Rmu_sc0005198.1_g000003

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005198.1
OG0000252
Physical Location & Seq
Forward (+)
16395 .. 17297
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005198.1_g000003.1.cds

Sequence Viewer

Length: 903 bp
atggaaagtgttgagaatgaaatggatactatatatatggaagaaaatatggaatgtggggatgaagtggaaactgagagaagtaatgtagaaattgatatcgaaactactgggaatgaaacagtgacagaaaaggtaaaagaaccagagattggactagtgtttgactcaattgatgagctagagaagtattataaatcctatggaaaaggaatagggtttgaagtttgtgaaaggacatcaagcaaaggagatgatggggaattgaagtacataacattcacatgttcacgttttggcaagcgtagtagcaagtcaagacatgcatttaaattgcaaccagttgcaaaatcagattgcagggctaaattcaatgtaaatttactccctgatggaaaaaggttagtgtcctccattgtgcttgaacataatcatgatcttagtactccaagcaaaagacggttttataaaagctcaagagaattaccgccacatgttaaaaagaggttagcaacaaatgatatagctggtttaagaccaaaaaagaatttcaattcctttgtggttgaagccggtggacatgagaatataacattcctagagaaagatgtgataaattttcttgataaggtaaggcgtctgcgactaggggagggagatgctactgctattcaaaagtattttctgaaaatgcaagctgataactccaatttcttttatttaatggatataaatgaggagggtcgactaaggaatgtgttttgggaaaatacaagaagcagagctgcttacgaggaatttggtgatgctgtgacatttgacaccacatacttaacaaataagtatgacatgccatttgcaccttttgtaggtgtcaacatcatgggcaatcaatattactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

300

Amino Acids

34.57

Weight (kDa)

5.49

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 468
AccB7I CCANNNNNTGG 1 cut(s) 152
AccI GTMKAC 1 cut(s) 745
AciI CCGC 1 cut(s) 488
AcsI RAATTY 5 cut(s) 368, 379, 547, 616, 797
AcyI GRCGYC 1 cut(s) 637
AfaI GTAC 2 cut(s) 272, 445
AfiI CCNNNNNNNGG 2 cut(s) 152, 869
AflIII ACRYGT 2 cut(s) 284, 493
AgsI TTSAA 7 cut(s) 224, 268, 373, 425, 553, 569, 674
AhlI ACTAGT 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 5 cut(s) 181, 474, 527, 698, 785
AluI AGCT 5 cut(s) 181, 474, 527, 698, 785
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 5 cut(s) 368, 379, 547, 616, 797
ArsI GACNNNNNNTTYG 2 cut(s) 839, 871
AsuHPI GGTGA 1 cut(s) 815
BbvI GCAGC 1 cut(s) 772
BccI CCATC 2 cut(s) 251, 386
BciVI GTATCC 1 cut(s) 19
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 5 cut(s) 158, 182, 599, 647, 901
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 787
BmcAI AGTACT 1 cut(s) 445
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 649, 796
BmuI ACTGGG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 637
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 869
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 115, 341
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 152, 869
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 115, 341
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 1 cut(s) 772
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 152, 869
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 1 cut(s) 488
BspCNI CTCAG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 2 cut(s) 115, 341
BssAI RCCGGY 1 cut(s) 572
BssMI GATC 1 cut(s) 436
BssNI GRCGYC 1 cut(s) 637
Bst4CI ACNGT 2 cut(s) 124, 462
BstACI GRCGYC 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 302, 696
BstDEI CTNAG 3 cut(s) 75, 440, 749
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 439
BstMBI GATC 1 cut(s) 436
BstNSI RCATGY 4 cut(s) 288, 326, 497, 853
BstV1I GCAGC 1 cut(s) 772
BsuI GTATCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 302, 696
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 572
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 271, 444
CviAII CATG 7 cut(s) 285, 323, 434, 494, 581, 850, 883
CviJI RGCY 7 cut(s) 181, 365, 474, 527, 572, 698, 785
CviKI_1 RGCY 7 cut(s) 181, 365, 474, 527, 572, 698, 785
CviQI GTAC 2 cut(s) 271, 444
DdeI CTNAG 3 cut(s) 75, 440, 749
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraI TTTAAA 1 cut(s) 331
Eco32I GATATC 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoRV GATATC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 7 cut(s) 288, 326, 437, 497, 584, 853, 886
FatI CATG 7 cut(s) 284, 322, 433, 493, 580, 849, 882
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 1 cut(s) 786
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 5 cut(s) 158, 182, 599, 647, 901
GluI GCNGC 1 cut(s) 786
HapII CCGG 1 cut(s) 573
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 7 cut(s) 288, 326, 437, 497, 584, 853, 886
HincII GTYRAC 2 cut(s) 746, 877
HindII GTYRAC 2 cut(s) 746, 877
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 573
HphI GGTGA 1 cut(s) 815
Hpy166II GTNNAC 4 cut(s) 290, 578, 746, 877
Hpy188I TCNGA 2 cut(s) 355, 687
Hpy188III TCNNGA 4 cut(s) 318, 434, 477, 623
Hpy8I GTNNAC 4 cut(s) 290, 578, 746, 877
HpyCH4III ACNGT 2 cut(s) 124, 462
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 326, 337, 347, 360, 694, 860
HpyF3I CTNAG 3 cut(s) 75, 440, 749
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 7 cut(s) 288, 326, 437, 497, 584, 853, 886
Kzo9I GATC 1 cut(s) 436
LpnPI CCDG 7 cut(s) 96, 159, 346, 354, 402, 513, 586
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 2 cut(s) 649, 796
MaeI CTAG 5 cut(s) 158, 182, 599, 647, 901
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 124, 811
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 1 cut(s) 53
MfeI CAATTG 1 cut(s) 171
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 6 cut(s) 421, 498, 646, 730, 733, 787
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 5 cut(s) 330, 498, 533, 722, 833
MslI CAYNNNNRTG 2 cut(s) 283, 432
MspI CCGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 171
NdeII GATC 1 cut(s) 436
NlaIII CATG 7 cut(s) 288, 326, 437, 497, 584, 853, 886
NmuCI GTSAC 2 cut(s) 124, 811
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 4 cut(s) 288, 326, 497, 853
PagI TCATGA 1 cut(s) 433
PciI ACATGT 2 cut(s) 284, 493
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 2 cut(s) 284, 493
PsiI TTATAA 2 cut(s) 195, 468
RsaI GTAC 2 cut(s) 272, 445
RsaNI GTAC 2 cut(s) 271, 444
RseI CAYNNNNRTG 2 cut(s) 283, 432
SalI GTCGAC 1 cut(s) 744
SaqAI TTAA 5 cut(s) 330, 498, 533, 722, 833
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 1 cut(s) 436
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 1 cut(s) 161
SfaNI GCATC 2 cut(s) 649, 796
SmiI ATTTAAAT 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 283, 432
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SpeI ACTAGT 1 cut(s) 157
SsiI CCGC 1 cut(s) 488
SspI AATATT 1 cut(s) 896
SspMI CTAG 5 cut(s) 158, 182, 599, 647, 901
SwaI ATTTAAAT 1 cut(s) 331
TaaI ACNGT 2 cut(s) 124, 462
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 102, 745
TatI WGTACW 2 cut(s) 270, 443
Tru1I TTAA 5 cut(s) 330, 498, 533, 722, 833
Tru9I TTAA 5 cut(s) 330, 498, 533, 722, 833
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 124, 811
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 2 cut(s) 124, 811
TspDTI ATGAA 3 cut(s) 33, 78, 132
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 5 cut(s) 368, 379, 547, 616, 797
XceI RCATGY 4 cut(s) 288, 326, 497, 853
XmiI GTMKAC 1 cut(s) 745
XspI CTAG 5 cut(s) 158, 182, 599, 647, 901
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.