Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Forward (+)

53534168 .. 53536785

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGCCAAAGCCGCAGGGACGGCAATGGTACGAGTGCATGACCATACGGAGCACAAAAACGGAAACCCCATTTACGCTTGAGCTTTTGGTCAGACCAGCGCCCACTCTTCACTCTTGTTGCTCCCCCGAGATCTCTCATCAGATGGATGAAGTTTCTCTCAACACGGAGCCAGCGGGCGAGGATGATGCTGATGGGTATGAGATTGAAGGAGACTGTGCAATGACAGAGTTTGTAAGTCAAACTGGCATTATGCAAGGAGAGAATCCTCTCCCTCCTTCGGCTGGAATGGAGTTTGATTCTTATGAGGATGTATATTACTTCTACAATTGCTATGCTAAGCAACAGGGGTTTGGGGTTAGAGTGAGTAATACATGGTATAGAAAGAGCAAGGAAAGGTACAGAGGAAAGCTTAGCTGCAGTAGTGCAGGTTTCAAAAAGAAGAGTGAAGCTAATCGCCCAAGGCCGGAGACTAGAACCGGTTGTCCAGCAATGGTGAAGTTCAGGTTAATGGAATCCAACAGGTGGAGAATTATTGAAGTTGAGCTCGAGCACAACCATTTGATCAGTCCAGCAAGTGGCAAATTTTATAAATCACACAAGAGCATAGGTGGTGGAACCAAAAGATCATTGCAGTTGGATAGTGCTGAAGAAGTACAAAAGATAAGGCTATTCCGAACGGTGATTATTGATTCTGAGGGTAACAGAAGCATAGATGTTGACGAAGGAGAATCTGGTAATAAAGTTGACTACTCCAATCAATTGAAGCTTAAAGAAGGAGATGCCAAAGCTGTTCAGAATTTCTTTTCTCGCTTGCAATTGATGGATCCAGACTTCTTTTATGTAGTGGATCTAAATGAGAAAGGATGCTTGAGAAATTTGTTTTGGGCTGATGCGAGGAGTAGGGTTGCTTACACTTATTTCAGTGACGTAGTTGCCATTGACACTACATGCTTGGAAAACAAATTTGAAGTCCCATTGGTCTCATTCAGTGGAGTCAATCACCATGGACAATCCGTGCTGCTGGGTTTTGGTTTAATTGCAAGTGGGACTATTGAATCCTATACATGGTTGTTTAGAGCTTGGCTTACATGCATATTGGGACGTCCTCCACAAGCCATCATAACTGACCAATGCAGAACATTACAAACTGCTATTGCTGATGTTTTCCCTAGAGCTTCTCATTGTCTTTGCTTGTCTCAAATAATGCACAAGATTCCAGAAAATTTGGGAGGTTCATTTGAGTATGAGGTAATTAAAGCAGCTTTTATTAGAGCAGTTTACTACTCTTTGAGGGTGGAGGAATTTGAAGCAGCCTGGGAGGATATGGTCCAGCGTCATGGAATTAGAGATCATAAATGGCTTCAAGCATTATATGATGATCGAAAGCGGTGGGTTCCAGTATATTTGAAGGATATATTTTTGGCAGGAATGTTTCCTATGCAACCAAATGAGGTTGTCTCTTCATTTTCTGAAGAATTTCTGGTTAAAAGTACTCCTCTGAAGGAATTTCTAGATAAGTATGATCAAGCTCTGCAGACTCATCATCAGCTGGAAGCCTTGGCAGATTTGGATTCAAGAAACTCAAGTTATATGTTCAAATCGGGAAGTCATTTTGAGTTGCAACTCTCGGAACTGTACACTAATGACATCTTAAGGAAGTTTGGAAAGGAGGTAGAGGGGATGTACTCTTGTTTTAGCACAAGACAATTAAATGTCGATGGGCCAGTCATTACATATACAGTGAAGGAACAAACTGAAGTTGATGGAAATAGCAGAGAGATGAGAGATTATGAGGTTTTGTATAATCCATCTGAGATGGAGGTCCTTTGCGTCTGTGGTATGTTCAACTTGAAAGGATATTTATGCAGGCATGCGCTCTCCATCCTAAACCAAAATGGCATGCAGGAGATTCCAACTCAATACATTCTTTCACGATGGAGAAAAGATGTTAAGCGCAGTTATGTTTATGATCACAGCTGCAGTGGCATTGATATTAATAACCCAGTTCACAGGTACGATCATCTGTATAAATGCATCGTGCAGGTTGTGGAGGAAGGGAGGAAATCACAAGACCGTTACAAGATTGCATTGCAGGAATTGGATGGGATATTGAACAAGCTTTGTATTACAGAAGATTGTGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

715

Amino Acids

82.15

Weight (kDa)

5.74

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	107 - 188	1.2e-21	FAR1 DNA-binding domain
MULE	PF10551	310 - 404	4.6e-27	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AatII	GACGTC	1 cut(s)	1105
Acc36I	ACCTGC	2 cut(s)	416, 2032
AccB7I	CCANNNNNTGG	2 cut(s)	522, 575
AciI	CCGC	3 cut(s)	11, 173, 1387
AclWI	GGATC	3 cut(s)	818, 831, 855
AcsI	RAATTY	8 cut(s)	581, 796, 874, 962, 1222, 1301, 1475, 1505
AcuI	CTGAAG	4 cut(s)	666, 1491, 1520, 1776
AcyI	GRCGYC	1 cut(s)	1102
AfaI	GTAC	7 cut(s)	29, 398, 654, 1492, 1637, 1685, 2015
AfiI	CCNNNNNNNGG	6 cut(s)	277, 281, 463, 522, 575, 1065
AflII	CTTAAG	1 cut(s)	1651
AgeI	ACCGGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	1313
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AloI	GAACNNNNNNTCC	2 cut(s)	466, 498
Alw21I	GWGCWC	3 cut(s)	53, 546, 552
Alw26I	GTCTC	5 cut(s)	204, 461, 985, 1200, 1462
AlwI	GGATC	3 cut(s)	818, 831, 855
Ama87I	CYCGRG	2 cut(s)	125, 545
AoxI	GGCC	2 cut(s)	461, 1721
ApeKI	GCWGC	5 cut(s)	414, 1018, 1259, 1310, 1977
ApoI	RAATTY	8 cut(s)	581, 796, 874, 962, 1222, 1301, 1475, 1505
ArsI	GACNNNNNNTTYG	2 cut(s)	954, 986
AseI	ATTAAT	1 cut(s)	1995
AsiGI	ACCGGT	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	1476
AspLEI	GCGC	3 cut(s)	100, 1876, 1956
AspS9I	GGNCC	3 cut(s)	1327, 1721, 1822
AsuHPI	GGTGA	3 cut(s)	505, 691, 992
AvaI	CYCGRG	2 cut(s)	125, 545
AvaII	GGWCC	2 cut(s)	1327, 1822
BamHI	GGATCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	3 cut(s)	53, 546, 552
BbvI	GCAGC	5 cut(s)	401, 1005, 1271, 1322, 1964
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	1315
BclI	TGATCA	3 cut(s)	561, 1522, 1969
BcoDI	GTCTC	5 cut(s)	204, 461, 985, 1200, 1462
BfaI	CTAG	3 cut(s)	471, 1170, 1511
BfmI	CTRYAG	3 cut(s)	415, 1532, 1978
BfoI	RGCGCY	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	1651
BfuAI	ACCTGC	2 cut(s)	416, 2032
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	6 cut(s)	11, 415, 1019, 1260, 1311, 1978
BlpI	GCTNAGC	2 cut(s)	336, 410
BlsI	GCNGC	6 cut(s)	12, 416, 1020, 1261, 1312, 1979
BmcAI	AGTACT	1 cut(s)	1492
Bme1390I	CCNGG	1 cut(s)	1315
Bme18I	GGWCC	2 cut(s)	1327, 1822
BmeT110I	CYCGRG	2 cut(s)	125, 545
BmgT120I	GGNCC	3 cut(s)	1327, 1721, 1822
BmiI	GGNNCC	4 cut(s)	168, 616, 825, 1395
BmrFI	CCNGG	1 cut(s)	1315
BmrI	ACTGGG	1 cut(s)	1997
BmsI	GCATC	5 cut(s)	175, 769, 854, 880, 2043
BmuI	ACTGGG	1 cut(s)	1997
BplI	GAGNNNNNCTC	2 cut(s)	1442, 1474
Bpu1102I	GCTNAGC	2 cut(s)	336, 410
BpuEI	CTTGAG	3 cut(s)	98, 889, 1567
BsaHI	GRCGYC	1 cut(s)	1102
BsaI	GGTCTC	1 cut(s)	985
BsaJI	CCNNGG	4 cut(s)	458, 1003, 1314, 1557
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	6 cut(s)	277, 281, 463, 522, 575, 1065
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	4 cut(s)	247, 1397, 1724, 2003
Bse3DI	GCAATG	5 cut(s)	29, 225, 495, 626, 2087
BseBI	CCWGG	1 cut(s)	1315
BseDI	CCNNGG	4 cut(s)	458, 1003, 1314, 1557
BseGI	GGATG	7 cut(s)	151, 187, 313, 869, 1686, 1881, 2107
BseLI	CCNNNNNNNGG	6 cut(s)	277, 281, 463, 522, 575, 1065
BseMI	GCAATG	5 cut(s)	29, 225, 495, 626, 2087
BseMII	CTCAG	2 cut(s)	684, 1803
BseNI	ACTGG	4 cut(s)	247, 1397, 1724, 2003
BseRI	GAGGAG	2 cut(s)	910, 1485
BseXI	GCAGC	5 cut(s)	401, 1005, 1271, 1322, 1964
BseYI	CCCAGC	1 cut(s)	1021
BsgI	GTGCAG	2 cut(s)	444, 2060
BshFI	GGCC	2 cut(s)	463, 1723
BshTI	ACCGGT	1 cut(s)	476
BsiHKAI	GWGCWC	3 cut(s)	53, 546, 552
BsiHKCI	CYCGRG	2 cut(s)	125, 545
BsiSI	CCGG	2 cut(s)	464, 477
BslFI	GGGAC	4 cut(s)	30, 956, 1060, 1113
BslI	CCNNNNNNNGG	6 cut(s)	277, 281, 463, 522, 575, 1065
BsmAI	GTCTC	5 cut(s)	204, 461, 985, 1200, 1462
BsmFI	GGGAC	4 cut(s)	30, 956, 1060, 1113
BsnI	GGCC	2 cut(s)	463, 1723
Bso31I	GGTCTC	1 cut(s)	985
BsoBI	CYCGRG	2 cut(s)	125, 545
Bsp1286I	GDGCHC	3 cut(s)	53, 546, 552
Bsp1407I	TGTACA	1 cut(s)	1635
Bsp1720I	GCTNAGC	2 cut(s)	336, 410
Bsp19I	CCATGG	1 cut(s)	1003
BspACI	CCGC	3 cut(s)	11, 173, 1387
BspANI	GGCC	2 cut(s)	463, 1723
BspCNI	CTCAG	2 cut(s)	685, 1804
BspLI	GGNNCC	4 cut(s)	168, 616, 825, 1395
BspMAI	CTGCAG	3 cut(s)	419, 1536, 1982
BspMI	ACCTGC	2 cut(s)	416, 2032
BspPI	GGATC	3 cut(s)	818, 831, 855
BspTI	CTTAAG	1 cut(s)	1651
BspTNI	GGTCTC	1 cut(s)	985
BsrDI	GCAATG	5 cut(s)	29, 225, 495, 626, 2087
BsrFI	RCCGGY	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	1635
BsrI	ACTGG	4 cut(s)	247, 1397, 1724, 2003
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	458, 1003, 1314, 1557
BssNI	GRCGYC	1 cut(s)	1102
BssT1I	CCWWGG	3 cut(s)	458, 1003, 1557
Bst2UI	CCWGG	1 cut(s)	1315
Bst4CI	ACNGT	5 cut(s)	215, 679, 1635, 1741, 2075
Bst6I	CTCTTC	3 cut(s)	111, 434, 1465
BstACI	GRCGYC	1 cut(s)	1102
BstAFI	CTTAAG	1 cut(s)	1651
BstAUI	TGTACA	1 cut(s)	1635
BstC8I	GCNNGC	6 cut(s)	171, 175, 812, 1868, 1872, 1901
BstDEI	CTNAG	4 cut(s)	336, 410, 693, 1812
BstDSI	CCRYGG	1 cut(s)	1003
BstF5I	GGATG	7 cut(s)	151, 187, 313, 869, 1686, 1881, 2107
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	3 cut(s)	100, 1876, 1956
BstMAI	GTCTC	5 cut(s)	204, 461, 985, 1200, 1462
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 19, 1983
BstNI	CCWGG	1 cut(s)	1315
BstNSI	RCATGY	4 cut(s)	951, 1092, 1874, 1903
BstSCI	CCNGG	1 cut(s)	1313
BstSFI	CTRYAG	3 cut(s)	415, 1532, 1978
BstV1I	GCAGC	5 cut(s)	401, 1005, 1271, 1322, 1964
BstX2I	RGATCY	3 cut(s)	129, 823, 847
BstXI	CCANNNNNNTGG	1 cut(s)	1337
BstYI	RGATCY	3 cut(s)	129, 823, 847
BsuRI	GGCC	2 cut(s)	463, 1723
BtgI	CCRYGG	1 cut(s)	1003
BtsCI	GGATG	7 cut(s)	151, 187, 313, 869, 1686, 1881, 2107
BtsI	GCAGTG	1 cut(s)	1987
BtsIMutI	CAGTG	4 cut(s)	928, 994, 1746, 1987
BveI	ACCTGC	2 cut(s)	416, 2032
Cac8I	GCNNGC	6 cut(s)	171, 175, 812, 1868, 1872, 1901
CfoI	GCGC	3 cut(s)	100, 1876, 1956
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	1327, 1721, 1822
CseI	GACGC	2 cut(s)	1322, 1819
Csp6I	GTAC	7 cut(s)	28, 397, 653, 1491, 1636, 1684, 2014
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	9 cut(s)	37, 372, 948, 1004, 1065, 1089, 1337, 1871, 1900
CviQI	GTAC	7 cut(s)	28, 397, 653, 1491, 1636, 1684, 2014
DdeI	CTNAG	4 cut(s)	336, 410, 693, 1812
Eam1104I	CTCTTC	3 cut(s)	111, 434, 1465
EarI	CTCTTC	3 cut(s)	111, 434, 1465
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	3 cut(s)	458, 1003, 1557
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	985
Eco47I	GGWCC	2 cut(s)	1327, 1822
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	4 cut(s)	666, 1491, 1520, 1776
Eco88I	CYCGRG	2 cut(s)	125, 545
EcoICRI	GAGCTC	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	1822
EcoRII	CCWGG	1 cut(s)	1313
EcoT14I	CCWWGG	3 cut(s)	458, 1003, 1557
EcoT22I	ATGCAT	2 cut(s)	1094, 2036
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	3 cut(s)	458, 1003, 1557
FaeI	CATG	9 cut(s)	40, 375, 951, 1007, 1068, 1092, 1340, 1874, 1903
FaqI	GGGAC	4 cut(s)	30, 956, 1060, 1113
FatI	CATG	9 cut(s)	36, 371, 947, 1003, 1064, 1088, 1336, 1870, 1899
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	3 cut(s)	561, 1522, 1969
Fnu4HI	GCNGC	6 cut(s)	11, 415, 1019, 1260, 1311, 1978
FokI	GGATG	7 cut(s)	158, 194, 320, 876, 1693, 1868, 2114
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	6 cut(s)	11, 415, 1019, 1260, 1311, 1978
FspBI	CTAG	3 cut(s)	471, 1170, 1511
GlaI	GCGC	3 cut(s)	99, 1875, 1955
GluI	GCNGC	6 cut(s)	11, 415, 1019, 1260, 1311, 1978
GsaI	CCCAGC	1 cut(s)	1025
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	463, 1723
HapII	CCGG	2 cut(s)	464, 477
HgaI	GACGC	2 cut(s)	1322, 1819
HhaI	GCGC	3 cut(s)	100, 1876, 1956
Hin1I	GRCGYC	1 cut(s)	1102
Hin1II	CATG	9 cut(s)	40, 375, 951, 1007, 1068, 1092, 1340, 1874, 1903
Hin6I	GCGC	3 cut(s)	98, 1874, 1954
HinP1I	GCGC	3 cut(s)	98, 1874, 1954
HincII	GTYRAC	2 cut(s)	718, 745
HindII	GTYRAC	2 cut(s)	718, 745
HindIII	AAGCTT	3 cut(s)	407, 764, 2117
HpaII	CCGG	2 cut(s)	464, 477
HphI	GGTGA	3 cut(s)	505, 691, 992
Hpy166II	GTNNAC	5 cut(s)	718, 745, 1279, 1638, 2008
Hpy188I	TCNGA	9 cut(s)	92, 141, 674, 694, 795, 1471, 1500, 1630, 1813
Hpy188III	TCNNGA	6 cut(s)	827, 1217, 1511, 1575, 1602, 1932
Hpy8I	GTNNAC	5 cut(s)	718, 745, 1279, 1638, 2008
HpyAV	CCTTC	8 cut(s)	200, 285, 716, 767, 1402, 1495, 1738, 2048
HpyCH4III	ACNGT	5 cut(s)	215, 679, 1635, 1741, 2075
HpyCH4IV	ACGT	2 cut(s)	927, 1102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 19, 1983
HpyF3I	CTNAG	4 cut(s)	336, 410, 693, 1812
HpySE526I	ACGT	2 cut(s)	927, 1102
Hsp92I	GRCGYC	1 cut(s)	1102
Hsp92II	CATG	9 cut(s)	40, 375, 951, 1007, 1068, 1092, 1340, 1874, 1903
HspAI	GCGC	3 cut(s)	98, 1874, 1954
Ksp22I	TGATCA	3 cut(s)	561, 1522, 1969
LmnI	GCTCC	3 cut(s)	48, 125, 166
Lsp1109I	GCAGC	5 cut(s)	401, 1005, 1271, 1322, 1964
LweI	GCATC	5 cut(s)	175, 769, 854, 880, 2043
MaeI	CTAG	3 cut(s)	471, 1170, 1511
MaeII	ACGT	2 cut(s)	927, 1102
MaeIII	GTNAC	3 cut(s)	698, 923, 2075
MboII	GAAGA	6 cut(s)	98, 451, 659, 1452, 1484, 2144
MfeI	CAATTG	3 cut(s)	325, 758, 815
MflI	RGATCY	3 cut(s)	129, 823, 847
MhlI	GDGCHC	3 cut(s)	53, 546, 552
MlyI	GAGTC	2 cut(s)	1002, 1531
MmeI	TCCRAC	3 cut(s)	540, 615, 1937
Mph1103I	ATGCAT	2 cut(s)	1094, 2036
MroXI	GAANNNNTTC	1 cut(s)	1476
MseI	TTAA	9 cut(s)	506, 768, 1034, 1254, 1485, 1652, 1709, 1950, 1995
MspA1I	CMGCKG	3 cut(s)	173, 1549, 1977
MspCI	CTTAAG	1 cut(s)	1651
MspI	CCGG	2 cut(s)	464, 477
MspR9I	CCNGG	1 cut(s)	1315
MunI	CAATTG	3 cut(s)	325, 758, 815
MvaI	CCWGG	1 cut(s)	1315
MwoI	GCNNNNNNNGC	3 cut(s)	10, 19, 1983
NcoI	CCATGG	1 cut(s)	1003
NlaIII	CATG	9 cut(s)	40, 375, 951, 1007, 1068, 1092, 1340, 1874, 1903
NlaIV	GGNNCC	4 cut(s)	168, 616, 825, 1395
NmuCI	GTSAC	1 cut(s)	923
NsiI	ATGCAT	2 cut(s)	1094, 2036
NspI	RCATGY	4 cut(s)	951, 1092, 1874, 1903
PaeI	GCATGC	2 cut(s)	1874, 1903
PaeR7I	CTCGAG	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	1476
PfeI	GAWTC	9 cut(s)	262, 296, 512, 689, 728, 1055, 1213, 1571, 1909
PflMI	CCANNNNNTGG	2 cut(s)	522, 575
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	12, 416, 1020, 1261, 1312, 1979
PleI	GAGTC	2 cut(s)	1001, 1531
PpsI	GAGTC	2 cut(s)	1001, 1531
PpuMI	RGGWCCY	1 cut(s)	1822
PshBI	ATTAAT	1 cut(s)	1995
PsiI	TTATAA	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	1822
Psp6I	CCWGG	1 cut(s)	1313
PspFI	CCCAGC	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	1313
PspN4I	GGNNCC	4 cut(s)	168, 616, 825, 1395
PspPI	GGNCC	3 cut(s)	1327, 1721, 1822
PspPPI	RGGWCCY	1 cut(s)	1822
PspXI	VCTCGAGB	1 cut(s)	545
PstI	CTGCAG	3 cut(s)	419, 1536, 1982
PsuI	RGATCY	3 cut(s)	129, 823, 847
PvuII	CAGCTG	2 cut(s)	1549, 1977
RsaI	GTAC	7 cut(s)	29, 398, 654, 1492, 1637, 1685, 2015
RsaNI	GTAC	7 cut(s)	28, 397, 653, 1491, 1636, 1684, 2014
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	9 cut(s)	506, 768, 1034, 1254, 1485, 1652, 1709, 1950, 1995
SatI	GCNGC	6 cut(s)	11, 415, 1019, 1260, 1311, 1978
Sau96I	GGNCC	3 cut(s)	1327, 1721, 1822
ScaI	AGTACT	1 cut(s)	1492
SchI	GAGTC	2 cut(s)	1002, 1531
ScrFI	CCNGG	1 cut(s)	1315
SduI	GDGCHC	3 cut(s)	53, 546, 552
SfaNI	GCATC	5 cut(s)	175, 769, 854, 880, 2043
SfcI	CTRYAG	3 cut(s)	415, 1532, 1978
Sfr274I	CTCGAG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	1327, 1822
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	5 cut(s)	77, 545, 868, 1582, 1651
SmoI	CTYRAG	5 cut(s)	77, 545, 868, 1582, 1651
SphI	GCATGC	2 cut(s)	1874, 1903
SsiI	CCGC	3 cut(s)	11, 173, 1387
SspMI	CTAG	3 cut(s)	471, 1170, 1511
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	1313
StyI	CCWWGG	3 cut(s)	458, 1003, 1557
TaaI	ACNGT	5 cut(s)	215, 679, 1635, 1741, 2075
TaiI	ACGT	2 cut(s)	930, 1105
TaqI	TCGA	3 cut(s)	546, 1381, 1716
TatI	WGTACW	4 cut(s)	652, 1490, 1635, 1683
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	9 cut(s)	262, 296, 512, 689, 728, 1055, 1213, 1571, 1909
Tru1I	TTAA	9 cut(s)	506, 768, 1034, 1254, 1485, 1652, 1709, 1950, 1995
Tru9I	TTAA	9 cut(s)	506, 768, 1034, 1254, 1485, 1652, 1709, 1950, 1995
TscAI	CASTG	4 cut(s)	928, 994, 1746, 1987
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	5 cut(s)	414, 1018, 1259, 1310, 1977
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	3 cut(s)	162, 1224, 1452
TspGWI	ACGGA	4 cut(s)	61, 74, 179, 1003
TspRI	CASTG	4 cut(s)	928, 994, 1746, 1987
Van91I	CCANNNNNTGG	2 cut(s)	522, 575
Vha464I	CTTAAG	1 cut(s)	1651
VpaK11BI	GGWCC	2 cut(s)	1327, 1822
VspI	ATTAAT	1 cut(s)	1995
XapI	RAATTY	8 cut(s)	581, 796, 874, 962, 1222, 1301, 1475, 1505
XbaI	TCTAGA	1 cut(s)	1510
XceI	RCATGY	4 cut(s)	951, 1092, 1874, 1903
XhoI	CTCGAG	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	1476
XspI	CTAG	3 cut(s)	471, 1170, 1511
ZraI	GACGTC	1 cut(s)	1103
ZrmI	AGTACT	1 cut(s)	1492
Zsp2I	ATGCAT	2 cut(s)	1094, 2036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.