RLG00000013853

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000252
Physical Location & Seq
Reverse (-)
43019599 .. 43021812
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013853

Sequence Viewer

Length: 315 bp
ATGGAACAATTGTCCAACGAATCAGAGAACATTATTCTCACTAATGATCAAGGAACAGTGGATGATTCATCAAAGAGCTTAGAGAATAATCAAGAAACTGAGGTGGAAGAAATAATGCAAGTGCCCAATGTTGAGACGAGTTTTGATTCTATTGATGAGGATGAACTATCCAAACATGAGTCCAAGAACACTGGTGCTTATAGTGGTGCTGAACCAACGTCTGGCTCACCTATCAATAGATCTGGGAGTGACGTTGATGGTGCTTCAAATCCAGGTCAACATATACTTACTCCATTGGTAAATAAGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

105

Amino Acids

11.21

Weight (kDa)

4.1

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 267
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 126
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 128
BglII AGATCT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 67, 166
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 46, 239
BspCNI CTCAG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 196
BssMI GATC 2 cut(s) 46, 239
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 79, 99
BstF5I GGATG 2 cut(s) 67, 166
BstKTI GATC 2 cut(s) 49, 242
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 46, 239
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtsCI GGATG 2 cut(s) 67, 166
BtsIMutI CAGTG 2 cut(s) 63, 189
CviAII CATG 1 cut(s) 176
CviJI RGCY 2 cut(s) 78, 225
CviKI_1 RGCY 2 cut(s) 78, 225
DdeI CTNAG 2 cut(s) 79, 99
DpnI GATC 2 cut(s) 48, 241
DpnII GATC 2 cut(s) 46, 239
EcoRII CCWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 177, 201, 282, 284
FatI CATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 46
FokI GGATG 2 cut(s) 74, 173
Hin1II CATG 1 cut(s) 179
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HinfI GANTC 4 cut(s) 20, 65, 146, 179
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 218, 252
HpyCH4V TGCA 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 79, 99
HpySE526I ACGT 2 cut(s) 218, 252
Hsp92II CATG 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 239
LpnPI CCDG 5 cut(s) 177, 207, 228, 258, 285
MaeII ACGT 2 cut(s) 218, 252
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 48, 241
MboI GATC 2 cut(s) 46, 239
MboII GAAGA 1 cut(s) 119
MfeI CAATTG 1 cut(s) 8
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 2 cut(s) 94, 151
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 273
NdeII GATC 2 cut(s) 46, 239
NlaIII CATG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 248
PfeI GAWTC 3 cut(s) 20, 65, 146
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 239
Sau3AI GATC 2 cut(s) 46, 239
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 126
SetI ASST 6 cut(s) 80, 105, 221, 232, 255, 277
Sse9I AATT 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 2 cut(s) 221, 255
TasI AATT 1 cut(s) 8
TfiI GAWTC 3 cut(s) 20, 65, 146
TscAI CASTG 2 cut(s) 63, 196
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 57, 177
TspRI CASTG 2 cut(s) 63, 196
Van91I CCANNNNNTGG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.