Rh4BG117400

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000252
Physical Location & Seq
Forward (+)
19771801 .. 19773011
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG117400.1

Sequence Viewer

Length: 1017 bp
ATGGAACAATCGTCCAACGATTCGGAGGACATTATTCTCACTAATGATGAAGTGGATGATTCATCAAGGAGCTTAGAGGATGATCAAGAAAATGAGGTGGAAGAAATTATTCTCACTAATGACCAAGGAACAGTGGATGATTCATCAAAGAGCTTAGAGAATGATCAAGAAAATAAGGTGGAAGAAATAATGCAAGTGCCCAGTGTTGAGATGAGTTTTGATTCTATTGATGAGGCATATGACTATTATAGAAAATATGGGAAGCAATTAGGATTCCCAGTGAGAAAGAGAACATCAAGAAAGGGTGATGATGGGATCACAAAATATATAACTATTTCATGTGGTCGAGCAGGAAAATTTAAAAGTAAGTCAAGTAACTCTCTAAAGCCGCATCCAAGTGTGAAGACTGATTGCAAGGCACTTATTAGACTTGGTAAATCCCTTGATGGAAAGTGGAAAATCAATTCTACAAAGCTTGAGCATAACCATGGTTTGAGTCCAAGAAAATCTCGTTATTTCCCAGTCAATCGTGAATTAAGTTCATCAATAAAAAGGAGGCTTGAACTAAATGATGTTGCTAGAATAGGGTTAAACAAGAGTTTTAACTCAATTGTTGTTGAAGCTCAGGGATATGAGAATGTACCATTTTTAGAAAAGGATGCTCGAAATCACATTGAAAAATTTAGGCGATTGCGGCTCAAGGAAGGTGATGCTACTGCAGTTCAGACTTACTTTTTGGATATGCAAGCTAAGAATGCTAGTTTCTTCTATGCCATTGATATAAATGAAAAGGGTCGATTGAGAAATTTGTTTTGGGCAGATGTAAGGAGTAGGGCGGCATACCAAGAATTTGGCGATGTTGTTACATTTGACACTACTTACCTGACGAATAAGTATGAAATGCCCTTTGCTCCATTTGTAGGGGTCAATCATCATGGGCAATCTATATTGCTTGGATGTGGTTTGATTTCAAGTGAAGATACTGAGTCATTTGTTTGGTTGTTCAAGTCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

338

Amino Acids

38.62

Weight (kDa)

5.69

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 81 - 166 1.3e-15 FAR1 DNA-binding domain
MULE PF10551 287 - 336 1.6e-16 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 389, 694, 836
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 4 cut(s) 356, 680, 805, 848
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 1 cut(s) 920
AgsI TTSAA 5 cut(s) 563, 620, 677, 972, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 796, 828
AluBI AGCT 5 cut(s) 72, 153, 475, 623, 749
AluI AGCT 5 cut(s) 72, 153, 475, 623, 749
AlwI GGATC 1 cut(s) 323
ApoI RAATTY 4 cut(s) 356, 680, 805, 848
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
Asp700I GAANNNNTTC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 317, 719
BaeGI GKGCMC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 410
BccI CCATC 2 cut(s) 305, 440
BclI TGATCA 2 cut(s) 82, 163
BfaI CTAG 3 cut(s) 579, 759, 1015
BfmI CTRYAG 1 cut(s) 717
BisI GCNGC 3 cut(s) 389, 695, 837
BlsI GCNGC 3 cut(s) 390, 696, 838
BmrI ACTGGG 3 cut(s) 195, 272, 515
BmsI GCATC 3 cut(s) 400, 649, 700
BmuI ACTGGG 3 cut(s) 195, 272, 515
BpiI GAAGAC 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 2 cut(s) 497, 683
BsaJI CCNNGG 2 cut(s) 124, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 920
Bse1I ACTGG 3 cut(s) 201, 278, 521
BseDI CCNNGG 2 cut(s) 124, 487
BseGI GGATG 6 cut(s) 61, 85, 142, 391, 664, 962
BseLI CCNNNNNNNGG 1 cut(s) 920
BseMII CTCAG 2 cut(s) 638, 975
BseNI ACTGG 3 cut(s) 201, 278, 521
BseSI GKGCMC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 920
BsmI GAATGC 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 82, 163, 315
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 3 cut(s) 389, 694, 836
BspCNI CTCAG 2 cut(s) 637, 976
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 1 cut(s) 323
BsrI ACTGG 3 cut(s) 201, 278, 521
BssECI CCNNGG 2 cut(s) 124, 487
BssMI GATC 3 cut(s) 82, 163, 315
BssT1I CCWWGG 2 cut(s) 124, 487
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 5 cut(s) 73, 154, 624, 750, 984
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 6 cut(s) 61, 85, 142, 391, 664, 962
BstKTI GATC 3 cut(s) 85, 166, 318
BstMBI GATC 3 cut(s) 82, 163, 315
BstMWI GCNNNNNNNGC 2 cut(s) 694, 755
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 6 cut(s) 61, 85, 142, 391, 664, 962
BtsIMutI CAGTG 3 cut(s) 138, 208, 285
Cac8I GCNNGC 1 cut(s) 747
Csp6I GTAC 1 cut(s) 641
CviAII CATG 3 cut(s) 339, 488, 935
CviJI RGCY 8 cut(s) 72, 153, 388, 475, 559, 623, 697, 749
CviKI_1 RGCY 8 cut(s) 72, 153, 388, 475, 559, 623, 697, 749
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 5 cut(s) 73, 154, 624, 750, 984
DpnI GATC 3 cut(s) 84, 165, 317
DpnII GATC 3 cut(s) 82, 163, 315
DraI TTTAAA 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 124, 487
EcoT14I CCWWGG 2 cut(s) 124, 487
ErhI CCWWGG 2 cut(s) 124, 487
FaeI CATG 3 cut(s) 342, 491, 938
FatI CATG 3 cut(s) 338, 487, 934
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 2 cut(s) 82, 163
Fnu4HI GCNGC 3 cut(s) 389, 695, 837
FokI GGATG 6 cut(s) 68, 92, 149, 378, 671, 969
Fsp4HI GCNGC 3 cut(s) 389, 695, 837
FspBI CTAG 3 cut(s) 579, 759, 1015
GluI GCNGC 3 cut(s) 389, 695, 837
Hin1II CATG 3 cut(s) 342, 491, 938
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 7 cut(s) 20, 59, 140, 221, 273, 496, 986
HphI GGTGA 2 cut(s) 317, 719
Hpy188I TCNGA 2 cut(s) 25, 726
Hpy188III TCNNGA 4 cut(s) 86, 167, 297, 530
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 4 cut(s) 193, 414, 719, 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 694, 755
HpyF3I CTNAG 5 cut(s) 73, 154, 624, 750, 984
Hsp92II CATG 3 cut(s) 342, 491, 938
Ksp22I TGATCA 2 cut(s) 82, 163
Kzo9I GATC 3 cut(s) 82, 163, 315
LmnI GCTCC 2 cut(s) 69, 916
LpnPI CCDG 6 cut(s) 214, 291, 336, 534, 611, 896
LweI GCATC 3 cut(s) 400, 649, 700
MaeI CTAG 3 cut(s) 579, 759, 1015
MaeIII GTNAC 2 cut(s) 374, 862
MalI GATC 3 cut(s) 84, 165, 317
MboI GATC 3 cut(s) 82, 163, 315
MboII GAAGA 5 cut(s) 113, 194, 415, 757, 989
MfeI CAATTG 1 cut(s) 609
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 9 cut(s) 105, 266, 356, 463, 533, 609, 680, 805, 848
MlyI GAGTC 2 cut(s) 505, 995
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 19, 70, 88, 226, 549
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 4 cut(s) 360, 536, 590, 603
MslI CAYNNNNRTG 2 cut(s) 396, 486
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 760
MwoI GCNNNNNNNGC 2 cut(s) 694, 755
NcoI CCATGG 1 cut(s) 487
NdeI CATATG 1 cut(s) 238
NdeII GATC 3 cut(s) 82, 163, 315
NlaIII CATG 3 cut(s) 342, 491, 938
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 5 cut(s) 20, 59, 140, 221, 273
PkrI GCNGC 3 cut(s) 390, 696, 838
PleI GAGTC 2 cut(s) 504, 994
PpsI GAGTC 2 cut(s) 504, 994
PstI CTGCAG 1 cut(s) 721
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 2 cut(s) 396, 486
SaqAI TTAA 4 cut(s) 360, 536, 590, 603
SatI GCNGC 3 cut(s) 389, 695, 837
Sau3AI GATC 3 cut(s) 82, 163, 315
SchI GAGTC 2 cut(s) 505, 995
SduI GDGCHC 1 cut(s) 201
SetI ASST 9 cut(s) 74, 99, 155, 180, 477, 625, 709, 751, 885
SfaNI GCATC 3 cut(s) 400, 649, 700
SfcI CTRYAG 1 cut(s) 717
SmiMI CAYNNNNRTG 2 cut(s) 396, 486
SmlI CTYRAG 2 cut(s) 476, 698
SmoI CTYRAG 2 cut(s) 476, 698
Sse9I AATT 9 cut(s) 105, 266, 356, 463, 533, 609, 680, 805, 848
SsiI CCGC 3 cut(s) 389, 694, 836
SspMI CTAG 3 cut(s) 579, 759, 1015
StyI CCWWGG 2 cut(s) 124, 487
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 3 cut(s) 346, 664, 796
TasI AATT 9 cut(s) 105, 266, 356, 463, 533, 609, 680, 805, 848
TauI GCSGC 3 cut(s) 391, 697, 839
TfiI GAWTC 5 cut(s) 20, 59, 140, 221, 273
Tru1I TTAA 4 cut(s) 360, 536, 590, 603
Tru9I TTAA 4 cut(s) 360, 536, 590, 603
TscAI CASTG 3 cut(s) 138, 208, 285
TspDTI ATGAA 7 cut(s) 51, 63, 132, 327, 531, 801, 912
TspRI CASTG 3 cut(s) 138, 208, 285
XapI RAATTY 4 cut(s) 356, 680, 805, 848
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 3 cut(s) 579, 759, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.