FvH4_4g07801

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000252
Physical Location & Seq
Reverse (-)
7306982 .. 7309177
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07801.t1

Sequence Viewer

Length: 1563 bp
ATGCAAGCTAAGAATGCTAATTTTTTCTATGCGATTGATATAAATGAAAAGGGTCGGTTGAGAAATTTGTTTTGGGCAGATGCAAGGAGTAGGGCGGCATACCAGGAATTTGGCGATGTTGTTACATTTAACACCACGTATTTGACGAATAAGTATGAAATGCCCTTTGCTCCATTTGTGGGGGTCAATCATCACAGCCAATCAATATTACTTGGATGTGGATTGATTTCAAGTGAAGATACCGAGACATTTGTTTGGTTGTTCAAGTCTTGGCTAGCATGCATGTCTGGGAATGCTCCTGGTGGTATAATTACTGATCAAGATAGAGCCATGAGAAATGCCACTGAGATTGTCTTCCCAAATACTAGGCATCGTTGGTGCTTGTGGCATATATTGAAGAAGATTCCTGACAAGTTGAAAGGATATGCTGATTATGAATCTATCTCGATGACATTGCTAAATACAGTTTACGATTCATTATCTCGTGATGAGTTTGAGAGACATTGGGATGAGATGATTACGAAATATAAGCTACATGAAAATGATTGGTTAAATGTCATGTATCAGCAGAGACATAGTTGGGTTCCAAGCTATGTCAAAGATTGTTTTTGGGCAGGAATGTCTACCACACAGCGAAGTGAAAGTATGAATTCATTTTTTGATGGCCATGTCAATTCCAAGACTACCCTGAAGCAATTTGTTGAGCAATATGAAAATGCATTGAGAAGCAAGGTGGAAAAAGAAAACTATGAAGATTTCAAGTGTTTCTCGTACAGTCTTCCCGGTGCAACTCATTACAATATGGAAAAACAAGCACAAGACATTTACACAACTTCGAAGTTCAAAGAGTTTCGAGATGAATTGACAGATAAATATATCATGAGAAGGTGGAGGAAGGATGTGAAAAGATGTCACACAAGGGTTCAAATTAGTTATGGTGGATGGGATGCTAGACCTGAGTCACAAAGGCTTGACATGATGCAGAAGAATTTTGACGACATTAAGGACTCATCATATGATTCTGAAGATAAGTGCATGATTGTTATGACTTGGTTGAATAACCTAAAGGAAGAACTGTCCAAACATGAGTCCAAGAACTCTGGTGCTTGTGGTGGTGCTGAACCAGTACCTAGTTCATCTGTCAACAGAAACGTGAGTGACGCTGATGGAATTTCAAATCCAAGTCAACATATACTTACTCCACTGGTAAATAAGAGAAAGGGCCGCCCACCATCTAAAAGGAAGATGTCTAAGGTCGAGGAAGAAGTAAGAAAGAAGCAAAAAAGAGAACAAAAGAAAAAATGTGGTGAGACTGGTACTAATGAAGAACTAGGAGCAAAGGGGTCAAGAACAAGAGGTCGCCCGCCATTGAAAAAAAATGATTCTCCGGAAGAACAACCGCAAGGGGTCAAAAACAAAAAACAAAATCGGAGAAATAAGGTATCATCCAATAAAAATTCTGATCATGAAGGAGAAGGATTGAAGGATTTTCCACCCTCACAAAATGATGTCAACCCAAAAAGAGTGCGTGTACCATCCAGAAGATTGTTGGAAACAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

521

Amino Acids

60.49

Weight (kDa)

9.17

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 40 - 134 4e-34 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 623
AccIII TCCGGA 1 cut(s) 1387
AciI CCGC 4 cut(s) 95, 1225, 1364, 1400
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 6 cut(s) 64, 107, 649, 988, 1170, 1456
AcuI CTGAAG 2 cut(s) 710, 1044
AfaI GTAC 4 cut(s) 773, 1128, 1318, 1533
AfiI CCNNNNNNNGG 1 cut(s) 179
AjnI CCWGG 2 cut(s) 102, 298
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 3 cut(s) 8, 532, 591
AluI AGCT 3 cut(s) 8, 532, 591
Alw26I GTCTC 4 cut(s) 239, 493, 565, 1304
Aor13HI TCCGGA 1 cut(s) 1387
AoxI GGCC 2 cut(s) 664, 1222
ApoI RAATTY 6 cut(s) 64, 107, 649, 988, 1170, 1456
AspS9I GGNCC 1 cut(s) 1222
AsuC2I CCSGG 1 cut(s) 783
AsuHPI GGTGA 1 cut(s) 1319
AsuII TTCGAA 1 cut(s) 836
AsuNHI GCTAGC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 666
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 346, 770
BccI CCATC 5 cut(s) 656, 936, 1160, 1240, 1543
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 2 cut(s) 104, 300
BclI TGATCA 2 cut(s) 316, 1462
BcnI CCSGG 1 cut(s) 783
BcoDI GTCTC 4 cut(s) 239, 493, 565, 1304
BfaI CTAG 5 cut(s) 275, 366, 951, 1131, 1331
BisI GCNGC 2 cut(s) 96, 1225
BlsI GCNGC 2 cut(s) 97, 1226
Bme1390I CCNGG 3 cut(s) 104, 300, 783
BmgT120I GGNCC 1 cut(s) 1222
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 3 cut(s) 104, 300, 783
BmsI GCATC 4 cut(s) 70, 379, 937, 969
BmtI GCTAGC 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 958
BpiI GAAGAC 2 cut(s) 346, 770
Bpu14I TTCGAA 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 783
BsaAI YACGTR 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 1387
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 1124, 1209, 1318
Bse3DI GCAATG 1 cut(s) 452
BseAI TCCGGA 1 cut(s) 1387
BseBI CCWGG 2 cut(s) 104, 300
BseGI GGATG 7 cut(s) 221, 514, 904, 947, 952, 1445, 1535
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 336, 948
BseNI ACTGG 3 cut(s) 1124, 1209, 1318
BshFI GGCC 2 cut(s) 666, 1224
BsiSI CCGG 2 cut(s) 783, 1388
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 4 cut(s) 239, 493, 565, 1304
BsmI GAATGC 2 cut(s) 19, 298
BsnI GGCC 2 cut(s) 666, 1224
Bsp119I TTCGAA 1 cut(s) 836
Bsp13I TCCGGA 1 cut(s) 1387
Bsp143I GATC 2 cut(s) 316, 1462
BspACI CCGC 4 cut(s) 95, 1225, 1364, 1400
BspANI GGCC 2 cut(s) 666, 1224
BspCNI CTCAG 2 cut(s) 337, 949
BspEI TCCGGA 1 cut(s) 1387
BspHI TCATGA 2 cut(s) 879, 1465
BspLI GGNNCC 1 cut(s) 585
BspOI GCTAGC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 3 cut(s) 1124, 1209, 1318
BssMI GATC 2 cut(s) 316, 1462
BssSI CACGAG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 104, 300
Bst4CI ACNGT 3 cut(s) 466, 776, 1077
BstBAI YACGTR 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 4 cut(s) 6, 276, 280, 1364
BstDEI CTNAG 4 cut(s) 9, 345, 957, 1251
BstF5I GGATG 7 cut(s) 221, 514, 904, 947, 952, 1445, 1535
BstKTI GATC 2 cut(s) 319, 1465
BstMAI GTCTC 4 cut(s) 239, 493, 565, 1304
BstMBI GATC 2 cut(s) 316, 1462
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 104, 300
BstNSI RCATGY 2 cut(s) 282, 286
BstPAI GACNNNNGTC 1 cut(s) 958
BstSCI CCNGG 3 cut(s) 102, 298, 781
BstV2I GAAGAC 2 cut(s) 346, 770
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 2 cut(s) 666, 1224
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 7 cut(s) 221, 514, 904, 947, 952, 1445, 1535
BtsIMutI CAGTG 2 cut(s) 342, 1202
Cac8I GCNNGC 4 cut(s) 6, 276, 280, 1364
CciI TCATGA 2 cut(s) 879, 1465
Cfr13I GGNCC 1 cut(s) 1222
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 4 cut(s) 772, 1127, 1317, 1532
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviJI RGCY 9 cut(s) 8, 198, 274, 329, 532, 591, 666, 970, 1224
CviKI_1 RGCY 9 cut(s) 8, 198, 274, 329, 532, 591, 666, 970, 1224
CviQI GTAC 4 cut(s) 772, 1127, 1317, 1532
DdeI CTNAG 4 cut(s) 9, 345, 957, 1251
DpnI GATC 2 cut(s) 318, 1464
DpnII GATC 2 cut(s) 316, 1462
EaeI YGGCCR 1 cut(s) 664
Eco57I CTGAAG 2 cut(s) 710, 1044
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 102, 298
EcoT22I ATGCAT 2 cut(s) 284, 721
FauI CCCGC 1 cut(s) 1371
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 2 cut(s) 316, 1462
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 2 cut(s) 96, 1225
FokI GGATG 7 cut(s) 228, 521, 911, 954, 959, 1432, 1522
Fsp4HI GCNGC 2 cut(s) 96, 1225
FspBI CTAG 5 cut(s) 275, 366, 951, 1131, 1331
GluI GCNGC 2 cut(s) 96, 1225
HaeIII GGCC 2 cut(s) 666, 1224
HapII CCGG 2 cut(s) 783, 1388
HgaI GACGC 1 cut(s) 1169
HincII GTYRAC 3 cut(s) 1144, 1187, 1513
HindII GTYRAC 3 cut(s) 1144, 1187, 1513
HinfI GANTC 8 cut(s) 403, 437, 473, 959, 1007, 1019, 1088, 1382
HpaII CCGG 2 cut(s) 783, 1388
HphI GGTGA 1 cut(s) 1319
Hpy166II GTNNAC 6 cut(s) 469, 624, 1144, 1187, 1513, 1532
Hpy188I TCNGA 3 cut(s) 1024, 1431, 1462
Hpy8I GTNNAC 6 cut(s) 469, 624, 1144, 1187, 1513, 1532
HpyAV CCTTC 5 cut(s) 879, 889, 1463, 1469, 1477
HpyCH4III ACNGT 3 cut(s) 466, 776, 1077
HpyCH4IV ACGT 2 cut(s) 137, 1152
HpyCH4V TGCA 7 cut(s) 4, 83, 282, 719, 788, 982, 1035
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 4 cut(s) 9, 345, 957, 1251
HpySE526I ACGT 2 cut(s) 137, 1152
Kpn2I TCCGGA 1 cut(s) 1387
Ksp22I TGATCA 2 cut(s) 316, 1462
Kzo9I GATC 2 cut(s) 316, 1462
LmnI GCTCC 3 cut(s) 175, 301, 1334
LweI GCATC 4 cut(s) 70, 379, 937, 969
MaeI CTAG 5 cut(s) 275, 366, 951, 1131, 1331
MaeII ACGT 2 cut(s) 137, 1152
MaeIII GTNAC 4 cut(s) 121, 911, 960, 1157
MalI GATC 2 cut(s) 318, 1464
MboI GATC 2 cut(s) 316, 1462
MlsI TGGCCA 1 cut(s) 666
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 3 cut(s) 968, 1001, 1097
MmeI TCCRAC 1 cut(s) 1530
MnlI CCTC 4 cut(s) 885, 1252, 1349, 1507
Mox20I TGGCCA 1 cut(s) 666
Mph1103I ATGCAT 2 cut(s) 284, 721
MroI TCCGGA 1 cut(s) 1387
MscI TGGCCA 1 cut(s) 666
MseI TTAA 3 cut(s) 129, 551, 1002
MslI CAYNNNNRTG 2 cut(s) 507, 540
Msp20I TGGCCA 1 cut(s) 666
MspI CCGG 2 cut(s) 783, 1388
MspR9I CCNGG 3 cut(s) 104, 300, 783
Mva1269I GAATGC 2 cut(s) 19, 298
MvaI CCWGG 2 cut(s) 104, 300
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 783
NdeI CATATG 1 cut(s) 1015
NdeII GATC 2 cut(s) 316, 1462
NheI GCTAGC 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 585
NmuCI GTSAC 3 cut(s) 911, 960, 1157
NsiI ATGCAT 2 cut(s) 284, 721
NspI RCATGY 2 cut(s) 282, 286
NspV TTCGAA 1 cut(s) 836
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 2 cut(s) 879, 1465
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 2 cut(s) 19, 298
PfeI GAWTC 5 cut(s) 403, 437, 473, 1019, 1382
PkrI GCNGC 2 cut(s) 97, 1226
PleI GAGTC 3 cut(s) 967, 1001, 1096
PpsI GAGTC 3 cut(s) 967, 1001, 1096
Ppu21I YACGTR 1 cut(s) 138
PshAI GACNNNNGTC 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 102, 298
PspGI CCWGG 2 cut(s) 102, 298
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 1222
RsaI GTAC 4 cut(s) 773, 1128, 1318, 1533
RsaNI GTAC 4 cut(s) 772, 1127, 1317, 1532
RseI CAYNNNNRTG 2 cut(s) 507, 540
SaqAI TTAA 3 cut(s) 129, 551, 1002
SatI GCNGC 2 cut(s) 96, 1225
Sau3AI GATC 2 cut(s) 316, 1462
Sau96I GGNCC 1 cut(s) 1222
SchI GAGTC 3 cut(s) 968, 1001, 1097
ScrFI CCNGG 3 cut(s) 104, 300, 783
SfaNI GCATC 4 cut(s) 70, 379, 937, 969
SfuI TTCGAA 1 cut(s) 836
SmiMI CAYNNNNRTG 2 cut(s) 507, 540
SphI GCATGC 1 cut(s) 282
SsiI CCGC 4 cut(s) 95, 1225, 1364, 1400
SspI AATATT 1 cut(s) 207
SspMI CTAG 5 cut(s) 275, 366, 951, 1131, 1331
StyD4I CCNGG 3 cut(s) 102, 298, 781
TaaI ACNGT 3 cut(s) 466, 776, 1077
TaiI ACGT 2 cut(s) 140, 1155
TaqI TCGA 4 cut(s) 446, 836, 853, 1257
TauI GCSGC 2 cut(s) 98, 1227
TfiI GAWTC 5 cut(s) 403, 437, 473, 1019, 1382
Tru1I TTAA 3 cut(s) 129, 551, 1002
Tru9I TTAA 3 cut(s) 129, 551, 1002
TscAI CASTG 2 cut(s) 349, 1209
TseFI GTSAC 3 cut(s) 911, 960, 1157
Tsp45I GTSAC 3 cut(s) 911, 960, 1157
TspRI CASTG 2 cut(s) 349, 1209
XapI RAATTY 6 cut(s) 64, 107, 649, 988, 1170, 1456
XceI RCATGY 2 cut(s) 282, 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 1546
XmiI GTMKAC 1 cut(s) 623
XspI CTAG 5 cut(s) 275, 366, 951, 1131, 1331
Zsp2I ATGCAT 2 cut(s) 284, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.