Rh7BG466700

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000252
Physical Location & Seq
Reverse (-)
55200511 .. 55202369
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG466700.1

Sequence Viewer

Length: 999 bp
ATGGAAAGTGTTGAGAATGAAATGGATACTGCATATGTGGAAGAAAATATGGACAGTGGGGATGAAGTGGAAACTGAGAGAAGTAATGTGGAAATTGATATTGAAACTACTGATGAGAATGAAACAGTGAAAGAAAGGGTAAGAGAGCCAGAGATTGGACTAGTGTTTGATTCAATTGATGAGCTAGAGAAGTATTATAAATCCTATGGAAAACGAATGGGGTTTGAAGTTTGTAAAAGGACCTCAAGCAAAGGAGATGATGGGGAATTGAAGTACATAACATTCACATGCTCATGTTTTGGCAAGCCTAACAGCAAGTCAAGACATGCATTTAAATTGCGACCAGTTGCAAAATCAGATTGCAAGGCTAAACTCAATGCGAATTCACTCCTAGATGGAAAATGGTTAGTGTCCTCCATTGTGCTTGAACATAATCATGATCTTAGTACTCCAAGCAAAAGACGGTTTTTTAAAAGCTCAAAAGAATTACCGCCACATGTTAAAAAGAGGTTAGCAACAAATGATATAGCTGGAATAAGACCAAAAAAGAATTTCAATTCCTTTGTGGTTGAAGCAGGTGGACATGAGAATTTACCATTCCTAGAGAAAGATGCGAGAAATTTTCTTGATAAGTCTTTCAATTCAAAGATTCTGTGTTTCACAATGTACAATATTGAGAAACAATATCATGTTGCTTACACAAATACAAAGTTCAAAGAGTTTCAGAAAGAGTTAGAAGGAAAGATGCATTGCGGCATATCATCATCTGAAAGGAATGGTACAATTATAGATATAACTGTGGATGAAGATGTAAAGATTGGTACAGAAATGAGACGAGTCCCGTTCATAGTTCATTTCAATGAGGACAGAGGAATATTATGTCGGCATGCAATTGTGGTTCTAATTCATAAAAATATGGCCGGCGTTCCAGAGAAATACGTTTTAAAACGATGGACAGCAAGTGTAAAACGAAGTCATAGCAAAGTGAAAATAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

332

Amino Acids

38.12

Weight (kDa)

8.31

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 64 - 149 1.1e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AarI CACCTGC 1 cut(s) 566
Acc36I ACCTGC 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 2 cut(s) 491, 753
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 4 cut(s) 382, 550, 589, 619
AfaI GTAC 5 cut(s) 275, 448, 668, 781, 823
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 496
AhlI ACTAGT 1 cut(s) 160
AluBI AGCT 4 cut(s) 184, 477, 530, 996
AluI AGCT 4 cut(s) 184, 477, 530, 996
Alw26I GTCTC 1 cut(s) 826
AoxI GGCC 1 cut(s) 918
ApoI RAATTY 4 cut(s) 382, 550, 589, 619
AspS9I GGNCC 1 cut(s) 240
AvaII GGWCC 1 cut(s) 240
BccI CCATC 3 cut(s) 254, 389, 945
BciVI GTATCC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 826
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 4 cut(s) 161, 185, 392, 602
BfuAI ACCTGC 1 cut(s) 566
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 1 cut(s) 754
BlsI GCNGC 1 cut(s) 755
BmcAI AGTACT 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmsI GCATC 2 cut(s) 601, 735
BpuEI CTTGAG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 920
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 748
BseGI GGATG 2 cut(s) 67, 808
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 344
BshFI GGCC 1 cut(s) 920
BsiSI CCGG 1 cut(s) 921
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 826
BsmBI CGTCTC 1 cut(s) 826
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 1 cut(s) 920
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 2 cut(s) 491, 753
BspANI GGCC 1 cut(s) 920
BspCNI CTCAG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 920
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 920
BssMI GATC 1 cut(s) 439
Bst4CI ACNGT 4 cut(s) 56, 127, 465, 799
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 3 cut(s) 305, 888, 922
BstDEI CTNAG 2 cut(s) 75, 443
BstF5I GGATG 2 cut(s) 67, 808
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 1 cut(s) 439
BstNSI RCATGY 4 cut(s) 291, 329, 500, 890
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 920
BtsCI GGATG 2 cut(s) 67, 808
BtsIMutI CAGTG 2 cut(s) 61, 132
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 3 cut(s) 305, 888, 922
CciI TCATGA 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 920
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 5 cut(s) 274, 447, 667, 780, 822
CviAII CATG 8 cut(s) 288, 294, 326, 437, 497, 584, 689, 887
CviJI RGCY 8 cut(s) 148, 184, 307, 368, 477, 530, 920, 996
CviKI_1 RGCY 8 cut(s) 148, 184, 307, 368, 477, 530, 920, 996
CviQI GTAC 5 cut(s) 274, 447, 667, 780, 822
DdeI CTNAG 2 cut(s) 75, 443
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
DraI TTTAAA 3 cut(s) 334, 472, 945
EaeI YGGCCR 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 382
EcoT22I ATGCAT 2 cut(s) 331, 750
Esp3I CGTCTC 1 cut(s) 826
FaeI CATG 8 cut(s) 291, 297, 329, 440, 500, 587, 692, 890
FaqI GGGAC 1 cut(s) 824
FatI CATG 8 cut(s) 287, 293, 325, 436, 496, 583, 688, 886
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 754
FokI GGATG 2 cut(s) 74, 815
Fsp4HI GCNGC 1 cut(s) 754
FspBI CTAG 4 cut(s) 161, 185, 392, 602
GluI GCNGC 1 cut(s) 754
HaeIII GGCC 1 cut(s) 920
HapII CCGG 1 cut(s) 921
Hin1II CATG 8 cut(s) 291, 297, 329, 440, 500, 587, 692, 890
HinfI GANTC 3 cut(s) 170, 649, 837
HpaII CCGG 1 cut(s) 921
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 3 cut(s) 358, 726, 769
Hpy188III TCNNGA 4 cut(s) 321, 437, 626, 929
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 1 cut(s) 731
HpyCH4III ACNGT 4 cut(s) 56, 127, 465, 799
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 6 cut(s) 32, 329, 350, 363, 748, 890
HpyF3I CTNAG 2 cut(s) 75, 443
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 8 cut(s) 291, 297, 329, 440, 500, 587, 692, 890
KroI GCCGGC 1 cut(s) 920
KroNI GCCGGC 1 cut(s) 922
Kzo9I GATC 1 cut(s) 439
LpnPI CCDG 6 cut(s) 162, 357, 516, 561, 934, 942
LweI GCATC 2 cut(s) 601, 735
MaeI CTAG 4 cut(s) 161, 185, 392, 602
MaeII ACGT 1 cut(s) 939
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 2 cut(s) 53, 818
MfeI CAATTG 2 cut(s) 174, 891
MlyI GAGTC 1 cut(s) 846
MnlI CCTC 5 cut(s) 253, 424, 501, 856, 863
Mph1103I ATGCAT 2 cut(s) 331, 750
MroNI GCCGGC 1 cut(s) 920
MseI TTAA 4 cut(s) 333, 471, 501, 944
MslI CAYNNNNRTG 4 cut(s) 286, 292, 435, 858
MspI CCGG 1 cut(s) 921
MunI CAATTG 2 cut(s) 174, 891
NaeI GCCGGC 1 cut(s) 922
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 439
NgoMIV GCCGGC 1 cut(s) 920
NlaIII CATG 8 cut(s) 291, 297, 329, 440, 500, 587, 692, 890
NsiI ATGCAT 2 cut(s) 331, 750
NspI RCATGY 4 cut(s) 291, 329, 500, 890
PaeI GCATGC 1 cut(s) 890
PagI TCATGA 1 cut(s) 436
PaqCI CACCTGC 1 cut(s) 566
PciI ACATGT 1 cut(s) 496
PdiI GCCGGC 1 cut(s) 922
PfeI GAWTC 2 cut(s) 170, 649
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 1 cut(s) 755
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
PpuMI RGGWCCY 1 cut(s) 240
PscI ACATGT 1 cut(s) 496
PsiI TTATAA 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 240
PspPI GGNCC 1 cut(s) 240
PspPPI RGGWCCY 1 cut(s) 240
RsaI GTAC 5 cut(s) 275, 448, 668, 781, 823
RsaNI GTAC 5 cut(s) 274, 447, 667, 780, 822
RseI CAYNNNNRTG 4 cut(s) 286, 292, 435, 858
SaqAI TTAA 4 cut(s) 333, 471, 501, 944
SatI GCNGC 1 cut(s) 754
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 240
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 1 cut(s) 846
SetI ASST 8 cut(s) 186, 245, 479, 512, 532, 580, 942, 998
SfaNI GCATC 2 cut(s) 601, 735
SinI GGWCC 1 cut(s) 240
SmiI ATTTAAAT 1 cut(s) 334
SmiMI CAYNNNNRTG 4 cut(s) 286, 292, 435, 858
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SpeI ACTAGT 1 cut(s) 160
SphI GCATGC 1 cut(s) 890
SsiI CCGC 2 cut(s) 491, 753
SspI AATATT 2 cut(s) 673, 876
SspMI CTAG 4 cut(s) 161, 185, 392, 602
SwaI ATTTAAAT 1 cut(s) 334
TaaI ACNGT 4 cut(s) 56, 127, 465, 799
TaiI ACGT 1 cut(s) 942
TatI WGTACW 3 cut(s) 273, 446, 666
TauI GCSGC 1 cut(s) 756
TfiI GAWTC 2 cut(s) 170, 649
Tru1I TTAA 4 cut(s) 333, 471, 501, 944
Tru9I TTAA 4 cut(s) 333, 471, 501, 944
TscAI CASTG 2 cut(s) 61, 132
TspDTI ATGAA 7 cut(s) 33, 78, 135, 819, 835, 842, 896
TspRI CASTG 2 cut(s) 61, 132
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 4 cut(s) 382, 550, 589, 619
XceI RCATGY 4 cut(s) 291, 329, 500, 890
XspI CTAG 4 cut(s) 161, 185, 392, 602
ZrmI AGTACT 1 cut(s) 448
Zsp2I ATGCAT 2 cut(s) 331, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.