Rorug07G0274900

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000252
Physical Location & Seq
Forward (+)
26236792 .. 26237737
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0274900.1

Sequence Viewer

Length: 468 bp
ATGGCTTCACTTCTATGCGTAACAGGATCCTGGAATTCCCAATGTAGAAGAAAGTCCACCAAAACAGTATCACACAAATATGCAAGAGTGATGAATTCTTCATCAGCGCGCCAGCGGAATTTTGGTCATGACCAACACAGCAGAAGGAGCCATGTCAAGTTAGAAAGTAGCAGTCCTCGTTTGGAAAATGGAGATCATGTGAAGGGAAAAAAGAACAAGTTTGCCAAAGGAAGATCTGAGGCTCAAGAACACCGGGGGTTAGGCTTGTGGTACGTGACATCTTGTATCAGTCACATCTTAAGAAAGGCGAGAGCATTTTACAACGAGTTCTGCTGTGATGCAATATCTGATGGTGGTGATGACACAACTAGGAGGCAAGGATATAATTATGAAGTCATGTTGGTTGATCCATATTTTTCAATCCCAATTACTCCTTTTACCTCCCATGATTATTCTACCAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

155

Amino Acids

17.76

Weight (kDa)

9.65

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 109
AciI CCGC 1 cut(s) 115
AclWI GGATC 3 cut(s) 21, 34, 401
AcsI RAATTY 3 cut(s) 34, 94, 118
AfaI GTAC 2 cut(s) 272, 464
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 420
AjnI CCWGG 1 cut(s) 29
AlwI GGATC 3 cut(s) 21, 34, 401
ApoI RAATTY 3 cut(s) 34, 94, 118
AspLEI GCGC 2 cut(s) 109, 111
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 26
BccI CCATC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 298
BglII AGATCT 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 31, 254
BmiI GGNNCC 2 cut(s) 28, 149
BmrFI CCNGG 2 cut(s) 31, 254
BmsI GCATC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 228
BsePI GCGCGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 253
Bsp143I GATC 4 cut(s) 26, 193, 233, 406
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 28, 149
BspPI GGATC 3 cut(s) 21, 34, 401
BspTI CTTAAG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 253
BssHII GCGCGC 1 cut(s) 107
BssMI GATC 4 cut(s) 26, 193, 233, 406
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 109, 113
BstDEI CTNAG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 2 cut(s) 109, 111
BstKTI GATC 4 cut(s) 29, 196, 236, 409
BstMBI GATC 4 cut(s) 26, 193, 233, 406
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 252
BstUI CGCG 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 26, 233
BstYI RGATCY 2 cut(s) 26, 233
Cac8I GCNNGC 2 cut(s) 109, 113
CciI TCATGA 1 cut(s) 127
CfoI GCGC 2 cut(s) 109, 111
Csp6I GTAC 2 cut(s) 271, 463
CviAII CATG 5 cut(s) 128, 152, 197, 397, 446
CviJI RGCY 4 cut(s) 5, 150, 242, 264
CviKI_1 RGCY 4 cut(s) 5, 150, 242, 264
CviQI GTAC 2 cut(s) 271, 463
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 28, 195, 235, 408
DpnII GATC 4 cut(s) 26, 193, 233, 406
EcoRI GAATTC 2 cut(s) 34, 94
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 5 cut(s) 131, 155, 200, 400, 449
FatI CATG 5 cut(s) 127, 151, 196, 396, 445
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 108, 110
HapII CCGG 1 cut(s) 253
HhaI GCGC 2 cut(s) 109, 111
Hin1II CATG 5 cut(s) 131, 155, 200, 400, 449
Hin6I GCGC 2 cut(s) 107, 109
HinP1I GCGC 2 cut(s) 107, 109
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 238, 349
Hpy188III TCNNGA 2 cut(s) 128, 245
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 138, 196
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 83, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 5 cut(s) 131, 155, 200, 400, 449
HspAI GCGC 2 cut(s) 107, 109
Kzo9I GATC 4 cut(s) 26, 193, 233, 406
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 9, 16, 43, 125, 266
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 19, 274, 290
MalI GATC 4 cut(s) 28, 195, 235, 408
MboI GATC 4 cut(s) 26, 193, 233, 406
MboII GAAGA 3 cut(s) 60, 90, 243
MflI RGATCY 2 cut(s) 26, 233
MluCI AATT 5 cut(s) 34, 94, 118, 385, 426
MnlI CCTC 4 cut(s) 186, 232, 366, 451
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 2 cut(s) 13, 78
MspA1I CMGCKG 1 cut(s) 115
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 31, 254
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 254
NdeII GATC 4 cut(s) 26, 193, 233, 406
NlaIII CATG 5 cut(s) 131, 155, 200, 400, 449
NlaIV GGNNCC 2 cut(s) 28, 149
NmuCI GTSAC 2 cut(s) 274, 290
PagI TCATGA 1 cut(s) 127
PauI GCGCGC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 28, 149
PsuI RGATCY 2 cut(s) 26, 233
PteI GCGCGC 1 cut(s) 107
RsaI GTAC 2 cut(s) 272, 464
RsaNI GTAC 2 cut(s) 271, 463
RseI CAYNNNNRTG 2 cut(s) 13, 78
SaqAI TTAA 1 cut(s) 299
Sau3AI GATC 4 cut(s) 26, 193, 233, 406
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 31, 254
SetI ASST 2 cut(s) 276, 443
SfaNI GCATC 1 cut(s) 328
SmiMI CAYNNNNRTG 2 cut(s) 13, 78
SmlI CTYRAG 2 cut(s) 243, 298
SmoI CTYRAG 2 cut(s) 243, 298
Sse9I AATT 5 cut(s) 34, 94, 118, 385, 426
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 29, 252
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 276
TasI AATT 5 cut(s) 34, 94, 118, 385, 426
TatI WGTACW 1 cut(s) 462
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseFI GTSAC 2 cut(s) 274, 290
Tsp45I GTSAC 2 cut(s) 274, 290
TspDTI ATGAA 3 cut(s) 90, 107, 405
Vha464I CTTAAG 1 cut(s) 298
XapI RAATTY 3 cut(s) 34, 94, 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 369
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.