Rh3BG359900

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000252
Physical Location & Seq
Reverse (-)
43278538 .. 43280433
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG359900.1

Sequence Viewer

Length: 426 bp
ATGCAAGAGCCTAGTGTTGAGATGAGTTTTGATTATATTGATGAGGCATATGACTACTATAGAAAATATGGGAAGCAATTAGGATTCCCAGTGAGAAAGAGAACATCAAGAAAGGGAGATGATGGGAGCACAAAATATATAACTATTTCATGTGGTCGAGCTGGAAAATTTGTAAGGTCAAGATTAAGAGGTCGTCTGCCATTGAAGAGAAACGCATCTAAGAAAGAGCAAGAGCAAGAGGTCAAAAACAAACAAAATAGAAGAAATAAGGTTCCATCCAATAAAAAGCCTAATCATGAAGGAGAAGGATCAAAGGTTTTTTCACCCCCACAAAGTGATGTCAATCCAAAGTACCATAAAAAAGATTGTTGGAAACAATTTAATGAAAAAATGATGGATGGTATGTATTCAAAATCTATGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

141

Amino Acids

16.62

Weight (kDa)

9.89

Isoelectric Point (pI)

73.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 1 cut(s) 353
AgsI TTSAA 2 cut(s) 205, 411
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 131
AlwI GGATC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 131
BccI CCATC 4 cut(s) 116, 283, 388, 392
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 342
BseGI GGATG 2 cut(s) 275, 403
BseJI GATNNNNATC 1 cut(s) 342
BseNI ACTGG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 308
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 89
BssMI GATC 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 275, 403
BstKTI GATC 1 cut(s) 311
BstMBI GATC 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 58
BtsCI GGATG 2 cut(s) 275, 403
BtsIMutI CAGTG 1 cut(s) 96
CciI TCATGA 1 cut(s) 295
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 150, 296
CviJI RGCY 3 cut(s) 10, 161, 289
CviKI_1 RGCY 3 cut(s) 10, 161, 289
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
DraIII CACNNNGTG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
FaeI CATG 2 cut(s) 153, 299
FatI CATG 2 cut(s) 149, 295
FauNDI CATATG 1 cut(s) 49
FokI GGATG 2 cut(s) 262, 410
FspBI CTAG 1 cut(s) 12
Hin1II CATG 2 cut(s) 153, 299
HinfI GANTC 1 cut(s) 84
HphI GGTGA 1 cut(s) 315
Hpy188III TCNNGA 3 cut(s) 108, 180, 296
HpyAV CCTTC 2 cut(s) 293, 299
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 2 cut(s) 153, 299
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 2 cut(s) 102, 147
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 12
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 2 cut(s) 217, 273
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 3 cut(s) 77, 167, 377
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 3 cut(s) 37, 182, 232
MseI TTAA 3 cut(s) 185, 381, 424
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 308
NlaIII CATG 2 cut(s) 153, 299
NlaIV GGNNCC 1 cut(s) 273
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 273
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 185, 381, 424
Sau3AI GATC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 163, 179, 193, 243, 273, 318
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 58
Sse9I AATT 3 cut(s) 77, 167, 377
SspMI CTAG 1 cut(s) 12
TaqI TCGA 1 cut(s) 157
TasI AATT 3 cut(s) 77, 167, 377
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 3 cut(s) 185, 381, 424
Tru9I TTAA 3 cut(s) 185, 381, 424
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 138, 312, 399
TspRI CASTG 1 cut(s) 96
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.