Rh6BG173200

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000252
Physical Location & Seq
Forward (+)
28588059 .. 28589868
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG173200.1

Sequence Viewer

Length: 762 bp
ATGGAACGATTGTCCAACGAATCAGAGAACATTATTCTCACTAATGATCAAGGAACAGTGGATGATTCACCAAAGAGCTTAGAGAATAATCAAGAAATTAAGGTGGAAGAAATAATGCAAGTGCCCAGTGTTGAGATGAGTTTTGATTCTATTGATGAGGCATATGACTATTATAGAAAATATGGGAAGCAATTGGGATTCCTAGTGAGAAAGAGAACATCAAGAAAGGGAGATGATGGGAACACAAAATATATAACTATTTCATGCGGTCGAGCCGGAAAATTTAAAAGCAAGTCCAGTAACTCTCTAAAGTCGCATCCAAGTGTGAAGACTGATTGCAAGACACTTATTAGACTTGGTAAATCCCTTGATGGAAAGTGGAAAATCAATTCTACAAAGCTTGAGCATAACCATGGTTTGAGTCCAAGAAAATCTCGTTATTTCTCAGCCAATAGTGAACTAAGTTCATCGACAAAAAGGAGGCTTGAACTAAATGATGTTGCTAGAATAGGGTTAAACAAGAGTTATAACTCAATTGTTGTTGAAGCTCAGGGATATGACAATGTGTCATTTTTGGAAAAAGATGCTCAAAATCACATTGAAAAAATTAGGCGATTGCGGCTGAAGGAAGGTGAGGGCGGCTCAAGGAAGTACATAGTTTATGAAGATATCAAGATTGGGGAGATGAAAAAAACTACTCATTTTCATGTTTCATTCAATGAAGAGAATGATGAAGTTAACTGCAATTGTTGCCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

253

Amino Acids

28.95

Weight (kDa)

8.91

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 56 - 141 1.9e-15 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AciI CCGC 3 cut(s) 267, 619, 639
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 1 cut(s) 653
AgsI TTSAA 4 cut(s) 488, 545, 602, 718
AhdI GACNNNNNGTC 1 cut(s) 565
AluBI AGCT 3 cut(s) 78, 400, 548
AluI AGCT 3 cut(s) 78, 400, 548
ApoI RAATTY 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 60, 644
BaeGI GKGCMC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 335
BccI CCATC 2 cut(s) 230, 365
BclI TGATCA 1 cut(s) 46
BfaI CTAG 2 cut(s) 203, 504
BisI GCNGC 2 cut(s) 620, 640
BlsI GCNGC 2 cut(s) 621, 641
BmeRI GACNNNNNGTC 1 cut(s) 565
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 325, 574
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 335
BplI GAGNNNNNCTC 2 cut(s) 626, 658
Bpu10I CCTNAGC 1 cut(s) 549
BpuEI CTTGAG 2 cut(s) 422, 628
BsaJI CCNNGG 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 126, 297
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 67, 316
BseMII CTCAG 2 cut(s) 459, 563
BseNI ACTGG 2 cut(s) 126, 297
BseSI GKGCMC 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 3 cut(s) 267, 619, 639
BspCNI CTCAG 2 cut(s) 458, 562
BsrI ACTGG 2 cut(s) 126, 297
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 750
BstDEI CTNAG 4 cut(s) 79, 445, 461, 549
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 2 cut(s) 67, 316
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 619, 750
BstSLI GKGCMC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 2 cut(s) 67, 316
BtsIMutI CAGTG 2 cut(s) 63, 133
Csp6I GTAC 1 cut(s) 652
CviAII CATG 3 cut(s) 264, 413, 707
CviJI RGCY 8 cut(s) 78, 275, 400, 449, 484, 548, 622, 642
CviKI_1 RGCY 8 cut(s) 78, 275, 400, 449, 484, 548, 622, 642
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 4 cut(s) 79, 445, 461, 549
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 717
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 412
Eco32I GATATC 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 644
EcoRV GATATC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 3 cut(s) 267, 416, 710
FatI CATG 3 cut(s) 263, 412, 706
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 620, 640
FokI GGATG 2 cut(s) 74, 303
Fsp4HI GCNGC 2 cut(s) 620, 640
FspBI CTAG 2 cut(s) 203, 504
GluI GCNGC 2 cut(s) 620, 640
HapII CCGG 1 cut(s) 276
Hin1II CATG 3 cut(s) 267, 416, 710
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 20, 65, 146, 198, 421
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 60, 644
Hpy166II GTNNAC 2 cut(s) 458, 739
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 92, 222, 673
Hpy8I GTNNAC 2 cut(s) 458, 739
HpyAV CCTTC 2 cut(s) 619, 623
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 118, 339, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 619, 750
HpyF3I CTNAG 4 cut(s) 79, 445, 461, 549
Hsp92II CATG 3 cut(s) 267, 416, 710
Ksp22I TGATCA 1 cut(s) 46
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 139, 289, 310, 536
LweI GCATC 2 cut(s) 325, 574
MaeI CTAG 2 cut(s) 203, 504
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 4 cut(s) 119, 340, 677, 734
MfeI CAATTG 3 cut(s) 191, 534, 745
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 7 cut(s) 96, 191, 281, 388, 534, 606, 745
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 3 cut(s) 151, 474, 628
MseI TTAA 4 cut(s) 99, 285, 515, 738
MslI CAYNNNNRTG 3 cut(s) 321, 411, 705
MspI CCGG 1 cut(s) 276
MunI CAATTG 3 cut(s) 191, 534, 745
MwoI GCNNNNNNNGC 2 cut(s) 619, 750
NcoI CCATGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 46
NlaIII CATG 3 cut(s) 267, 416, 710
PfeI GAWTC 4 cut(s) 20, 65, 146, 198
PkrI GCNGC 2 cut(s) 621, 641
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 528
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 3 cut(s) 321, 411, 705
SaqAI TTAA 4 cut(s) 99, 285, 515, 738
SatI GCNGC 2 cut(s) 620, 640
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 1 cut(s) 126
SetI ASST 5 cut(s) 80, 105, 402, 550, 634
SfaNI GCATC 2 cut(s) 325, 574
SmiMI CAYNNNNRTG 3 cut(s) 321, 411, 705
SmlI CTYRAG 2 cut(s) 401, 643
SmoI CTYRAG 2 cut(s) 401, 643
Sse9I AATT 7 cut(s) 96, 191, 281, 388, 534, 606, 745
SsiI CCGC 3 cut(s) 267, 619, 639
SspMI CTAG 2 cut(s) 203, 504
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 271, 470
TasI AATT 7 cut(s) 96, 191, 281, 388, 534, 606, 745
TatI WGTACW 1 cut(s) 651
TauI GCSGC 2 cut(s) 622, 642
TfiI GAWTC 4 cut(s) 20, 65, 146, 198
Tru1I TTAA 4 cut(s) 99, 285, 515, 738
Tru9I TTAA 4 cut(s) 99, 285, 515, 738
TscAI CASTG 2 cut(s) 63, 133
TspDTI ATGAA 8 cut(s) 252, 456, 678, 695, 701, 702, 735, 747
TspRI CASTG 2 cut(s) 63, 133
XapI RAATTY 1 cut(s) 281
XspI CTAG 2 cut(s) 203, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.