNNGTG 1 cut(s) 752
AfaI GTAC 3 cut(s) 723, 882, 1261
AfiI CCNNNNNNNGG 2 cut(s) 347, 1204
AflIII ACRYGT 1 cut(s) 1267
AgsI TTSAA 6 cut(s) 254, 617, 719, 832, 1376, 1433
AhlI ACTAGT 1 cut(s) 574
AjnI CCWGG 1 cut(s) 748
AloI GAACNNNNNNTCC 2 cut(s) 644, 676
AluBI AGCT 7 cut(s) 241, 613, 647, 777, 807, 886, 974
AluI AGCT 7 cut(s) 241, 613, 647, 777, 807, 886, 974
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 565, 1109
AlwI GGATC 4 cut(s) 322, 629, 887, 1390
AoxI GGCC 2 cut(s) 36, 1206
ApeKI GCWGC 1 cut(s) 974
ApoI RAATTY 1 cut(s) 1424
Asp700I GAANNNNTTC 1 cut(s) 1428
AspA2I CCTAGG 1 cut(s) 1238
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 2 cut(s) 35, 1381
AsuHPI GGTGA 5 cut(s) 40, 236, 439, 1004, 1061
AvrII CCTAGG 1 cut(s) 1238
BanII GRGCYC 2 cut(s) 649, 1246
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 1 cut(s) 961
BccI CCATC 6 cut(s) 134, 293, 428, 585, 667, 691
BciT130I CCWGG 1 cut(s) 750
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 2 cut(s) 35, 1381
BcoDI GTCTC 2 cut(s) 565, 1109
BcuI ACTAGT 1 cut(s) 574
BfaI CTAG 5 cut(s) 554, 575, 963, 969, 1239
BfmI CTRYAG 1 cut(s) 1221
BisI GCNGC 1 cut(s) 975
BlnI CCTAGG 1 cut(s) 1238
BlsI GCNGC 1 cut(s) 976
Bme1390I CCNGG 3 cut(s) 35, 750, 1381
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 3 cut(s) 35, 750, 1381
BmsI GCATC 2 cut(s) 364, 838
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 3 cut(s) 303, 1307, 1489
BpuMI CCSGG 2 cut(s) 35, 1381
BsaJI CCNNGG 2 cut(s) 1072, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 1204
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 341, 550, 1198
Bse3DI GCAATG 3 cut(s) 208, 265, 564
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 1072, 1238
BseGI GGATG 2 cut(s) 607, 1372
BseLI CCNNNNNNNGG 2 cut(s) 347, 1204
BseMI GCAATG 3 cut(s) 208, 265, 564
BseMII CTCAG 2 cut(s) 662, 934
BseNI ACTGG 3 cut(s) 341, 550, 1198
BseXI GCAGC 1 cut(s) 961
BsgI GTGCAG 2 cut(s) 492, 774
BshFI GGCC 2 cut(s) 38, 1208
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 3 cut(s) 6, 34, 1380
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 347, 1204
BsmAI GTCTC 2 cut(s) 565, 1109
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 1463
BsnI GGCC 2 cut(s) 38, 1208
Bsp1286I GDGCHC 2 cut(s) 649, 1246
Bsp19I CCATGG 1 cut(s) 1072
BspACI CCGC 3 cut(s) 466, 1043, 1364
BspANI GGCC 2 cut(s) 38, 1208
BspCNI CTCAG 2 cut(s) 661, 933
BspHI TCATGA 1 cut(s) 1420
BspLI GGNNCC 1 cut(s) 702
BspPI GGATC 4 cut(s) 322, 629, 887, 1390
BsrDI GCAATG 3 cut(s) 208, 265, 564
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 3 cut(s) 341, 550, 1198
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 1072, 1238
BssNAI GTATAC 1 cut(s) 1348
BssT1I CCWWGG 2 cut(s) 1072, 1238
Bst1107I GTATAC 1 cut(s) 1348
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 7 cut(s) 292, 491, 524, 983, 1120, 1217, 1345
BstC8I GCNNGC 3 cut(s) 77, 122, 1107
BstDEI CTNAG 3 cut(s) 402, 648, 920
BstDSI CCRYGG 1 cut(s) 1072
BstF5I GGATG 2 cut(s) 607, 1372
BstMAI GTCTC 2 cut(s) 565, 1109
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 2 cut(s) 1020, 1271
BstSCI CCNGG 3 cut(s) 33, 748, 1379
BstSFI CTRYAG 1 cut(s) 1221
BstV1I GCAGC 1 cut(s) 961
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 1406
BstYI RGATCY 1 cut(s) 314
BstZ17I GTATAC 1 cut(s) 1348
BsuRI GGCC 2 cut(s) 38, 1208
BtgI CCRYGG 1 cut(s) 1072
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 2 cut(s) 607, 1372
BtsI GCAGTG 2 cut(s) 1301, 1483
BtsIMutI CAGTG 6 cut(s) 928, 1125, 1205, 1222, 1301, 1483
Cac8I GCNNGC 3 cut(s) 77, 122, 1107
CciI TCATGA 1 cut(s) 1420
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 36
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 3 cut(s) 722, 881, 1260
CviAII CATG 8 cut(s) 266, 438, 1017, 1073, 1149, 1210, 1268, 1421
CviQI GTAC 3 cut(s) 722, 881, 1260
DdeI CTNAG 3 cut(s) 402, 648, 920
DraI TTTAAA 1 cut(s) 502
DraIII CACNNNGTG 1 cut(s) 752
Ecl136II GAGCTC 1 cut(s) 647
Eco130I CCWWGG 2 cut(s) 1072, 1238
Eco24I GRGCYC 2 cut(s) 649, 1246
Eco53kI GAGCTC 1 cut(s) 647
EcoICRI GAGCTC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 1072, 1238
EcoT38I GRGCYC 2 cut(s) 649, 1246
ErhI CCWWGG 2 cut(s) 1072, 1238
FaeI CATG 8 cut(s) 269, 441, 1020, 1076, 1152, 1213, 1271, 1424
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 646
FatI CATG 8 cut(s) 265, 437, 1016, 1072, 1148, 1209, 1267, 1420
FauI CCCGC 1 cut(s) 459
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 1347
Fnu4HI GCNGC 1 cut(s) 975
FokI GGATG 2 cut(s) 614, 1379
FriOI GRGCYC 2 cut(s) 649, 1246
Fsp4HI GCNGC 1 cut(s) 975
FspBI CTAG 5 cut(s) 554, 575, 963, 969, 1239
GluI GCNGC 1 cut(s) 975
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 2 cut(s) 38, 1208
HapII CCGG 3 cut(s) 6, 34, 1380
Hin1II CATG 8 cut(s) 269, 441, 1020, 1076, 1152, 1213, 1271, 1424
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 8 cut(s) 362, 581, 677, 959, 1039, 1352, 1376, 1417
HpaII CCGG 3 cut(s) 6, 34, 1380
HphI GGTGA 5 cut(s) 40, 236, 439, 1004, 1061
Hpy166II GTNNAC 2 cut(s) 1348, 1454
Hpy188I TCNGA 4 cut(s) 27, 651, 1326, 1508
Hpy188III TCNNGA 9 cut(s) 86, 320, 638, 969, 1286, 1399, 1421, 1451, 1468
Hpy8I GTNNAC 2 cut(s) 1348, 1454
HpyAV CCTTC 3 cut(s) 53, 785, 923
HpyCH4III ACNGT 7 cut(s) 292, 491, 524, 983, 1120, 1217, 1345
HpyCH4IV ACGT 1 cut(s) 1456
HpyF3I CTNAG 3 cut(s) 402, 648, 920
HpySE526I ACGT 1 cut(s) 1456
Hsp92II CATG 8 cut(s) 269, 441, 1020, 1076, 1152, 1213, 1271, 1424
Ksp22I TGATCA 1 cut(s) 178
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 1 cut(s) 961
LweI GCATC 2 cut(s) 364, 838
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 5 cut(s) 554, 575, 963, 969, 1239
MaeII ACGT 1 cut(s) 1456
MaeIII GTNAC 3 cut(s) 449, 800, 983
MboII GAAGA 6 cut(s) 68, 426, 682, 1400, 1421, 1457
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 2 cut(s) 649, 1246
MlyI GAGTC 1 cut(s) 1346
MmeI TCCRAC 2 cut(s) 50, 1039
MnlI CCTC 9 cut(s) 82, 215, 487, 588, 933, 1185, 1222, 1309, 1491
MroXI GAANNNNTTC 1 cut(s) 1428
MseI TTAA 2 cut(s) 501, 1358
MslI CAYNNNNRTG 2 cut(s) 425, 1132
MspI CCGG 3 cut(s) 6, 34, 1380
MspR9I CCNGG 3 cut(s) 35, 750, 1381
MunI CAATTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 1463
MvaI CCWGG 1 cut(s) 750
NciI CCSGG 2 cut(s) 35, 1381
NcoI CCATGG 1 cut(s) 1072
NdeI CATATG 1 cut(s) 367
NlaIII CATG 8 cut(s) 269, 441, 1020, 1076, 1152, 1213, 1271, 1424
NlaIV GGNNCC 1 cut(s) 702
NspI RCATGY 2 cut(s) 1020, 1271
PagI TCATGA 1 cut(s) 1420
PciI ACATGT 1 cut(s) 1267
PctI GAATGC 1 cut(s) 1463
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 7 cut(s) 362, 581, 677, 959, 1039, 1376, 1417
PkrI GCNGC 1 cut(s) 976
PleI GAGTC 1 cut(s) 1346
PpsI GAGTC 1 cut(s) 1346
PscI ACATGT 1 cut(s) 1267
PsiI TTATAA 2 cut(s) 390, 864
Psp124BI GAGCTC 1 cut(s) 649
Psp1406I AACGTT 1 cut(s) 1456
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 3 cut(s) 723, 882, 1261
RsaNI GTAC 3 cut(s) 722, 881, 1260
RseI CAYNNNNRTG 2 cut(s) 425, 1132
SacI GAGCTC 1 cut(s) 649
SaqAI TTAA 2 cut(s) 501, 1358
SatI GCNGC 1 cut(s) 975
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 1 cut(s) 1346
ScrFI CCNGG 3 cut(s) 35, 750, 1381
SduI GDGCHC 2 cut(s) 649, 1246
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 2 cut(s) 364, 838
SfcI CTRYAG 1 cut(s) 1221
SmiMI CAYNNNNRTG 2 cut(s) 425, 1132
SmlI CTYRAG 3 cut(s) 318, 1286, 1468
SmoI CTYRAG 3 cut(s) 318, 1286, 1468
SpeI ACTAGT 1 cut(s) 574
SsiI CCGC 3 cut(s) 466, 1043, 1364
SspI AATATT 1 cut(s) 869
SspMI CTAG 5 cut(s) 554, 575, 963, 969, 1239
SstI GAGCTC 1 cut(s) 649
StyD4I CCNGG 3 cut(s) 33, 748, 1379
StyI CCWWGG 2 cut(s) 1072, 1238
TaaI ACNGT 7 cut(s) 292, 491, 524, 983, 1120, 1217, 1345
TaiI ACGT 1 cut(s) 1459
TaqI TCGA 2 cut(s) 633, 779
TatI WGTACW 1 cut(s) 1259
TfiI GAWTC 7 cut(s) 362, 581, 677, 959, 1039, 1376, 1417
Tru1I TTAA 2 cut(s) 501, 1358
Tru9I TTAA 2 cut(s) 501, 1358
TscAI CASTG 6 cut(s) 928, 1125, 1205, 1222, 1308, 1490
TseI GCWGC 1 cut(s) 974
TspDTI ATGAA 9 cut(s) 225, 249, 354, 426, 618, 804, 942, 1437, 1458
TspRI CASTG 6 cut(s) 928, 1125, 1205, 1222, 1308, 1490
XapI RAATTY 1 cut(s) 1424
XbaI TCTAGA 1 cut(s) 968
XceI RCATGY 2 cut(s) 1020, 1271
XmaJI CCTAGG 1 cut(s) 1238
XmiI GTMKAC 1 cut(s) 1347
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 5 cut(s) 554, 575, 963, 969, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.